Wall clock time and date at job start Tue Mar 31 2020 05:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36555 * 127.17270 * 2 1 4 4 S 1.76201 * 126.38502 * 359.97438 * 3 2 1 5 5 C 1.81002 * 100.00185 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47111 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00157 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00233 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99860 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00286 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47091 * 90.00317 * 10 8 6 12 12 H 1.48508 * 109.46981 * 209.99969 * 10 8 6 13 13 H 1.48494 * 109.46824 * 329.99827 * 10 8 6 14 14 N 1.31453 * 107.23429 * 180.02562 * 3 2 1 15 15 N 1.28502 * 110.07627 * 0.02562 * 14 3 2 16 16 C 1.31262 * 109.96282 * 359.97438 * 15 14 3 17 17 C 1.47846 * 126.46181 * 179.97438 * 16 15 14 18 18 C 1.39572 * 120.14564 * 20.34832 * 17 16 15 19 19 C 1.37962 * 119.85037 * 179.74752 * 18 17 16 20 20 C 1.38352 * 120.14597 * 0.52232 * 19 18 17 21 21 C 1.50700 * 119.85521 * 179.76634 * 20 19 18 22 22 C 1.52999 * 109.47446 * 239.98165 * 21 20 19 23 23 C 1.52999 * 109.46923 * 359.97438 * 21 20 19 24 24 C 1.53002 * 109.46786 * 119.97896 * 21 20 19 25 25 C 1.38365 * 120.29309 * 359.74819 * 20 19 18 26 26 C 1.37954 * 120.14427 * 359.97438 * 25 20 19 27 27 H 1.08990 * 109.47315 * 96.36994 * 1 2 3 28 28 H 1.08997 * 109.47038 * 216.37105 * 1 2 3 29 29 H 1.09005 * 109.47136 * 336.36564 * 1 2 3 30 30 H 1.08999 * 109.47288 * 300.00076 * 5 4 3 31 31 H 1.09001 * 109.47141 * 60.00014 * 5 4 3 32 32 H 0.96996 * 120.00171 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.07186 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.92327 * 180.25196 * 19 18 17 35 35 H 1.08998 * 109.46858 * 59.99696 * 22 21 20 36 36 H 1.08999 * 109.47130 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.46805 * 299.99753 * 22 21 20 38 38 H 1.09003 * 109.47585 * 59.99699 * 23 21 20 39 39 H 1.08999 * 109.47148 * 179.97438 * 23 21 20 40 40 H 1.09003 * 109.47287 * 299.99402 * 23 21 20 41 41 H 1.08998 * 109.46993 * 60.00546 * 24 21 20 42 42 H 1.09002 * 109.47036 * 179.97438 * 24 21 20 43 43 H 1.08996 * 109.47526 * 300.00163 * 24 21 20 44 44 H 1.07992 * 119.92737 * 179.97438 * 25 20 19 45 45 H 1.08001 * 120.07488 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2901 1.0881 0.0000 4 16 1.7914 2.7780 -0.0006 5 6 3.4120 3.5841 -0.0011 6 6 3.2291 5.0800 -0.0023 7 1 2.2351 5.5025 -0.0023 8 6 4.3305 5.9092 -0.0023 9 7 5.5410 5.3948 -0.0017 10 14 4.1038 7.7634 -0.0031 11 1 4.0433 8.2553 1.3968 12 1 5.2475 8.4017 -0.7030 13 1 2.8404 8.1072 -0.7036 14 7 3.5259 0.6398 -0.0006 15 7 3.5290 -0.6452 -0.0014 16 6 2.2963 -1.0963 -0.0010 17 6 1.8798 -2.5149 -0.0022 18 6 2.7685 -3.5067 0.4157 19 6 2.3718 -4.8280 0.4170 20 6 1.0998 -5.1720 -0.0049 21 6 0.6751 -6.6179 -0.0057 22 6 0.3042 -7.0397 -1.4289 23 6 1.8273 -7.4881 0.5001 24 6 -0.5374 -6.7937 0.9107 25 6 0.2158 -4.1942 -0.4257 26 6 0.5980 -2.8687 -0.4265 27 1 -0.3633 -0.1140 -1.0212 28 1 -0.3633 -0.8274 0.6094 29 1 -0.3634 0.9415 0.4120 30 1 3.9663 3.2862 0.8890 31 1 3.9661 3.2855 -0.8910 32 1 6.3159 5.9781 -0.0021 33 1 3.7630 -3.2398 0.7415 34 1 3.0571 -5.5960 0.7440 35 1 1.1681 -6.9144 -2.0817 36 1 -0.0025 -8.0857 -1.4295 37 1 -0.5166 -6.4197 -1.7893 38 1 2.0917 -7.1877 1.5140 39 1 1.5200 -8.5339 0.5000 40 1 2.6911 -7.3629 -0.1529 41 1 -1.3583 -6.1737 0.5502 42 1 -0.8450 -7.8394 0.9098 43 1 -0.2733 -6.4932 1.9246 44 1 -0.7754 -4.4694 -0.7542 45 1 -0.0930 -2.1064 -0.7549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005857387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:32 Heat of formation + Delta-G solvation = 65.463406 kcal Electronic energy + Delta-G solvation = -24738.206917 eV Core-core repulsion = 21267.800812 eV Total energy + Delta-G solvation = -3470.406105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.90119 -40.79743 -37.48710 -36.10755 -35.32496 -32.89584 -32.17993 -30.86098 -29.85022 -28.73091 -28.19007 -28.03808 -25.47936 -24.66485 -24.11065 -22.83610 -22.09180 -20.20762 -19.23933 -18.47541 -17.72487 -17.54482 -17.19530 -16.63448 -16.32904 -15.95168 -15.45915 -15.12542 -14.99065 -14.77119 -14.63741 -14.41435 -14.38397 -14.31187 -13.97795 -13.75783 -13.28847 -13.00015 -12.93539 -12.75269 -12.73674 -12.65668 -12.48668 -12.43000 -12.33688 -11.87167 -11.75316 -11.65359 -11.58283 -11.42689 -11.37898 -11.21637 -11.16218 -10.74842 -9.96568 -9.58554 -8.54639 -8.33316 -6.51980 -0.26978 0.14222 0.39566 0.80612 1.36070 1.42054 1.44613 1.55800 1.63023 1.70001 2.36482 2.76026 3.01042 3.11477 3.53926 3.65613 3.74339 3.93981 3.96669 4.15552 4.18575 4.23065 4.36280 4.37035 4.42486 4.46922 4.65673 4.79215 4.83555 4.84509 4.85144 4.86736 4.96245 5.00404 5.02629 5.08192 5.09447 5.11578 5.26624 5.37447 5.44891 5.47367 5.49768 5.51356 5.66865 5.69246 5.77110 5.92574 6.57252 7.17837 7.47189 8.78904 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.037924 B = 0.002083 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.143023 B =13441.653670 C =13951.320433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.461 5.461 3 C 0.158 3.842 4 S 0.004 5.996 5 C 0.078 3.922 6 C -0.545 4.545 7 H 0.078 0.922 8 C 0.013 3.987 9 N -0.923 5.923 10 Si 0.986 3.014 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.256 1.256 14 N -0.338 5.338 15 N -0.319 5.319 16 C 0.220 3.780 17 C -0.040 4.040 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.053 4.053 21 C -0.030 4.030 22 C -0.139 4.139 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.108 4.108 26 C -0.104 4.104 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.271 0.729 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.157 0.843 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 -26.836 -0.150 32.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.154 5.154 3 C -0.217 4.217 4 S 0.233 5.767 5 C -0.071 4.071 6 C -0.584 4.584 7 H 0.096 0.904 8 C -0.189 4.189 9 N -0.561 5.561 10 Si 0.808 3.192 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.180 1.180 14 N -0.182 5.182 15 N -0.159 5.159 16 C -0.048 4.048 17 C -0.043 4.043 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.054 4.054 21 C -0.030 4.030 22 C -0.196 4.196 23 C -0.206 4.206 24 C -0.195 4.195 25 C -0.125 4.125 26 C -0.123 4.123 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.175 0.825 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.659 -26.270 -0.153 31.654 hybrid contribution 0.901 0.694 0.060 1.139 sum -16.758 -25.576 -0.093 30.577 Atomic orbital electron populations 1.22778 0.72182 1.07101 1.06338 1.46585 1.10090 1.03325 1.55422 1.27356 0.89986 0.97530 1.06821 1.84707 1.16012 0.84218 1.91736 1.20917 0.89078 0.97876 0.99193 1.20966 0.94281 0.88844 1.54321 0.90350 1.26063 0.94147 1.05218 0.93428 1.70141 0.98939 1.38004 1.49016 0.85144 0.78492 0.76707 0.78874 1.19259 1.20441 1.18000 1.74737 1.17890 1.03560 1.22032 1.74147 1.19030 1.02917 1.19826 1.23532 0.86258 0.90491 1.04478 1.17590 0.96550 0.84609 1.05517 1.21233 0.98891 0.92840 0.97827 1.21311 0.97130 0.94909 1.00351 1.20318 0.93146 0.96284 0.95638 1.19601 0.96768 0.89445 0.97206 1.21906 1.01569 1.02139 0.93982 1.22010 0.97515 0.99874 1.01161 1.21898 0.96264 1.02732 0.98605 1.21149 1.00920 0.90851 0.99621 1.21560 0.93854 0.98310 0.98605 0.87084 0.86043 0.87900 0.96455 0.96423 0.91998 0.86494 0.83409 0.93240 0.91017 0.91729 0.92253 0.91116 0.92406 0.91661 0.91084 0.93024 0.82548 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 9.31 127.77 1.19 2.28 16 2 N -0.46 -15.36 3.24 -538.17 -1.74 -17.10 16 3 C 0.16 6.86 8.07 179.50 1.45 8.31 16 4 S 0.00 0.18 21.59 -56.49 -1.22 -1.04 16 5 C 0.08 4.37 4.99 71.24 0.36 4.73 16 6 C -0.54 -30.90 9.13 25.60 0.23 -30.67 16 7 H 0.08 4.17 7.71 -2.91 -0.02 4.14 16 8 C 0.01 0.75 5.46 84.65 0.46 1.21 16 9 N -0.92 -56.55 13.29 21.45 0.28 -56.27 16 10 Si 0.99 43.33 29.54 68.60 2.03 45.35 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 14 N -0.34 -17.07 11.59 -56.75 -0.66 -17.73 16 15 N -0.32 -14.43 12.03 -50.79 -0.61 -15.04 16 16 C 0.22 7.82 7.68 136.21 1.05 8.86 16 17 C -0.04 -1.05 5.86 -20.09 -0.12 -1.17 16 18 C -0.09 -2.17 9.71 22.53 0.22 -1.95 16 19 C -0.12 -2.14 8.96 22.23 0.20 -1.94 16 20 C -0.05 -0.76 4.77 -19.81 -0.09 -0.85 16 21 C -0.03 -0.29 0.85 -52.93 -0.05 -0.34 16 22 C -0.14 -1.15 8.29 71.98 0.60 -0.55 16 23 C -0.15 -1.34 7.13 71.98 0.51 -0.83 16 24 C -0.14 -1.06 8.29 71.98 0.60 -0.46 16 25 C -0.11 -1.46 8.69 22.23 0.19 -1.27 16 26 C -0.10 -1.87 8.71 22.53 0.20 -1.67 16 27 H 0.11 1.58 7.70 -2.39 -0.02 1.56 16 28 H 0.12 1.64 6.71 -2.39 -0.02 1.63 16 29 H 0.10 1.94 7.67 -2.38 -0.02 1.92 16 30 H 0.02 1.06 8.14 -2.40 -0.02 1.04 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.12 3.25 7.99 -2.91 -0.02 3.22 16 34 H 0.15 2.11 5.87 -2.91 -0.02 2.09 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.06 0.46 7.37 -2.39 -0.02 0.44 16 38 H 0.06 0.56 7.50 -2.39 -0.02 0.54 16 39 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.06 0.57 7.51 -2.39 -0.02 0.55 16 41 H 0.06 0.42 7.38 -2.39 -0.02 0.40 16 42 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.16 1.19 7.08 -2.91 -0.02 1.17 16 45 H 0.15 1.99 5.11 -2.91 -0.01 1.97 16 Total: -1.00 -77.36 379.38 6.07 -71.29 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.99 Total: 6.86 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 6.99 Total: -16.32 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -2.72 Total: -106.15 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -1.22 Total: -1.04 kcal Total: -77.36 6.07 -71.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005857387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.757 kcal (2) G-P(sol) polarization free energy of solvation -77.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds