Wall clock time and date at job start Tue Mar 31 2020 04:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27943 * 1 3 3 Si 1.86798 * 119.99942 * 2 1 4 4 H 1.48498 * 109.47418 * 269.99948 * 3 2 1 5 5 H 1.48504 * 109.47109 * 30.00267 * 3 2 1 6 6 H 1.48505 * 109.47129 * 149.99974 * 3 2 1 7 7 C 1.50701 * 119.99925 * 180.02562 * 2 1 3 8 8 C 1.55454 * 110.93794 * 272.28188 * 7 2 1 9 9 C 1.54931 * 101.87550 * 155.69019 * 8 7 2 10 10 H 1.08998 * 110.18859 * 86.44547 * 9 8 7 11 11 C 1.50698 * 110.18966 * 208.29127 * 9 8 7 12 12 O 1.21249 * 120.00042 * 102.80895 * 11 9 8 13 13 C 1.47170 * 119.99835 * 282.81568 * 11 9 8 14 14 C 1.39850 * 120.16826 * 359.71839 * 13 11 9 15 15 C 1.37891 * 119.82232 * 179.77170 * 14 13 11 16 16 C 1.38408 * 120.16746 * 0.53298 * 15 14 13 17 17 C 1.38402 * 120.35444 * 359.69535 * 16 15 14 18 18 C 1.37889 * 120.16926 * 0.04652 * 17 16 15 19 19 N 1.46437 * 105.78546 * 327.36806 * 9 8 7 20 20 C 1.38640 * 128.21279 * 191.27247 * 19 9 8 21 21 C 1.34877 * 116.14557 * 218.41034 * 20 19 9 22 22 C 1.47722 * 119.33155 * 1.00985 * 21 20 19 23 23 C 1.39601 * 120.21798 * 162.41216 * 22 21 20 24 24 C 1.37946 * 119.82233 * 179.68993 * 23 22 21 25 25 C 1.38395 * 120.32125 * 359.90675 * 24 23 22 26 26 C 1.38475 * 120.25839 * 0.39367 * 25 24 23 27 27 C 1.37542 * 119.98294 * 359.47142 * 26 25 24 28 28 C 1.47815 * 109.32523 * 14.62011 * 19 9 8 29 29 H 1.09000 * 110.56219 * 249.81531 * 28 19 9 30 30 H 0.96997 * 119.99805 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.80346 * 148.63359 * 7 2 1 32 32 H 1.08999 * 110.95304 * 273.83536 * 8 7 2 33 33 H 1.09001 * 110.94853 * 37.50950 * 8 7 2 34 34 H 1.08004 * 120.08886 * 0.02562 * 14 13 11 35 35 H 1.07995 * 119.91858 * 180.24864 * 15 14 13 36 36 H 1.08005 * 119.82165 * 179.71656 * 16 15 14 37 37 H 1.07995 * 119.91825 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.09127 * 179.97438 * 18 17 16 39 39 H 1.07996 * 121.93428 * 38.39388 * 20 19 9 40 40 H 1.08003 * 120.33642 * 181.02422 * 21 20 19 41 41 H 1.08001 * 120.09347 * 359.66917 * 23 22 21 42 42 H 1.07993 * 119.84234 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.86631 * 180.11265 * 25 24 23 44 44 H 1.08001 * 120.01432 * 179.72371 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 2.4609 2.0465 -1.4000 5 1 1.4108 2.6527 0.7001 6 1 3.5110 1.4402 0.7001 7 6 2.0329 -1.3051 -0.0006 8 6 2.2606 -1.8158 1.4499 9 6 2.4295 -3.3399 1.2286 10 1 3.4691 -3.5738 0.9994 11 6 1.9831 -4.0959 2.4533 12 8 0.9055 -4.6516 2.4635 13 6 2.8551 -4.1597 3.6371 14 6 4.1012 -3.5249 3.6271 15 6 4.9105 -3.5852 4.7419 16 6 4.4971 -4.2810 5.8647 17 6 3.2674 -4.9159 5.8807 18 6 2.4444 -4.8603 4.7757 19 7 1.5733 -3.6741 0.0885 20 6 1.2072 -4.9303 -0.3698 21 6 1.1445 -5.0793 -1.7089 22 6 1.4822 -3.9358 -2.5809 23 6 1.7825 -4.1442 -3.9282 24 6 2.0904 -3.0697 -4.7366 25 6 2.1012 -1.7863 -4.2189 26 6 1.8107 -1.5706 -2.8822 27 6 1.4993 -2.6332 -2.0664 28 6 1.1796 -2.4314 -0.6084 29 1 0.1188 -2.2292 -0.4606 30 1 -0.4850 0.8400 0.0004 31 1 2.9799 -1.2051 -0.5309 32 1 3.1639 -1.3819 1.8786 33 1 1.3943 -1.6062 2.0774 34 1 4.4270 -2.9854 2.7501 35 1 5.8714 -3.0922 4.7373 36 1 5.1375 -4.3285 6.7332 37 1 2.9517 -5.4564 6.7607 38 1 1.4853 -5.3565 4.7894 39 1 0.9852 -5.7427 0.3062 40 1 0.8503 -6.0252 -2.1393 41 1 1.7741 -5.1440 -4.3365 42 1 2.3232 -3.2306 -5.7788 43 1 2.3415 -0.9502 -4.8589 44 1 1.8246 -0.5679 -2.4813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004566201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:15 Heat of formation + Delta-G solvation = 81.080513 kcal Electronic energy + Delta-G solvation = -28232.281480 eV Core-core repulsion = 24581.160142 eV Total energy + Delta-G solvation = -3651.121338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02863 -40.70842 -39.32170 -38.59221 -36.96259 -34.97022 -33.20129 -32.26613 -32.00769 -31.69347 -29.44650 -29.30373 -25.61967 -24.97053 -23.79729 -23.59815 -23.10015 -22.65207 -20.98148 -20.31713 -19.39424 -18.67740 -18.25951 -17.63865 -17.08089 -16.77262 -16.51146 -16.08750 -15.86179 -15.74878 -15.46953 -15.17512 -15.06242 -14.85912 -14.65698 -14.52876 -14.42773 -14.12262 -13.90992 -13.63262 -13.48336 -13.16246 -13.13670 -12.96898 -12.74731 -12.66630 -12.39329 -12.29661 -12.17767 -11.92863 -11.70467 -11.48040 -11.12672 -10.70587 -10.08101 -10.04835 -10.02348 -9.65108 -9.51926 -7.96464 -0.41329 0.27530 0.29731 0.60111 0.66210 0.90250 1.25806 1.31998 1.55909 1.70179 1.77099 2.13112 2.72570 2.86015 3.12829 3.18551 3.44387 3.58484 3.70909 3.78302 3.86515 3.92913 3.99230 4.06050 4.09524 4.16913 4.24555 4.28664 4.30982 4.34018 4.42358 4.56444 4.65292 4.70560 4.72511 4.76382 4.80854 4.85954 4.91642 5.13500 5.19453 5.21419 5.24878 5.32059 5.33396 5.38766 5.48230 5.73978 5.76870 5.79728 5.82769 6.21886 6.33345 6.42987 6.73736 6.84947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.002 4.002 3 Si 0.926 3.074 4 H -0.233 1.233 5 H -0.243 1.243 6 H -0.229 1.229 7 C -0.066 4.066 8 C -0.107 4.107 9 C 0.111 3.889 10 H 0.098 0.902 11 C 0.388 3.612 12 O -0.433 6.433 13 C -0.169 4.169 14 C -0.075 4.075 15 C -0.131 4.131 16 C -0.086 4.086 17 C -0.131 4.131 18 C -0.060 4.060 19 N -0.628 5.628 20 C 0.166 3.834 21 C -0.236 4.236 22 C -0.012 4.012 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.133 4.133 26 C -0.105 4.105 27 C -0.106 4.106 28 C 0.199 3.801 29 H 0.105 0.895 30 H 0.342 0.658 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 2.978 2.385 6.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.230 5.230 2 C -0.251 4.251 3 Si 0.741 3.259 4 H -0.156 1.156 5 H -0.166 1.166 6 H -0.150 1.150 7 C -0.086 4.086 8 C -0.146 4.146 9 C 0.005 3.995 10 H 0.116 0.884 11 C 0.263 3.737 12 O -0.306 6.306 13 C -0.171 4.171 14 C -0.093 4.093 15 C -0.149 4.149 16 C -0.104 4.104 17 C -0.149 4.149 18 C -0.078 4.078 19 N -0.341 5.341 20 C 0.049 3.951 21 C -0.261 4.261 22 C -0.012 4.012 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.152 4.152 26 C -0.124 4.124 27 C -0.108 4.108 28 C 0.096 3.904 29 H 0.123 0.877 30 H 0.159 0.841 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.199 2.712 2.488 5.584 hybrid contribution 0.067 0.477 -0.057 0.485 sum 4.266 3.188 2.431 5.855 Atomic orbital electron populations 1.68090 1.09998 1.37262 1.07648 1.29968 0.96788 1.04977 0.93408 0.85807 0.81606 0.75116 0.83381 1.15634 1.16577 1.15039 1.21541 0.98990 0.91440 0.96628 1.22803 1.04390 0.91207 0.96188 1.21891 0.95938 0.95502 0.86151 0.88441 1.22835 0.85592 0.77717 0.87590 1.90540 1.21177 1.36270 1.82582 1.20444 0.96801 1.03615 0.96229 1.21492 0.92603 0.96612 0.98596 1.21201 1.00314 1.00087 0.93321 1.21515 0.95877 0.94829 0.98215 1.21228 0.94609 1.00394 0.98682 1.21458 0.99551 0.95125 0.91700 1.46619 1.55380 1.03869 1.28234 1.21664 0.93639 0.86187 0.93622 1.21859 1.13874 0.98288 0.92126 1.18755 0.97152 0.92232 0.93071 1.21190 1.00916 0.98982 0.92831 1.21072 0.99735 0.92743 0.99676 1.21122 1.01665 0.97061 0.95311 1.20682 1.00047 0.97896 0.93776 1.20257 1.02614 0.93063 0.94838 1.20577 1.00049 0.82482 0.87331 0.87726 0.84072 0.87287 0.88239 0.89225 0.85000 0.85104 0.85340 0.85185 0.84885 0.83816 0.85346 0.86041 0.86218 0.86237 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 -0.14 12.30 56.23 0.69 0.55 16 2 C 0.00 0.00 3.90 -13.90 -0.05 -0.05 16 3 Si 0.93 -2.29 29.56 -169.99 -5.02 -7.31 16 4 H -0.23 0.41 7.11 56.52 0.40 0.81 16 5 H -0.24 0.37 7.11 56.52 0.40 0.77 16 6 H -0.23 0.64 7.11 56.52 0.40 1.05 16 7 C -0.07 0.06 1.76 -90.04 -0.16 -0.10 16 8 C -0.11 0.18 5.62 -24.41 -0.14 0.05 16 9 C 0.11 -0.01 2.73 -68.10 -0.19 -0.19 16 10 H 0.10 -0.17 7.33 -51.93 -0.38 -0.55 16 11 C 0.39 0.59 6.19 -30.68 -0.19 0.40 16 12 O -0.43 -2.02 15.12 5.58 0.08 -1.94 16 13 C -0.17 -0.06 5.87 -105.06 -0.62 -0.68 16 14 C -0.07 0.13 9.27 -39.11 -0.36 -0.24 16 15 C -0.13 0.25 10.03 -39.65 -0.40 -0.15 16 16 C -0.09 0.13 10.04 -39.46 -0.40 -0.27 16 17 C -0.13 0.08 10.03 -39.65 -0.40 -0.31 16 18 C -0.06 -0.04 9.60 -39.11 -0.38 -0.42 16 19 N -0.63 -1.40 2.82 -158.88 -0.45 -1.85 16 20 C 0.17 0.49 10.10 -15.66 -0.16 0.33 16 21 C -0.24 -0.74 9.99 -36.90 -0.37 -1.10 16 22 C -0.01 -0.04 5.81 -104.83 -0.61 -0.65 16 23 C -0.12 -0.35 9.79 -39.18 -0.38 -0.73 16 24 C -0.11 -0.24 10.02 -39.63 -0.40 -0.64 16 25 C -0.13 -0.25 10.05 -39.44 -0.40 -0.64 16 26 C -0.11 -0.21 8.97 -39.75 -0.36 -0.56 16 27 C -0.11 -0.32 5.49 -104.24 -0.57 -0.89 16 28 C 0.20 0.41 3.16 -67.97 -0.21 0.20 16 29 H 0.11 0.43 6.84 -51.93 -0.36 0.08 16 30 H 0.34 -0.47 8.23 -40.82 -0.34 -0.81 16 31 H 0.11 -0.26 7.30 -51.93 -0.38 -0.64 16 32 H 0.10 -0.47 7.55 -51.93 -0.39 -0.86 16 33 H 0.09 -0.05 7.92 -51.93 -0.41 -0.46 16 34 H 0.13 -0.55 6.01 -52.48 -0.32 -0.87 16 35 H 0.13 -0.51 8.06 -52.49 -0.42 -0.94 16 36 H 0.13 -0.43 8.06 -52.48 -0.42 -0.85 16 37 H 0.13 -0.29 8.06 -52.49 -0.42 -0.72 16 38 H 0.13 0.13 7.65 -52.49 -0.40 -0.27 16 39 H 0.14 0.35 7.25 -52.49 -0.38 -0.03 16 40 H 0.13 0.23 8.06 -52.48 -0.42 -0.20 16 41 H 0.12 0.17 8.06 -52.49 -0.42 -0.25 16 42 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 43 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 44 H 0.12 0.02 6.57 -52.49 -0.34 -0.33 16 LS Contribution 358.59 15.07 5.40 5.40 Total: 0.00 -6.20 358.59 -11.47 -17.68 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -5.45 Total: -5.87 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -6.73 Total: -6.66 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: 0.24 Total: -1.30 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: 0.08 Total: -1.94 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: -5.02 Total: -7.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -6.20 -11.47 -17.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004566201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.757 kcal (2) G-P(sol) polarization free energy of solvation -6.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds