Wall clock time and date at job start Tue Mar 31 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 C 1.53003 * 109.46922 * 119.99708 * 2 1 3 5 5 H 1.08998 * 109.46898 * 185.33776 * 4 2 1 6 6 N 1.46900 * 109.46765 * 65.34072 * 4 2 1 7 7 C 1.46893 * 111.00033 * 80.61237 * 6 4 2 8 8 C 1.50707 * 109.47177 * 184.87566 * 7 6 4 9 9 C 1.38301 * 119.92819 * 89.99784 * 8 7 6 10 10 C 1.38096 * 120.06852 * 180.02562 * 9 8 7 11 11 C 1.38882 * 119.93016 * 359.97301 * 10 9 8 12 12 O 1.35756 * 120.06471 * 180.02562 * 11 10 9 13 13 C 1.34824 * 117.00472 * 5.69834 * 12 11 10 14 14 H 1.08008 * 120.00042 * 354.93073 * 13 12 11 15 15 C 1.38649 * 120.00264 * 174.93714 * 13 12 11 16 16 N 1.31561 * 120.00027 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00241 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47159 * 59.99739 * 17 15 13 19 19 H 1.48498 * 109.47162 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46983 * 299.99991 * 17 15 13 21 21 C 1.38878 * 119.86217 * 0.28435 * 11 10 9 22 22 C 1.38095 * 119.92889 * 359.48644 * 21 11 10 23 23 C 1.50699 * 109.47255 * 305.34085 * 4 2 1 24 24 C 1.33388 * 125.19843 * 259.72016 * 23 4 2 25 25 C 1.38424 * 114.91827 * 179.86183 * 24 23 4 26 26 C 1.33386 * 114.92314 * 0.42302 * 25 24 23 27 27 S 1.75878 * 125.20442 * 80.02522 * 23 4 2 28 28 H 1.09000 * 109.47589 * 300.00386 * 1 2 3 29 29 H 1.09003 * 109.46961 * 60.00205 * 1 2 3 30 30 H 1.09001 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47074 * 240.00075 * 2 1 3 32 32 H 1.09002 * 109.46549 * 184.84184 * 3 2 1 33 33 H 1.08997 * 109.47364 * 304.83937 * 3 2 1 34 34 H 1.08999 * 109.47346 * 64.84480 * 3 2 1 35 35 H 1.00907 * 111.00156 * 316.65309 * 6 4 2 36 36 H 1.08999 * 109.47393 * 64.88170 * 7 6 4 37 37 H 1.08995 * 109.47400 * 304.87230 * 7 6 4 38 38 H 1.08004 * 119.96780 * 0.02562 * 9 8 7 39 39 H 1.08002 * 120.03455 * 179.97438 * 10 9 8 40 40 H 0.96996 * 120.00122 * 180.02562 * 16 15 13 41 41 H 1.07993 * 120.03444 * 179.72368 * 21 11 10 42 42 H 1.07996 * 119.96375 * 180.23369 * 22 21 11 43 43 H 1.07998 * 122.54650 * 0.02562 * 24 23 4 44 44 H 1.08002 * 122.54117 * 180.20024 * 25 24 23 45 45 H 1.08000 * 125.20749 * 179.74997 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1258 -0.6392 1.2984 6 7 1.6584 -2.1384 1.1866 7 6 2.5813 -2.8947 0.3298 8 6 2.0916 -4.3134 0.1933 9 6 1.2286 -4.6497 -0.8338 10 6 0.7776 -5.9487 -0.9613 11 6 1.1920 -6.9179 -0.0571 12 8 0.7508 -8.1959 -0.1801 13 6 0.0080 -8.4850 -1.2675 14 1 -0.2798 -7.6986 -1.9496 15 6 -0.3864 -9.7919 -1.5102 16 7 -0.0355 -10.7499 -0.6796 17 14 -1.4161 -10.1924 -3.0165 18 1 -0.6703 -9.8093 -4.2421 19 1 -1.7028 -11.6491 -3.0470 20 1 -2.6934 -9.4372 -2.9579 21 6 2.0544 -6.5759 0.9764 22 6 2.5056 -5.2762 1.0957 23 6 1.4326 -0.0912 2.4762 24 6 2.0440 0.7873 3.2722 25 6 1.2852 1.2327 4.3408 26 6 0.0607 0.7092 4.4176 27 16 -0.1881 -0.4075 3.0816 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1265 1.4437 -0.0867 33 1 1.6076 1.9808 -0.8434 34 1 1.7492 1.9307 0.9302 35 1 0.7053 -2.2427 0.8720 36 1 3.5751 -2.8950 0.7776 37 1 2.6265 -2.4297 -0.6549 38 1 0.9070 -3.8955 -1.5369 39 1 0.1034 -6.2106 -1.7633 40 1 -0.3111 -11.6643 -0.8496 41 1 2.3749 -7.3265 1.6837 42 1 3.1792 -5.0105 1.8969 43 1 3.0536 1.1274 3.0950 44 1 1.6576 1.9470 5.0601 45 1 -0.6665 0.9360 5.1831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035017456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:41 Heat of formation + Delta-G solvation = 7.890581 kcal Electronic energy + Delta-G solvation = -25103.437819 eV Core-core repulsion = 21598.242418 eV Total energy + Delta-G solvation = -3505.195401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83066 -39.91459 -38.49463 -37.51897 -34.73860 -34.10619 -31.79364 -31.44870 -30.12664 -28.13319 -27.58639 -26.54334 -24.77936 -23.96322 -23.60195 -22.04124 -20.97419 -19.98091 -19.81194 -18.87622 -18.01075 -16.93115 -16.46749 -16.34616 -16.19566 -15.92522 -15.78376 -15.50955 -15.32087 -15.16676 -14.60945 -14.30013 -13.98623 -13.81081 -13.71964 -13.48549 -13.43323 -13.33209 -13.21814 -12.93069 -12.86416 -12.59239 -12.41008 -12.32859 -12.17092 -12.14687 -11.98237 -11.72481 -11.58363 -11.42998 -11.17094 -10.78769 -9.76838 -9.56024 -9.25674 -9.14825 -8.88938 -8.46764 -6.15082 0.22018 0.61755 0.68454 0.86661 1.28140 1.34579 1.45369 1.51006 1.95974 2.17935 2.79001 3.11279 3.44370 3.54418 3.78796 3.86014 4.02534 4.07373 4.12559 4.23124 4.26685 4.34174 4.45620 4.62117 4.63996 4.68487 4.74004 4.80953 4.81958 4.83292 4.85953 4.97022 5.05150 5.10624 5.15677 5.20717 5.31087 5.32325 5.36071 5.42640 5.53011 5.58303 5.68825 5.72328 5.82301 6.03296 6.08399 6.25658 6.38982 6.97799 7.79335 8.76422 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.002365 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.210491 B =11837.560765 C =12035.649465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.141 4.141 4 C 0.161 3.839 5 H 0.104 0.896 6 N -0.687 5.687 7 C 0.123 3.877 8 C -0.159 4.159 9 C -0.061 4.061 10 C -0.243 4.243 11 C 0.115 3.885 12 O -0.233 6.233 13 C -0.414 4.414 14 H 0.101 0.899 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.257 1.257 21 C -0.207 4.207 22 C -0.046 4.046 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.237 4.237 27 S 0.089 5.911 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.340 0.660 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.273 0.727 41 H 0.110 0.890 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 28.303 3.539 28.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.140 4.140 3 C -0.198 4.198 4 C 0.049 3.951 5 H 0.122 0.878 6 N -0.319 5.319 7 C -0.005 4.005 8 C -0.160 4.160 9 C -0.080 4.080 10 C -0.262 4.262 11 C 0.064 3.936 12 O -0.140 6.140 13 C -0.490 4.490 14 H 0.119 0.881 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.181 1.181 21 C -0.226 4.226 22 C -0.065 4.065 23 C -0.268 4.268 24 C -0.180 4.180 25 C -0.169 4.169 26 C -0.372 4.372 27 S 0.353 5.647 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.160 0.840 43 H 0.169 0.831 44 H 0.173 0.827 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.627 26.795 3.857 27.199 hybrid contribution 0.185 0.228 -0.735 0.792 sum 2.812 27.023 3.122 27.348 Atomic orbital electron populations 1.22094 0.95407 1.01568 1.02828 1.21740 0.96349 0.98044 0.97834 1.21771 1.01312 0.94630 1.02135 1.20136 0.99584 0.86089 0.89271 0.87823 1.60750 1.06753 1.08629 1.55737 1.20655 0.96165 0.88004 0.95658 1.19612 1.02715 0.96097 0.97592 1.20935 0.95303 0.94380 0.97342 1.21220 1.07399 0.94541 1.03056 1.19946 0.93190 0.85235 0.95185 1.83943 1.62518 1.24124 1.43417 1.21780 1.30322 0.95158 1.01730 0.88123 1.26598 0.99186 0.93839 1.02465 1.70182 1.45850 1.01459 1.38505 0.84656 0.77930 0.77940 0.75745 1.18125 1.19641 1.18144 1.20461 1.03237 0.98472 1.00474 1.20841 0.97586 0.90336 0.97726 1.24477 0.97316 1.03141 1.01904 1.20276 1.02188 1.00014 0.95569 1.20377 0.93774 1.02768 0.99947 1.25946 1.02530 1.04385 1.04377 1.84604 1.14393 1.44330 1.21418 0.91775 0.91668 0.93486 0.90329 0.91788 0.92349 0.92517 0.83997 0.89450 0.93091 0.84486 0.86452 0.91848 0.87215 0.83959 0.83066 0.82710 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.18 71.98 0.59 -2.04 16 2 C -0.12 -1.75 2.77 -10.79 -0.03 -1.78 16 3 C -0.14 -1.73 9.08 71.98 0.65 -1.07 16 4 C 0.16 2.71 2.24 44.17 0.10 2.81 16 5 H 0.10 1.58 7.90 -2.39 -0.02 1.56 16 6 N -0.69 -14.63 6.02 -499.47 -3.01 -17.64 16 7 C 0.12 2.66 5.63 85.56 0.48 3.14 16 8 C -0.16 -4.81 5.35 -19.83 -0.11 -4.92 16 9 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 10 C -0.24 -10.55 9.17 22.39 0.21 -10.35 16 11 C 0.11 5.79 6.65 22.58 0.15 5.94 16 12 O -0.23 -14.27 9.76 -22.75 -0.22 -14.49 16 13 C -0.41 -24.35 9.49 67.92 0.64 -23.71 16 14 H 0.10 5.41 5.21 -2.91 -0.02 5.40 16 15 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 16 N -0.92 -57.24 13.67 21.61 0.30 -56.95 16 17 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 C -0.21 -9.01 9.99 22.39 0.22 -8.78 16 22 C -0.05 -1.58 9.69 22.25 0.22 -1.37 16 23 C -0.15 -2.73 4.00 24.59 0.10 -2.63 16 24 C -0.15 -2.40 9.21 21.22 0.20 -2.21 16 25 C -0.14 -2.13 10.18 21.22 0.22 -1.91 16 26 C -0.24 -3.99 11.23 66.72 0.75 -3.24 16 27 S 0.09 1.76 20.56 -56.49 -1.16 0.59 16 28 H 0.06 1.10 5.42 -2.55 -0.01 1.09 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.85 6.48 -2.39 -0.02 0.84 16 31 H 0.08 1.15 7.00 -2.39 -0.02 1.13 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.75 6.61 -2.39 -0.02 0.74 16 35 H 0.34 7.80 6.59 -89.69 -0.59 7.21 16 36 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.05 0.95 6.91 -2.39 -0.02 0.94 16 38 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.12 5.19 5.64 -2.91 -0.02 5.18 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -70.14 375.84 3.41 -66.73 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.41 Total: 31.43 kcal Atomic # 6 Polarization: -59.88 SS G_CDS: 5.07 Total: -54.81 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.71 Total: -74.58 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.22 Total: -14.49 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.16 Total: 0.59 kcal Total: -70.14 3.41 -66.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035017456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.620 kcal (2) G-P(sol) polarization free energy of solvation -70.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds