Wall clock time and date at job start Tue Mar 31 2020 05:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36555 * 127.17270 * 2 1 4 4 S 1.76201 * 126.38502 * 359.97438 * 3 2 1 5 5 C 1.81002 * 100.00185 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47111 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00157 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00233 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99860 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00286 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47091 * 90.00317 * 10 8 6 12 12 H 1.48508 * 109.46981 * 209.99969 * 10 8 6 13 13 H 1.48494 * 109.46824 * 329.99827 * 10 8 6 14 14 N 1.31453 * 107.23429 * 180.02562 * 3 2 1 15 15 N 1.28502 * 110.07627 * 0.02562 * 14 3 2 16 16 C 1.31262 * 109.96282 * 359.97438 * 15 14 3 17 17 C 1.47846 * 126.46181 * 179.97438 * 16 15 14 18 18 C 1.39572 * 120.14564 * 20.34832 * 17 16 15 19 19 C 1.37962 * 119.85037 * 179.74752 * 18 17 16 20 20 C 1.38352 * 120.14597 * 0.52232 * 19 18 17 21 21 C 1.50700 * 119.85521 * 179.76634 * 20 19 18 22 22 C 1.52999 * 109.47446 * 239.98165 * 21 20 19 23 23 C 1.52999 * 109.46923 * 359.97438 * 21 20 19 24 24 C 1.53002 * 109.46786 * 119.97896 * 21 20 19 25 25 C 1.38365 * 120.29309 * 359.74819 * 20 19 18 26 26 C 1.37954 * 120.14427 * 359.97438 * 25 20 19 27 27 H 1.08990 * 109.47315 * 96.36994 * 1 2 3 28 28 H 1.08997 * 109.47038 * 216.37105 * 1 2 3 29 29 H 1.09005 * 109.47136 * 336.36564 * 1 2 3 30 30 H 1.08999 * 109.47288 * 300.00076 * 5 4 3 31 31 H 1.09001 * 109.47141 * 60.00014 * 5 4 3 32 32 H 0.96996 * 120.00171 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.07186 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.92327 * 180.25196 * 19 18 17 35 35 H 1.08998 * 109.46858 * 59.99696 * 22 21 20 36 36 H 1.08999 * 109.47130 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.46805 * 299.99753 * 22 21 20 38 38 H 1.09003 * 109.47585 * 59.99699 * 23 21 20 39 39 H 1.08999 * 109.47148 * 179.97438 * 23 21 20 40 40 H 1.09003 * 109.47287 * 299.99402 * 23 21 20 41 41 H 1.08998 * 109.46993 * 60.00546 * 24 21 20 42 42 H 1.09002 * 109.47036 * 179.97438 * 24 21 20 43 43 H 1.08996 * 109.47526 * 300.00163 * 24 21 20 44 44 H 1.07992 * 119.92737 * 179.97438 * 25 20 19 45 45 H 1.08001 * 120.07488 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2901 1.0881 0.0000 4 16 1.7914 2.7780 -0.0006 5 6 3.4120 3.5841 -0.0011 6 6 3.2291 5.0800 -0.0023 7 1 2.2351 5.5025 -0.0023 8 6 4.3305 5.9092 -0.0023 9 7 5.5410 5.3948 -0.0017 10 14 4.1038 7.7634 -0.0031 11 1 4.0433 8.2553 1.3968 12 1 5.2475 8.4017 -0.7030 13 1 2.8404 8.1072 -0.7036 14 7 3.5259 0.6398 -0.0006 15 7 3.5290 -0.6452 -0.0014 16 6 2.2963 -1.0963 -0.0010 17 6 1.8798 -2.5149 -0.0022 18 6 2.7685 -3.5067 0.4157 19 6 2.3718 -4.8280 0.4170 20 6 1.0998 -5.1720 -0.0049 21 6 0.6751 -6.6179 -0.0057 22 6 0.3042 -7.0397 -1.4289 23 6 1.8273 -7.4881 0.5001 24 6 -0.5374 -6.7937 0.9107 25 6 0.2158 -4.1942 -0.4257 26 6 0.5980 -2.8687 -0.4265 27 1 -0.3633 -0.1140 -1.0212 28 1 -0.3633 -0.8274 0.6094 29 1 -0.3634 0.9415 0.4120 30 1 3.9663 3.2862 0.8890 31 1 3.9661 3.2855 -0.8910 32 1 6.3159 5.9781 -0.0021 33 1 3.7630 -3.2398 0.7415 34 1 3.0571 -5.5960 0.7440 35 1 1.1681 -6.9144 -2.0817 36 1 -0.0025 -8.0857 -1.4295 37 1 -0.5166 -6.4197 -1.7893 38 1 2.0917 -7.1877 1.5140 39 1 1.5200 -8.5339 0.5000 40 1 2.6911 -7.3629 -0.1529 41 1 -1.3583 -6.1737 0.5502 42 1 -0.8450 -7.8394 0.9098 43 1 -0.2733 -6.4932 1.9246 44 1 -0.7754 -4.4694 -0.7542 45 1 -0.0930 -2.1064 -0.7549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005857387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:32 Heat of formation + Delta-G solvation = 82.023129 kcal Electronic energy + Delta-G solvation = -24737.488833 eV Core-core repulsion = 21267.800812 eV Total energy + Delta-G solvation = -3469.688022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.44216 -40.04405 -36.77346 -34.82223 -33.20010 -31.76080 -31.36407 -29.00171 -28.38387 -27.80142 -27.61735 -27.53209 -23.97071 -23.19116 -22.85553 -21.67580 -20.92472 -19.55914 -17.82407 -16.90939 -16.24648 -16.17484 -15.88724 -15.54259 -15.05604 -14.75831 -14.63287 -14.51577 -14.06717 -13.68355 -13.44447 -13.20118 -13.16766 -13.03947 -12.54349 -12.45639 -12.40664 -12.30472 -12.21131 -12.05238 -11.68503 -11.34592 -11.32191 -10.96699 -10.93735 -10.86661 -10.81044 -10.55449 -10.12243 -10.03716 -9.92828 -9.68868 -9.26593 -9.15357 -8.70596 -8.45843 -6.87745 -6.20919 -4.29737 0.73919 1.20301 1.76527 2.13429 2.81101 3.12196 3.24492 3.30061 3.31661 3.44225 3.67675 4.15745 4.30508 4.31680 4.37494 4.57981 4.62612 4.73976 4.79506 4.91383 4.98776 5.12049 5.15199 5.17061 5.24419 5.29083 5.31432 5.39042 5.49518 5.50509 5.52199 5.57575 5.66007 5.70903 5.81956 5.88072 5.92854 5.94541 6.12746 6.29088 6.37835 6.41107 6.71005 6.92750 7.10036 7.21196 7.66000 7.91072 8.70860 8.98644 9.33865 10.89339 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.037924 B = 0.002083 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.143023 B =13441.653670 C =13951.320433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.469 5.469 3 C 0.184 3.816 4 S -0.053 6.053 5 C 0.079 3.921 6 C -0.528 4.528 7 H 0.067 0.933 8 C 0.071 3.929 9 N -0.880 5.880 10 Si 0.909 3.091 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.271 1.271 14 N -0.287 5.287 15 N -0.268 5.268 16 C 0.192 3.808 17 C -0.003 4.003 18 C -0.076 4.076 19 C -0.118 4.118 20 C -0.066 4.066 21 C -0.031 4.031 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.112 4.112 26 C -0.114 4.114 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.268 0.732 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.125 0.875 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.390 -25.110 0.170 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.164 5.164 3 C -0.189 4.189 4 S 0.176 5.824 5 C -0.068 4.068 6 C -0.568 4.568 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.517 5.517 10 Si 0.735 3.265 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.195 1.195 14 N -0.132 5.132 15 N -0.109 5.109 16 C -0.074 4.074 17 C -0.006 4.006 18 C -0.096 4.096 19 C -0.136 4.136 20 C -0.066 4.066 21 C -0.031 4.031 22 C -0.196 4.196 23 C -0.203 4.203 24 C -0.196 4.196 25 C -0.130 4.130 26 C -0.134 4.134 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.143 0.857 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.764 -24.515 0.165 28.115 hybrid contribution -0.196 0.525 -0.042 0.561 sum -13.960 -23.990 0.123 27.757 Atomic orbital electron populations 1.22232 0.75739 1.05425 1.03731 1.46322 1.08221 1.04994 1.56883 1.27506 0.89523 0.96793 1.05041 1.85413 1.21346 0.84589 1.91045 1.21357 0.85802 0.96991 1.02647 1.20574 0.93580 0.88243 1.54385 0.91457 1.24948 0.94689 0.99484 0.94371 1.69985 0.97813 1.35829 1.48035 0.86329 0.78023 0.83758 0.78386 1.20264 1.20846 1.19545 1.74873 1.15697 1.02017 1.20573 1.74258 1.16441 1.03721 1.16501 1.22813 0.87148 0.88844 1.08558 1.17468 0.94513 0.86833 1.01804 1.21234 0.99537 0.91676 0.97169 1.21130 0.96069 0.95867 1.00494 1.19926 0.93930 0.94735 0.98056 1.19526 0.96123 0.91095 0.96329 1.21896 1.01706 1.01103 0.94900 1.21982 0.97768 0.99178 1.01360 1.21894 0.96687 1.01683 0.99308 1.20792 0.99646 0.91860 1.00746 1.21348 0.95231 0.96861 0.99945 0.89948 0.89088 0.88411 0.92819 0.92797 0.92236 0.84659 0.85007 0.92343 0.92319 0.92392 0.92108 0.92345 0.92064 0.92400 0.92322 0.92384 0.85748 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.31 59.85 0.56 1.35 16 2 N -0.47 -7.89 3.24 -121.46 -0.39 -8.28 16 3 C 0.18 3.85 8.07 -88.18 -0.71 3.14 16 4 S -0.05 -1.13 21.59 -107.50 -2.32 -3.45 16 5 C 0.08 2.10 4.99 36.01 0.18 2.28 16 6 C -0.53 -14.55 9.13 -34.44 -0.31 -14.86 16 7 H 0.07 1.79 7.71 -52.49 -0.40 1.38 16 8 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 9 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 10 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 N -0.29 -6.77 11.59 30.71 0.36 -6.41 16 15 N -0.27 -5.69 12.03 32.59 0.39 -5.30 16 16 C 0.19 3.35 7.68 -153.76 -1.18 2.17 16 17 C 0.00 -0.05 5.86 -104.97 -0.62 -0.66 16 18 C -0.08 -0.93 9.71 -39.19 -0.38 -1.31 16 19 C -0.12 -1.14 8.96 -39.64 -0.36 -1.49 16 20 C -0.07 -0.57 4.77 -104.53 -0.50 -1.06 16 21 C -0.03 -0.20 0.85 -155.66 -0.13 -0.33 16 22 C -0.14 -0.83 8.29 37.16 0.31 -0.52 16 23 C -0.15 -0.85 7.13 37.16 0.26 -0.58 16 24 C -0.14 -0.80 8.29 37.16 0.31 -0.49 16 25 C -0.11 -0.98 8.69 -39.64 -0.34 -1.33 16 26 C -0.11 -1.20 8.71 -39.18 -0.34 -1.54 16 27 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 28 H 0.09 0.79 6.71 -51.93 -0.35 0.44 16 29 H 0.10 1.04 7.67 -51.93 -0.40 0.65 16 30 H 0.05 1.53 8.14 -51.92 -0.42 1.11 16 31 H 0.05 1.54 8.14 -51.92 -0.42 1.11 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.14 1.73 7.99 -52.49 -0.42 1.31 16 34 H 0.13 1.02 5.87 -52.49 -0.31 0.71 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.33 7.37 -51.93 -0.38 -0.05 16 38 H 0.06 0.35 7.50 -51.93 -0.39 -0.04 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 41 H 0.06 0.32 7.38 -51.93 -0.38 -0.07 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.12 0.82 7.08 -52.49 -0.37 0.44 16 45 H 0.13 1.12 5.11 -52.49 -0.27 0.85 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -32.76 379.38 -10.45 -43.21 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.56 Total: -2.97 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.35 Total: -13.38 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 1.09 Total: -45.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.32 Total: -3.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.76 -10.45 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005857387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.234 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds