Wall clock time and date at job start Tue Mar 31 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 C 1.53003 * 109.46922 * 119.99708 * 2 1 3 5 5 H 1.08998 * 109.46898 * 185.33776 * 4 2 1 6 6 N 1.46900 * 109.46765 * 65.34072 * 4 2 1 7 7 C 1.46893 * 111.00033 * 80.61237 * 6 4 2 8 8 C 1.50707 * 109.47177 * 184.87566 * 7 6 4 9 9 C 1.38301 * 119.92819 * 89.99784 * 8 7 6 10 10 C 1.38096 * 120.06852 * 180.02562 * 9 8 7 11 11 C 1.38882 * 119.93016 * 359.97301 * 10 9 8 12 12 O 1.35756 * 120.06471 * 180.02562 * 11 10 9 13 13 C 1.34824 * 117.00472 * 5.69834 * 12 11 10 14 14 H 1.08008 * 120.00042 * 354.93073 * 13 12 11 15 15 C 1.38649 * 120.00264 * 174.93714 * 13 12 11 16 16 N 1.31561 * 120.00027 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00241 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47159 * 59.99739 * 17 15 13 19 19 H 1.48498 * 109.47162 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46983 * 299.99991 * 17 15 13 21 21 C 1.38878 * 119.86217 * 0.28435 * 11 10 9 22 22 C 1.38095 * 119.92889 * 359.48644 * 21 11 10 23 23 C 1.50699 * 109.47255 * 305.34085 * 4 2 1 24 24 C 1.33388 * 125.19843 * 259.72016 * 23 4 2 25 25 C 1.38424 * 114.91827 * 179.86183 * 24 23 4 26 26 C 1.33386 * 114.92314 * 0.42302 * 25 24 23 27 27 S 1.75878 * 125.20442 * 80.02522 * 23 4 2 28 28 H 1.09000 * 109.47589 * 300.00386 * 1 2 3 29 29 H 1.09003 * 109.46961 * 60.00205 * 1 2 3 30 30 H 1.09001 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47074 * 240.00075 * 2 1 3 32 32 H 1.09002 * 109.46549 * 184.84184 * 3 2 1 33 33 H 1.08997 * 109.47364 * 304.83937 * 3 2 1 34 34 H 1.08999 * 109.47346 * 64.84480 * 3 2 1 35 35 H 1.00907 * 111.00156 * 316.65309 * 6 4 2 36 36 H 1.08999 * 109.47393 * 64.88170 * 7 6 4 37 37 H 1.08995 * 109.47400 * 304.87230 * 7 6 4 38 38 H 1.08004 * 119.96780 * 0.02562 * 9 8 7 39 39 H 1.08002 * 120.03455 * 179.97438 * 10 9 8 40 40 H 0.96996 * 120.00122 * 180.02562 * 16 15 13 41 41 H 1.07993 * 120.03444 * 179.72368 * 21 11 10 42 42 H 1.07996 * 119.96375 * 180.23369 * 22 21 11 43 43 H 1.07998 * 122.54650 * 0.02562 * 24 23 4 44 44 H 1.08002 * 122.54117 * 180.20024 * 25 24 23 45 45 H 1.08000 * 125.20749 * 179.74997 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1258 -0.6392 1.2984 6 7 1.6584 -2.1384 1.1866 7 6 2.5813 -2.8947 0.3298 8 6 2.0916 -4.3134 0.1933 9 6 1.2286 -4.6497 -0.8338 10 6 0.7776 -5.9487 -0.9613 11 6 1.1920 -6.9179 -0.0571 12 8 0.7508 -8.1959 -0.1801 13 6 0.0080 -8.4850 -1.2675 14 1 -0.2798 -7.6986 -1.9496 15 6 -0.3864 -9.7919 -1.5102 16 7 -0.0355 -10.7499 -0.6796 17 14 -1.4161 -10.1924 -3.0165 18 1 -0.6703 -9.8093 -4.2421 19 1 -1.7028 -11.6491 -3.0470 20 1 -2.6934 -9.4372 -2.9579 21 6 2.0544 -6.5759 0.9764 22 6 2.5056 -5.2762 1.0957 23 6 1.4326 -0.0912 2.4762 24 6 2.0440 0.7873 3.2722 25 6 1.2852 1.2327 4.3408 26 6 0.0607 0.7092 4.4176 27 16 -0.1881 -0.4075 3.0816 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1265 1.4437 -0.0867 33 1 1.6076 1.9808 -0.8434 34 1 1.7492 1.9307 0.9302 35 1 0.7053 -2.2427 0.8720 36 1 3.5751 -2.8950 0.7776 37 1 2.6265 -2.4297 -0.6549 38 1 0.9070 -3.8955 -1.5369 39 1 0.1034 -6.2106 -1.7633 40 1 -0.3111 -11.6643 -0.8496 41 1 2.3749 -7.3265 1.6837 42 1 3.1792 -5.0105 1.8969 43 1 3.0536 1.1274 3.0950 44 1 1.6576 1.9470 5.0601 45 1 -0.6665 0.9360 5.1831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035017456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:42 Heat of formation + Delta-G solvation = 24.384543 kcal Electronic energy + Delta-G solvation = -25102.722587 eV Core-core repulsion = 21598.242418 eV Total energy + Delta-G solvation = -3504.480169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.38223 -38.83294 -37.20931 -36.39217 -33.60418 -32.24998 -30.46294 -30.14330 -29.00061 -27.44889 -26.01385 -25.18909 -23.68714 -23.22265 -21.95375 -20.58828 -20.18645 -19.21807 -17.98531 -17.34910 -16.84106 -16.08148 -15.45414 -15.19931 -14.78388 -14.65088 -14.53611 -14.34242 -13.72659 -13.56213 -13.43476 -13.05238 -12.83865 -12.79580 -12.68954 -12.56316 -12.52308 -12.27673 -12.09096 -11.89421 -11.67170 -11.35453 -11.24825 -11.09170 -10.92727 -10.77250 -10.68857 -10.65804 -10.57148 -10.43171 -9.34047 -8.85812 -8.75499 -8.43407 -8.32250 -8.16241 -7.18454 -6.45184 -4.04164 0.94679 1.59940 2.00583 2.23219 2.27967 2.66192 3.12600 3.13508 3.16512 3.96332 4.15141 4.51572 4.58287 4.67756 4.77988 4.94338 4.98398 5.09739 5.25580 5.28000 5.33420 5.37743 5.39765 5.44754 5.47477 5.52188 5.64072 5.68191 5.74814 5.80798 5.85586 5.92126 5.98339 6.03999 6.08641 6.21999 6.23350 6.37830 6.43728 6.71324 6.89443 6.99047 7.06099 7.25815 7.33314 7.42556 7.45585 7.83506 7.99700 9.00259 9.70676 10.72764 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.002365 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.210491 B =11837.560765 C =12035.649465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.145 4.145 4 C 0.156 3.844 5 H 0.094 0.906 6 N -0.678 5.678 7 C 0.118 3.882 8 C -0.188 4.188 9 C -0.065 4.065 10 C -0.235 4.235 11 C 0.157 3.843 12 O -0.177 6.177 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.194 4.194 22 C -0.050 4.050 23 C -0.142 4.142 24 C -0.150 4.150 25 C -0.134 4.134 26 C -0.234 4.234 27 S 0.129 5.871 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.343 0.657 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.271 0.729 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 24.576 4.173 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.145 4.145 3 C -0.203 4.203 4 C 0.044 3.956 5 H 0.112 0.888 6 N -0.309 5.309 7 C -0.009 4.009 8 C -0.189 4.189 9 C -0.084 4.084 10 C -0.254 4.254 11 C 0.103 3.897 12 O -0.080 6.080 13 C -0.469 4.469 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.214 4.214 22 C -0.069 4.069 23 C -0.260 4.260 24 C -0.181 4.181 25 C -0.165 4.165 26 C -0.370 4.370 27 S 0.393 5.607 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.720 22.995 4.478 23.490 hybrid contribution 0.304 1.000 -1.102 1.519 sum 2.024 23.995 3.375 24.315 Atomic orbital electron populations 1.22104 0.94935 1.02210 1.02699 1.21787 0.96812 0.97382 0.98498 1.21811 1.00705 0.95571 1.02171 1.20115 0.99128 0.87494 0.88839 0.88784 1.60817 1.07112 1.07013 1.55989 1.20650 0.95617 0.90623 0.94031 1.19095 1.05728 0.94194 0.99912 1.20578 0.95962 0.95359 0.96505 1.21107 1.07262 0.93361 1.03685 1.19410 0.91414 0.85725 0.93161 1.83980 1.60190 1.21687 1.42184 1.21271 1.29997 0.94295 1.01293 0.89157 1.25285 0.97882 0.94380 0.98939 1.70029 1.43071 1.00948 1.35689 0.85790 0.79597 0.77980 0.80118 1.19523 1.20260 1.19502 1.20226 1.03237 0.96850 1.01063 1.20469 0.97870 0.91717 0.96848 1.24432 0.97738 1.02410 1.01425 1.19999 1.01469 1.00630 0.95957 1.20068 0.94012 1.02669 0.99702 1.25700 1.01835 1.04888 1.04573 1.84464 1.13188 1.43048 1.19982 0.91388 0.92280 0.92474 0.90481 0.92769 0.92759 0.92083 0.83581 0.90982 0.95100 0.88004 0.85671 0.91953 0.86567 0.87014 0.84785 0.84841 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.18 37.16 0.30 -1.18 16 2 C -0.12 -1.11 2.77 -90.62 -0.25 -1.36 16 3 C -0.14 -1.12 9.08 37.16 0.34 -0.79 16 4 C 0.16 1.58 2.24 -68.86 -0.15 1.42 16 5 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 6 N -0.68 -8.31 6.02 -109.22 -0.66 -8.97 16 7 C 0.12 1.54 5.63 -4.98 -0.03 1.51 16 8 C -0.19 -3.12 5.35 -104.57 -0.56 -3.68 16 9 C -0.07 -1.16 9.69 -39.61 -0.38 -1.55 16 10 C -0.23 -5.05 9.17 -39.40 -0.36 -5.41 16 11 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 12 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 13 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 14 H 0.09 2.33 5.21 -52.48 -0.27 2.05 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 17 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.19 -4.14 9.99 -39.40 -0.39 -4.53 16 22 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 23 C -0.14 -1.47 4.00 -36.00 -0.14 -1.61 16 24 C -0.15 -1.43 9.21 -41.21 -0.38 -1.81 16 25 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 26 C -0.23 -2.20 11.23 29.04 0.33 -1.87 16 27 S 0.13 1.36 20.56 -107.50 -2.21 -0.85 16 28 H 0.07 0.64 5.42 -51.67 -0.28 0.36 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 6.48 -51.93 -0.34 0.23 16 31 H 0.08 0.72 7.00 -51.93 -0.36 0.35 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.50 6.61 -51.93 -0.34 0.15 16 35 H 0.34 4.39 6.59 -39.29 -0.26 4.13 16 36 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.03 0.37 6.91 -51.93 -0.36 0.01 16 38 H 0.10 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -30.09 375.84 -10.30 -40.40 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.28 Total: 7.89 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -2.55 Total: -29.93 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.10 Total: -33.56 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.00 Total: -5.07 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.21 Total: -0.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.09 -10.30 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035017456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.781 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds