Wall clock time and date at job start Tue Mar 31 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47436 * 2 1 4 4 C 1.36736 * 127.15156 * 86.48688 * 3 2 1 5 5 S 1.76197 * 126.39288 * 359.97438 * 4 3 2 6 6 C 1.76199 * 100.00253 * 179.71263 * 5 4 3 7 7 H 1.08002 * 119.99609 * 0.02562 * 6 5 4 8 8 C 1.38633 * 119.99995 * 180.02562 * 6 5 4 9 9 N 1.31653 * 120.00321 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46732 * 59.99950 * 10 8 6 12 12 H 1.48495 * 109.47131 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.46890 * 300.00245 * 10 8 6 14 14 N 1.31573 * 107.21726 * 179.74164 * 4 3 2 15 15 N 1.28519 * 110.03041 * 0.23422 * 14 4 3 16 16 C 1.31493 * 109.94547 * 0.02562 * 15 14 4 17 17 C 1.47789 * 126.44017 * 179.97438 * 16 15 14 18 18 C 1.39616 * 120.14537 * 198.85560 * 17 16 15 19 19 C 1.37945 * 119.84915 * 179.70602 * 18 17 16 20 20 C 1.38370 * 120.14710 * 0.56588 * 19 18 17 21 21 C 1.50697 * 119.85251 * 179.74670 * 20 19 18 22 22 C 1.52995 * 109.47271 * 239.98182 * 21 20 19 23 23 C 1.53005 * 109.47120 * 359.97438 * 21 20 19 24 24 C 1.52996 * 109.47061 * 119.98066 * 21 20 19 25 25 C 1.38369 * 120.29954 * 359.73061 * 20 19 18 26 26 C 1.37947 * 120.14918 * 359.97218 * 25 20 19 27 27 H 1.08998 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46750 * 299.99598 * 1 2 3 29 29 H 1.08997 * 109.47261 * 59.99700 * 1 2 3 30 30 H 1.09004 * 109.46750 * 240.00402 * 2 1 3 31 31 H 1.09002 * 109.47662 * 120.00542 * 2 1 3 32 32 H 0.96993 * 119.99971 * 180.02562 * 9 8 6 33 33 H 1.08009 * 120.07603 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.93047 * 180.27832 * 19 18 17 35 35 H 1.09003 * 109.47416 * 60.00127 * 22 21 20 36 36 H 1.09000 * 109.47006 * 179.97438 * 22 21 20 37 37 H 1.09003 * 109.47301 * 299.99669 * 22 21 20 38 38 H 1.08996 * 109.46759 * 59.99924 * 23 21 20 39 39 H 1.08994 * 109.47091 * 179.97438 * 23 21 20 40 40 H 1.08995 * 109.46758 * 300.00110 * 23 21 20 41 41 H 1.09002 * 109.47625 * 60.00129 * 24 21 20 42 42 H 1.09008 * 109.47233 * 180.02562 * 24 21 20 43 43 H 1.09006 * 109.47471 * 299.99896 * 24 21 20 44 44 H 1.07997 * 119.92626 * 179.97438 * 25 20 19 45 45 H 1.07996 * 120.08236 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2307 2.1820 1.0878 5 16 1.9661 1.7462 2.7744 6 6 2.4552 3.2464 3.5585 7 1 2.7931 4.0816 2.9630 8 6 2.4062 3.3545 4.9397 9 7 1.9948 2.3362 5.6656 10 14 2.9240 4.9453 5.7710 11 1 2.0625 6.0565 5.2933 12 1 2.7795 4.8048 7.2422 13 1 4.3410 5.2392 5.4381 14 7 2.6743 3.3371 0.6404 15 7 2.7480 3.3133 -0.6425 16 6 2.3554 2.1419 -1.0927 17 6 2.2941 1.7211 -2.5081 18 6 1.5094 0.6282 -2.8812 19 6 1.4519 0.2444 -4.2050 20 6 2.1787 0.9327 -5.1603 21 6 2.1154 0.5042 -6.6037 22 6 3.5172 0.1245 -7.0849 23 6 1.1861 -0.7040 -6.7367 24 6 1.5788 1.6567 -7.4548 25 6 2.9632 2.0129 -4.7964 26 6 3.0250 2.4110 -3.4771 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9602 2.4120 6.6320 33 1 0.9454 0.0872 -2.1358 34 1 0.8418 -0.5980 -4.4958 35 1 3.8996 -0.6967 -6.4786 36 1 3.4713 -0.1859 -8.1288 37 1 4.1795 0.9851 -6.9902 38 1 0.1874 -0.4336 -6.3938 39 1 1.1399 -1.0136 -7.7807 40 1 1.5685 -1.5250 -6.1304 41 1 2.2409 2.5174 -7.3600 42 1 1.5326 1.3466 -8.4988 43 1 0.5800 1.9273 -7.1120 44 1 3.5283 2.5455 -5.5469 45 1 3.6373 3.2545 -3.1943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020992378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:39 Heat of formation + Delta-G solvation = 79.514746 kcal Electronic energy + Delta-G solvation = -25376.782685 eV Core-core repulsion = 21906.985891 eV Total energy + Delta-G solvation = -3469.796793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.141 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.01144 -39.87325 -36.66165 -35.31424 -32.66976 -31.48894 -31.17950 -30.23851 -28.43757 -27.62428 -27.51489 -25.69870 -24.20079 -23.35475 -22.65493 -21.21725 -20.57664 -19.42752 -18.01595 -17.25594 -16.21802 -15.70157 -15.53150 -15.36761 -14.93870 -14.69854 -14.53464 -14.49810 -14.05730 -13.81653 -13.21314 -13.07777 -13.03321 -12.85451 -12.49828 -12.32050 -12.26498 -12.06252 -11.96512 -11.52833 -11.41651 -11.32941 -11.21842 -11.12044 -11.09989 -10.82299 -10.66664 -10.59847 -10.21294 -9.90194 -9.81558 -9.62798 -9.16593 -8.97693 -8.87910 -8.24200 -6.73690 -6.47781 -4.21738 0.96358 1.37413 2.44347 2.50269 3.22680 3.22788 3.26013 3.32593 3.47481 3.92753 4.00951 4.32434 4.47695 4.55982 4.71397 4.72302 4.90408 4.94173 4.96136 5.01994 5.04367 5.05359 5.24657 5.27252 5.33687 5.34070 5.46705 5.47797 5.58712 5.59629 5.62853 5.66192 5.70152 5.78026 5.85466 5.88028 5.97894 6.02709 6.09980 6.17237 6.26957 6.41956 6.53461 6.66884 6.72835 6.90011 7.36616 7.56688 8.36568 9.04412 9.43151 10.60441 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.002555 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.514185 B =10955.632066 C =11674.984244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 N -0.472 5.472 4 C 0.174 3.826 5 S 0.139 5.861 6 C -0.533 4.533 7 H 0.105 0.895 8 C 0.076 3.924 9 N -0.879 5.879 10 Si 0.933 3.067 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.269 1.269 14 N -0.305 5.305 15 N -0.272 5.272 16 C 0.169 3.831 17 C 0.009 3.991 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.073 4.073 21 C -0.029 4.029 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.112 4.112 26 C -0.083 4.083 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.274 0.726 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.124 0.876 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 -9.416 -22.601 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 N -0.169 5.169 4 C -0.196 4.196 5 S 0.371 5.629 6 C -0.681 4.681 7 H 0.123 0.877 8 C -0.133 4.133 9 N -0.514 5.514 10 Si 0.758 3.242 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.194 1.194 14 N -0.151 5.151 15 N -0.114 5.114 16 C -0.097 4.097 17 C 0.006 3.994 18 C -0.147 4.147 19 C -0.135 4.135 20 C -0.074 4.074 21 C -0.029 4.029 22 C -0.196 4.196 23 C -0.201 4.201 24 C -0.196 4.196 25 C -0.130 4.130 26 C -0.103 4.103 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.142 0.858 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.224 -9.064 -21.776 23.691 hybrid contribution 0.235 0.709 0.132 0.758 sum -1.989 -8.355 -21.644 23.286 Atomic orbital electron populations 1.22249 0.94061 1.03199 1.03877 1.21971 0.95842 0.79810 1.04808 1.46357 1.52274 1.13104 1.05151 1.28413 1.02192 0.90364 0.98584 1.83378 1.77304 1.21684 0.80505 1.23162 1.51155 0.99908 0.93909 0.87744 1.25060 0.93975 0.98373 0.95928 1.69940 1.43928 1.30506 1.07020 0.85967 0.79701 0.81190 0.77321 1.19428 1.20793 1.19424 1.74776 1.21352 1.17633 1.01339 1.74228 1.16614 1.15995 1.04548 1.22591 1.07888 0.90460 0.88755 1.17506 0.98377 0.96119 0.87403 1.21603 0.99285 0.96870 0.96892 1.21001 1.00027 1.00397 0.92065 1.19866 0.97109 0.95797 0.94653 1.19495 0.96236 0.95786 0.91410 1.21894 0.95181 1.01754 1.00750 1.21967 0.99251 0.97174 1.01747 1.21897 1.01338 0.97448 0.98921 1.20867 0.99464 0.97015 0.95622 1.21184 0.98000 0.99270 0.91848 0.90340 0.90545 0.91901 0.88666 0.88341 0.91582 0.84983 0.85424 0.92448 0.92448 0.92325 0.92206 0.92454 0.92208 0.92310 0.92452 0.92425 0.85830 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.60 37.16 0.36 -1.77 16 2 C 0.10 1.38 5.84 -4.04 -0.02 1.36 16 3 N -0.47 -9.06 2.83 -114.03 -0.32 -9.38 16 4 C 0.17 4.11 8.06 -87.91 -0.71 3.40 16 5 S 0.14 3.44 21.47 -107.50 -2.31 1.13 16 6 C -0.53 -14.99 9.37 30.88 0.29 -14.70 16 7 H 0.10 3.05 6.92 -52.49 -0.36 2.68 16 8 C 0.08 2.07 5.49 -17.48 -0.10 1.97 16 9 N -0.88 -24.45 13.22 55.48 0.73 -23.72 16 10 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 N -0.31 -7.84 11.03 30.77 0.34 -7.50 16 15 N -0.27 -6.30 12.03 32.57 0.39 -5.91 16 16 C 0.17 3.30 7.69 -153.82 -1.18 2.12 16 17 C 0.01 0.14 5.86 -104.96 -0.62 -0.48 16 18 C -0.13 -1.58 8.63 -39.18 -0.34 -1.91 16 19 C -0.12 -1.21 8.96 -39.64 -0.36 -1.56 16 20 C -0.07 -0.73 4.77 -104.53 -0.50 -1.23 16 21 C -0.03 -0.22 0.85 -155.66 -0.13 -0.36 16 22 C -0.14 -0.97 8.28 37.16 0.31 -0.66 16 23 C -0.14 -0.94 7.13 37.16 0.26 -0.67 16 24 C -0.14 -0.98 8.29 37.16 0.31 -0.68 16 25 C -0.11 -1.23 8.69 -39.64 -0.34 -1.58 16 26 C -0.08 -1.15 9.71 -39.17 -0.38 -1.53 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.75 6.94 -51.93 -0.36 0.39 16 30 H 0.10 1.09 5.82 -51.93 -0.30 0.79 16 31 H 0.10 1.36 7.97 -51.93 -0.41 0.94 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.13 1.48 3.31 -52.48 -0.17 1.31 16 34 H 0.13 1.03 5.87 -52.49 -0.31 0.72 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.41 7.37 -51.93 -0.38 0.03 16 38 H 0.06 0.39 7.50 -51.93 -0.39 0.00 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.38 7.51 -51.93 -0.39 -0.01 16 41 H 0.06 0.42 7.38 -51.93 -0.38 0.03 16 42 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.12 1.11 7.08 -52.49 -0.37 0.74 16 45 H 0.13 1.92 7.98 -52.49 -0.42 1.50 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -32.28 375.60 -10.03 -42.31 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.35 Total: -0.72 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.15 Total: -18.28 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 1.14 Total: -46.51 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.31 Total: 1.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.28 -10.03 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020992378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.826 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds