Wall clock time and date at job start Tue Mar 31 2020 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.53055 * 2 1 4 4 N 1.47305 * 110.60143 * 237.16921 * 2 1 3 5 5 C 1.34860 * 106.44027 * 241.52296 * 4 2 1 6 6 O 1.21543 * 123.73181 * 179.97438 * 5 4 2 7 7 N 1.33791 * 112.49828 * 359.86198 * 5 4 2 8 8 C 1.46500 * 124.17632 * 180.12879 * 7 5 4 9 9 C 1.50701 * 109.47181 * 269.95865 * 8 7 5 10 10 O 1.21284 * 119.99777 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00631 * 179.97438 * 9 8 7 12 12 C 1.39230 * 120.00540 * 175.70938 * 11 9 8 13 13 C 1.39483 * 119.83542 * 215.02045 * 12 11 9 14 14 C 1.36377 * 120.17195 * 179.71711 * 13 12 11 15 15 C 1.40870 * 119.82275 * 0.56934 * 14 13 12 16 16 C 1.41154 * 120.16375 * 179.67969 * 15 14 13 17 17 H 1.07995 * 120.00339 * 214.80833 * 16 15 14 18 18 C 1.39913 * 119.99741 * 34.80269 * 16 15 14 19 19 N 1.30866 * 119.99793 * 355.55846 * 18 16 15 20 20 Si 1.86802 * 119.99826 * 175.56399 * 18 16 15 21 21 H 1.48491 * 109.47148 * 89.99795 * 20 18 16 22 22 H 1.48499 * 109.47029 * 209.99948 * 20 18 16 23 23 H 1.48498 * 109.46746 * 329.99598 * 20 18 16 24 24 C 1.40865 * 119.67426 * 359.70272 * 15 14 13 25 25 C 1.36373 * 119.83105 * 359.97438 * 24 15 14 26 26 C 1.34762 * 111.64673 * 0.08875 * 7 5 4 27 27 O 1.21238 * 127.15884 * 180.02562 * 26 7 5 28 28 H 1.08998 * 109.47267 * 59.30300 * 1 2 3 29 29 H 1.08998 * 109.47083 * 179.30080 * 1 2 3 30 30 H 1.09000 * 109.46966 * 299.30147 * 1 2 3 31 31 H 1.08998 * 109.47309 * 60.70297 * 3 2 1 32 32 H 1.09004 * 109.47302 * 180.70126 * 3 2 1 33 33 H 1.08996 * 109.47204 * 300.69644 * 3 2 1 34 34 H 0.97007 * 126.69132 * 61.43664 * 4 2 1 35 35 H 1.09003 * 109.47433 * 29.95406 * 8 7 5 36 36 H 1.08996 * 109.47728 * 149.95885 * 8 7 5 37 37 H 0.97003 * 119.99399 * 355.70810 * 11 9 8 38 38 H 1.08000 * 119.91448 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.08718 * 180.25272 * 14 13 12 40 40 H 0.97008 * 120.00021 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.08469 * 179.97438 * 24 15 14 42 42 H 1.08003 * 119.91799 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 7 2.0484 -0.7476 -1.1586 5 6 2.7600 -1.7790 -0.6601 6 8 3.3292 -2.6021 -1.3497 7 7 2.7715 -1.7937 0.6777 8 6 3.4688 -2.7990 1.4836 9 6 2.5396 -3.9524 1.7620 10 8 1.4066 -3.9364 1.3293 11 7 2.9677 -5.0021 2.4908 12 6 2.0842 -6.0253 2.8237 13 6 2.2011 -6.6700 4.0551 14 6 1.3357 -7.6692 4.3906 15 6 0.3294 -8.0579 3.4847 16 6 -0.5659 -9.0959 3.8217 17 1 -0.9272 -9.7671 3.0567 18 6 -0.9852 -9.2552 5.1470 19 7 -0.4814 -8.4982 6.0882 20 14 -2.2640 -10.5485 5.5730 21 1 -1.5847 -11.8290 5.8952 22 1 -3.0523 -10.0971 6.7477 23 1 -3.1716 -10.7474 4.4147 24 6 0.2212 -7.4061 2.2406 25 6 1.0897 -6.4041 1.9220 26 6 2.0634 -0.7692 1.1923 27 8 1.8894 -0.5152 2.3650 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.7232 1.9494 0.8962 32 1 3.1564 1.4127 -0.0126 33 1 1.7028 1.9570 -0.8836 34 1 1.9042 -0.5386 -2.0949 35 1 4.3419 -3.1592 0.9395 36 1 3.7864 -2.3529 2.4260 37 1 3.8916 -5.0447 2.7835 38 1 2.9763 -6.3742 4.7464 39 1 1.4249 -8.1646 5.3461 40 1 -0.7718 -8.6089 7.0071 41 1 -0.5476 -7.6991 1.5409 42 1 1.0083 -5.9037 0.9684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006544978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:13 Heat of formation + Delta-G solvation = -49.246174 kcal Electronic energy + Delta-G solvation = -27945.201946 eV Core-core repulsion = 23891.235695 eV Total energy + Delta-G solvation = -4053.966251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.72474 -39.66446 -38.75801 -37.37417 -36.72735 -35.33945 -34.43714 -32.96945 -31.74359 -29.78892 -29.46289 -28.23493 -27.92135 -25.02202 -24.30589 -22.53969 -21.56870 -21.00327 -20.49089 -19.71832 -18.17787 -17.63843 -17.25793 -16.88040 -16.29263 -16.06229 -15.90500 -15.52920 -15.13154 -14.89411 -14.69609 -14.30363 -14.00432 -13.89439 -13.41228 -13.17552 -13.03483 -12.68565 -12.65894 -12.63087 -12.35909 -12.09635 -11.97169 -11.70638 -11.38144 -11.16383 -10.99891 -10.98500 -10.73996 -10.45531 -10.30877 -9.96514 -9.75813 -9.49464 -9.44069 -9.10054 -8.89410 -7.55014 -6.88077 -6.62007 -4.34603 1.47122 1.89753 2.48601 2.80217 2.87224 2.97893 3.08589 3.10225 3.14108 3.29900 3.60665 3.72073 3.98203 4.17181 4.38742 4.68159 4.74828 4.89723 4.99682 5.05224 5.11834 5.16477 5.27540 5.30537 5.49763 5.54395 5.65280 5.77095 6.18859 6.43785 6.55394 6.71971 6.83433 6.89418 7.06023 7.18346 7.19663 7.28913 7.63521 7.70889 7.83587 7.94830 8.05716 8.21863 8.30972 8.58989 8.67866 8.92557 8.98942 10.29016 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.002558 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.454720 B =10943.252535 C =11184.844910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 C -0.145 4.145 4 N -0.721 5.721 5 C 0.710 3.290 6 O -0.539 6.539 7 N -0.559 5.559 8 C 0.100 3.900 9 C 0.486 3.514 10 O -0.521 6.521 11 N -0.644 5.644 12 C 0.002 3.998 13 C -0.118 4.118 14 C -0.142 4.142 15 C 0.101 3.899 16 C -0.460 4.460 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.811 5.811 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.206 4.206 25 C -0.083 4.083 26 C 0.535 3.465 27 O -0.459 6.459 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.439 0.561 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.398 0.602 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.278 0.722 41 H 0.096 0.904 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 18.077 -8.923 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 C -0.204 4.204 4 N -0.387 5.387 5 C 0.411 3.589 6 O -0.412 6.412 7 N -0.304 5.304 8 C -0.026 4.026 9 C 0.270 3.730 10 O -0.397 6.397 11 N -0.288 5.288 12 C -0.091 4.091 13 C -0.138 4.138 14 C -0.162 4.162 15 C 0.098 3.902 16 C -0.491 4.491 17 H 0.094 0.906 18 C -0.146 4.146 19 N -0.438 5.438 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.226 4.226 25 C -0.103 4.103 26 C 0.321 3.679 27 O -0.327 6.327 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.283 0.717 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.231 0.769 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.659 17.780 -8.617 20.850 hybrid contribution -0.257 -0.482 0.099 0.555 sum 6.402 17.298 -8.518 20.317 Atomic orbital electron populations 1.22021 0.89947 1.04568 1.04175 1.21447 0.97499 0.93975 0.84096 1.22002 1.01951 0.91960 1.04456 1.45674 1.55074 1.28981 1.08922 1.15828 0.79633 0.82002 0.81454 1.91019 1.48514 1.40845 1.60838 1.45800 1.49564 1.27271 1.07763 1.21484 0.95311 0.88163 0.97623 1.20599 0.88647 0.83489 0.80224 1.90705 1.19635 1.79211 1.50137 1.42842 1.12877 1.19925 1.53129 1.17243 0.99245 0.96207 0.96367 1.20310 1.00687 0.99388 0.93436 1.21197 0.94315 0.99074 1.01603 1.17732 0.90332 0.91437 0.90656 1.19504 1.23477 1.12557 0.93563 0.90596 1.25888 0.96904 0.95773 0.96017 1.69760 1.37770 1.34458 1.01833 0.86189 0.80516 0.80516 0.78714 1.19507 1.20294 1.18731 1.20802 1.01936 0.99928 0.99912 1.20388 0.95598 0.96670 0.97658 1.20770 0.76790 0.80289 0.90013 1.90809 1.55855 1.69436 1.16613 0.90281 0.90719 0.89752 0.89687 0.91417 0.90201 0.71670 0.85757 0.85853 0.76870 0.88963 0.84962 0.91122 0.88607 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.98 37.16 0.33 -0.87 16 2 C 0.12 1.06 1.37 -132.10 -0.18 0.87 16 3 C -0.15 -0.81 8.98 37.16 0.33 -0.47 16 4 N -0.72 -6.59 5.93 -52.85 -0.31 -6.90 16 5 C 0.71 9.52 8.63 -87.72 -0.76 8.76 16 6 O -0.54 -8.95 17.48 5.33 0.09 -8.86 16 7 N -0.56 -7.47 2.09 -121.93 -0.26 -7.72 16 8 C 0.10 1.26 6.18 -5.19 -0.03 1.23 16 9 C 0.49 8.65 7.73 -10.98 -0.08 8.56 16 10 O -0.52 -11.53 13.85 5.55 0.08 -11.45 16 11 N -0.64 -11.31 5.30 -9.74 -0.05 -11.36 16 12 C 0.00 0.03 6.31 -83.57 -0.53 -0.49 16 13 C -0.12 -2.71 9.90 -39.79 -0.39 -3.10 16 14 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 15 C 0.10 2.74 5.55 -106.80 -0.59 2.15 16 16 C -0.46 -12.41 9.03 -37.85 -0.34 -12.75 16 17 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 18 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 19 N -0.81 -21.25 10.60 55.55 0.59 -20.67 16 20 Si 0.92 19.17 29.56 -169.99 -5.03 14.15 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 24 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16 25 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 26 C 0.54 6.84 6.98 -10.56 -0.07 6.76 16 27 O -0.46 -6.97 17.76 5.59 0.10 -6.87 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.44 2.76 8.96 -40.82 -0.37 2.40 16 35 H 0.12 1.28 7.86 -51.93 -0.41 0.87 16 36 H 0.12 1.24 8.00 -51.93 -0.42 0.83 16 37 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.13 3.53 6.13 -52.49 -0.32 3.20 16 40 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 41 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 42 H 0.11 2.62 6.22 -52.48 -0.33 2.29 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -35.49 363.02 -7.92 -43.40 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.13 Total: 10.60 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.47 Total: 0.21 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.03 Total: -46.65 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: 0.27 Total: -27.18 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.49 -7.92 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006544978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.843 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds