Wall clock time and date at job start Tue Mar 31 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47419 * 2 1 4 4 C 1.53002 * 109.46770 * 120.00276 * 2 1 3 5 5 H 1.09002 * 109.47281 * 60.00171 * 4 2 1 6 6 N 1.46897 * 109.46721 * 179.97438 * 4 2 1 7 7 C 1.46904 * 111.00061 * 274.99929 * 6 4 2 8 8 C 1.50702 * 109.47122 * 180.02562 * 7 6 4 9 9 C 1.38295 * 119.93331 * 89.99791 * 8 7 6 10 10 C 1.38099 * 120.06865 * 180.29799 * 9 8 7 11 11 C 1.38882 * 119.93206 * 359.47410 * 10 9 8 12 12 O 1.35746 * 120.07145 * 180.25590 * 11 10 9 13 13 C 1.34834 * 117.00340 * 174.73672 * 12 11 10 14 14 H 1.08003 * 119.99155 * 5.05417 * 13 12 11 15 15 C 1.38652 * 120.00189 * 185.05311 * 13 12 11 16 16 N 1.31551 * 120.00092 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99812 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47232 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47355 * 120.00140 * 17 15 13 20 20 H 1.48507 * 109.46726 * 240.00180 * 17 15 13 21 21 C 1.38876 * 119.85943 * 0.52538 * 11 10 9 22 22 C 1.38100 * 119.93177 * 359.72571 * 21 11 10 23 23 C 1.50691 * 109.47078 * 299.99670 * 4 2 1 24 24 C 1.33388 * 125.20334 * 100.00335 * 23 4 2 25 25 C 1.38424 * 114.92224 * 179.97438 * 24 23 4 26 26 C 1.33383 * 114.92099 * 359.97438 * 25 24 23 27 27 S 1.75887 * 109.59513 * 359.75668 * 26 25 24 28 28 H 1.09000 * 109.46928 * 299.99933 * 1 2 3 29 29 H 1.09006 * 109.47007 * 59.99668 * 1 2 3 30 30 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46928 * 240.00067 * 2 1 3 32 32 H 1.08996 * 109.47101 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47066 * 300.00490 * 3 2 1 34 34 H 1.09000 * 109.47015 * 60.00120 * 3 2 1 35 35 H 1.00903 * 111.00341 * 38.95180 * 6 4 2 36 36 H 1.08992 * 109.47083 * 60.00315 * 7 6 4 37 37 H 1.08999 * 109.46944 * 299.99892 * 7 6 4 38 38 H 1.08000 * 119.96836 * 0.02607 * 9 8 7 39 39 H 1.08002 * 120.03655 * 179.72759 * 10 9 8 40 40 H 0.97006 * 120.00187 * 180.02562 * 16 15 13 41 41 H 1.07996 * 120.03796 * 179.70626 * 21 11 10 42 42 H 1.07997 * 119.96864 * 179.97438 * 22 21 11 43 43 H 1.07996 * 122.54117 * 0.02562 * 24 23 4 44 44 H 1.07996 * 122.54044 * 180.02562 * 25 24 23 45 45 H 1.08006 * 125.20720 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7490 1.2492 6 7 3.5089 -0.7219 1.2489 7 6 4.0348 -1.8456 0.4623 8 6 5.5413 -1.8135 0.4856 9 6 6.2306 -2.4863 1.4779 10 6 7.6110 -2.4537 1.5055 11 6 8.3072 -1.7534 0.5289 12 8 9.6642 -1.7239 0.5503 13 6 10.2798 -1.1191 -0.4857 14 1 9.6954 -0.6151 -1.2413 15 6 11.6628 -1.1443 -0.5810 16 7 12.3744 -1.7587 0.3392 17 14 12.5155 -0.3059 -2.0160 18 1 11.4979 0.3080 -2.9065 19 1 13.4261 0.7491 -1.5030 20 1 13.3006 -1.3088 -2.7798 21 6 7.6122 -1.0789 -0.4663 22 6 6.2317 -1.1110 -0.4854 23 6 1.5377 -0.0110 2.4796 24 6 0.4942 -0.3943 3.2168 25 6 0.2189 0.4165 4.3044 26 6 1.0393 1.4580 4.4508 27 16 2.2431 1.4456 3.1685 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.8708 0.1571 0.9104 36 1 3.6852 -1.7638 -0.5668 37 1 3.6851 -2.7845 0.8914 38 1 5.6888 -3.0341 2.2347 39 1 8.1486 -2.9757 2.2833 40 1 13.3421 -1.7760 0.2728 41 1 8.1506 -0.5295 -1.2243 42 1 5.6905 -0.5862 -1.2588 43 1 -0.0912 -1.2714 2.9832 44 1 -0.5976 0.2202 4.9834 45 1 0.9764 2.1943 5.2385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035017458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:46 Heat of formation + Delta-G solvation = 24.982872 kcal Electronic energy + Delta-G solvation = -25090.160601 eV Core-core repulsion = 21585.706377 eV Total energy + Delta-G solvation = -3504.454224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.37248 -38.83102 -37.19918 -36.39680 -33.60780 -32.24652 -30.44248 -30.13424 -29.03350 -27.42364 -26.01754 -25.19131 -23.68308 -23.22395 -21.94658 -20.56388 -20.19943 -19.20347 -17.98247 -17.33670 -16.83007 -16.10022 -15.44937 -15.19693 -14.77724 -14.70733 -14.53482 -14.32509 -13.70164 -13.55253 -13.44736 -13.02073 -12.83167 -12.77511 -12.68821 -12.54425 -12.52164 -12.32965 -12.09679 -11.88577 -11.66094 -11.33632 -11.26081 -11.10629 -10.94363 -10.78707 -10.67780 -10.60575 -10.56770 -10.41410 -9.32757 -8.85590 -8.73524 -8.44594 -8.32003 -8.15510 -7.17737 -6.45153 -4.03917 0.96109 1.61606 2.02366 2.23942 2.28769 2.67420 3.11752 3.13301 3.18852 3.96389 4.14678 4.51837 4.57221 4.68465 4.76488 4.94353 4.99274 5.10134 5.25632 5.28498 5.33788 5.37748 5.40081 5.44300 5.47683 5.51552 5.63327 5.67487 5.75314 5.80465 5.84511 5.91475 5.98646 6.04073 6.08199 6.22719 6.23994 6.38892 6.44223 6.71975 6.90124 6.99112 7.07343 7.27113 7.33065 7.43251 7.46392 7.84240 8.00093 9.00645 9.71295 10.73001 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002362 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.751720 B =11851.496381 C =12105.161085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.162 4.162 4 C 0.156 3.844 5 H 0.093 0.907 6 N -0.679 5.679 7 C 0.119 3.881 8 C -0.186 4.186 9 C -0.050 4.050 10 C -0.194 4.194 11 C 0.157 3.843 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.235 4.235 22 C -0.065 4.065 23 C -0.140 4.140 24 C -0.151 4.151 25 C -0.133 4.133 26 C -0.235 4.235 27 S 0.130 5.870 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.344 0.656 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.653 4.788 1.847 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.220 4.220 4 C 0.044 3.956 5 H 0.111 0.889 6 N -0.311 5.311 7 C -0.009 4.009 8 C -0.187 4.187 9 C -0.069 4.069 10 C -0.214 4.214 11 C 0.103 3.897 12 O -0.081 6.081 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.254 4.254 22 C -0.084 4.084 23 C -0.259 4.259 24 C -0.182 4.182 25 C -0.164 4.164 26 C -0.371 4.371 27 S 0.394 5.606 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.120 0.880 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.930 5.261 2.300 23.638 hybrid contribution -0.919 -0.126 -1.152 1.479 sum -23.849 5.135 1.148 24.422 Atomic orbital electron populations 1.21806 0.94580 1.01731 1.02041 1.21767 0.96970 0.97210 0.98361 1.22082 1.01211 0.95950 1.02732 1.20108 0.88681 0.98066 0.88760 0.88868 1.60773 1.04440 1.07396 1.58482 1.20645 0.91969 0.93640 0.94612 1.19079 0.93319 1.06601 0.99682 1.20462 0.92752 0.97333 0.96374 1.20227 0.93515 1.06040 1.01587 1.19404 0.84927 0.92317 0.93059 1.83981 1.12909 1.67976 1.43269 1.21369 0.89911 1.33183 1.02276 0.89052 1.25288 0.95430 0.97224 0.98606 1.70047 1.06663 1.40029 1.32995 0.85654 0.79368 0.78732 0.79701 1.19128 1.20132 1.20146 1.21109 0.94115 1.07293 1.02886 1.20577 0.93646 0.97211 0.96985 1.24449 0.99806 1.00138 1.01490 1.19993 0.99467 1.02331 0.96375 1.20062 1.01456 0.95584 0.99323 1.25702 1.01677 1.04673 1.05046 1.84451 1.31523 1.23985 1.20618 0.92089 0.92816 0.92750 0.90564 0.92385 0.92206 0.91412 0.83453 0.95195 0.91007 0.87057 0.86583 0.92069 0.85670 0.88012 0.84833 0.84875 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.88 37.16 0.33 -0.78 16 2 C -0.12 -1.08 2.82 -90.62 -0.26 -1.33 16 3 C -0.16 -1.46 8.36 37.16 0.31 -1.15 16 4 C 0.16 1.56 2.31 -68.87 -0.16 1.41 16 5 H 0.09 0.90 7.78 -51.93 -0.40 0.50 16 6 N -0.68 -8.29 5.99 -109.22 -0.65 -8.94 16 7 C 0.12 1.54 5.61 -4.97 -0.03 1.51 16 8 C -0.19 -3.09 5.40 -104.57 -0.56 -3.65 16 9 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 10 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 11 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 12 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 13 C -0.39 -10.95 9.49 30.89 0.29 -10.65 16 14 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 17 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.23 -5.07 9.17 -39.40 -0.36 -5.43 16 22 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 23 C -0.14 -1.45 3.95 -36.01 -0.14 -1.60 16 24 C -0.15 -1.45 9.26 -41.21 -0.38 -1.83 16 25 C -0.13 -1.22 10.18 -41.21 -0.42 -1.64 16 26 C -0.24 -2.23 11.23 29.04 0.33 -1.90 16 27 S 0.13 1.38 20.67 -107.50 -2.22 -0.84 16 28 H 0.06 0.50 6.69 -51.93 -0.35 0.15 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.68 7.45 -51.93 -0.39 0.30 16 32 H 0.06 0.56 6.26 -51.93 -0.32 0.24 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.63 5.45 -51.91 -0.28 0.35 16 35 H 0.34 4.32 6.27 -39.29 -0.25 4.08 16 36 H 0.03 0.36 7.38 -51.93 -0.38 -0.03 16 37 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 42 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -30.23 376.32 -10.34 -40.57 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.30 Total: 7.68 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -2.57 Total: -29.92 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.10 Total: -33.56 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: 0.00 Total: -5.11 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.22 Total: -0.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.23 -10.34 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035017458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.550 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds