Wall clock time and date at job start Tue Mar 31 2020 04:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47419 * 2 1 4 4 C 1.53002 * 109.46770 * 120.00276 * 2 1 3 5 5 H 1.09002 * 109.47281 * 60.00171 * 4 2 1 6 6 N 1.46897 * 109.46721 * 179.97438 * 4 2 1 7 7 C 1.46904 * 111.00061 * 274.99929 * 6 4 2 8 8 C 1.50702 * 109.47122 * 180.02562 * 7 6 4 9 9 C 1.38295 * 119.93331 * 89.99791 * 8 7 6 10 10 C 1.38099 * 120.06865 * 180.29799 * 9 8 7 11 11 C 1.38882 * 119.93206 * 359.47410 * 10 9 8 12 12 O 1.35746 * 120.07145 * 180.25590 * 11 10 9 13 13 C 1.34834 * 117.00340 * 174.73672 * 12 11 10 14 14 H 1.08003 * 119.99155 * 5.05417 * 13 12 11 15 15 C 1.38652 * 120.00189 * 185.05311 * 13 12 11 16 16 N 1.31551 * 120.00092 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99812 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47232 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47355 * 120.00140 * 17 15 13 20 20 H 1.48507 * 109.46726 * 240.00180 * 17 15 13 21 21 C 1.38876 * 119.85943 * 0.52538 * 11 10 9 22 22 C 1.38100 * 119.93177 * 359.72571 * 21 11 10 23 23 C 1.50691 * 109.47078 * 299.99670 * 4 2 1 24 24 C 1.33388 * 125.20334 * 100.00335 * 23 4 2 25 25 C 1.38424 * 114.92224 * 179.97438 * 24 23 4 26 26 C 1.33383 * 114.92099 * 359.97438 * 25 24 23 27 27 S 1.75887 * 109.59513 * 359.75668 * 26 25 24 28 28 H 1.09000 * 109.46928 * 299.99933 * 1 2 3 29 29 H 1.09006 * 109.47007 * 59.99668 * 1 2 3 30 30 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46928 * 240.00067 * 2 1 3 32 32 H 1.08996 * 109.47101 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47066 * 300.00490 * 3 2 1 34 34 H 1.09000 * 109.47015 * 60.00120 * 3 2 1 35 35 H 1.00903 * 111.00341 * 38.95180 * 6 4 2 36 36 H 1.08992 * 109.47083 * 60.00315 * 7 6 4 37 37 H 1.08999 * 109.46944 * 299.99892 * 7 6 4 38 38 H 1.08000 * 119.96836 * 0.02607 * 9 8 7 39 39 H 1.08002 * 120.03655 * 179.72759 * 10 9 8 40 40 H 0.97006 * 120.00187 * 180.02562 * 16 15 13 41 41 H 1.07996 * 120.03796 * 179.70626 * 21 11 10 42 42 H 1.07997 * 119.96864 * 179.97438 * 22 21 11 43 43 H 1.07996 * 122.54117 * 0.02562 * 24 23 4 44 44 H 1.07996 * 122.54044 * 180.02562 * 25 24 23 45 45 H 1.08006 * 125.20720 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7490 1.2492 6 7 3.5089 -0.7219 1.2489 7 6 4.0348 -1.8456 0.4623 8 6 5.5413 -1.8135 0.4856 9 6 6.2306 -2.4863 1.4779 10 6 7.6110 -2.4537 1.5055 11 6 8.3072 -1.7534 0.5289 12 8 9.6642 -1.7239 0.5503 13 6 10.2798 -1.1191 -0.4857 14 1 9.6954 -0.6151 -1.2413 15 6 11.6628 -1.1443 -0.5810 16 7 12.3744 -1.7587 0.3392 17 14 12.5155 -0.3059 -2.0160 18 1 11.4979 0.3080 -2.9065 19 1 13.4261 0.7491 -1.5030 20 1 13.3006 -1.3088 -2.7798 21 6 7.6122 -1.0789 -0.4663 22 6 6.2317 -1.1110 -0.4854 23 6 1.5377 -0.0110 2.4796 24 6 0.4942 -0.3943 3.2168 25 6 0.2189 0.4165 4.3044 26 6 1.0393 1.4580 4.4508 27 16 2.2431 1.4456 3.1685 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.8708 0.1571 0.9104 36 1 3.6852 -1.7638 -0.5668 37 1 3.6851 -2.7845 0.8914 38 1 5.6888 -3.0341 2.2347 39 1 8.1486 -2.9757 2.2833 40 1 13.3421 -1.7760 0.2728 41 1 8.1506 -0.5295 -1.2243 42 1 5.6905 -0.5862 -1.2588 43 1 -0.0912 -1.2714 2.9832 44 1 -0.5976 0.2202 4.9834 45 1 0.9764 2.1943 5.2385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035017458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:44 Heat of formation + Delta-G solvation = 8.428269 kcal Electronic energy + Delta-G solvation = -25090.878463 eV Core-core repulsion = 21585.706377 eV Total energy + Delta-G solvation = -3505.172085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.82291 -39.90840 -38.48718 -37.52272 -34.73882 -34.10514 -31.78783 -31.42310 -30.15747 -28.10999 -27.58375 -26.54698 -24.77704 -23.96468 -23.59678 -22.02333 -20.97379 -19.97157 -19.80856 -18.87808 -17.98885 -16.95219 -16.46296 -16.33795 -16.15505 -15.92144 -15.82716 -15.51332 -15.36715 -15.15383 -14.58793 -14.29871 -13.96331 -13.76274 -13.72771 -13.47666 -13.44050 -13.32031 -13.21068 -12.96505 -12.90131 -12.58606 -12.41197 -12.30305 -12.18188 -12.09266 -11.96566 -11.72019 -11.57893 -11.42030 -11.16256 -10.80281 -9.76220 -9.53397 -9.26685 -9.14597 -8.88843 -8.47053 -6.15123 0.23072 0.62222 0.69066 0.87967 1.29438 1.34730 1.43129 1.53143 1.96742 2.17578 2.79171 3.11298 3.44724 3.54562 3.80254 3.85939 4.02811 4.08383 4.12855 4.23891 4.26581 4.34703 4.46856 4.62711 4.63553 4.68498 4.74146 4.80871 4.81812 4.83727 4.85138 4.97441 5.05231 5.11046 5.16145 5.20872 5.31676 5.32664 5.36114 5.43545 5.53385 5.58872 5.69420 5.72744 5.82914 6.03683 6.09075 6.26325 6.40995 6.97870 7.79630 8.76642 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002362 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.751720 B =11851.496381 C =12105.161085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C -0.162 4.162 4 C 0.160 3.840 5 H 0.103 0.897 6 N -0.689 5.689 7 C 0.124 3.876 8 C -0.157 4.157 9 C -0.047 4.047 10 C -0.207 4.207 11 C 0.115 3.885 12 O -0.234 6.234 13 C -0.412 4.412 14 H 0.102 0.898 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.019 2.981 18 H -0.251 1.251 19 H -0.269 1.269 20 H -0.268 1.268 21 C -0.243 4.243 22 C -0.061 4.061 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.138 4.138 26 C -0.238 4.238 27 S 0.090 5.910 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.341 0.659 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.272 0.728 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.353 5.025 0.800 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.220 4.220 4 C 0.049 3.951 5 H 0.121 0.879 6 N -0.321 5.321 7 C -0.004 4.004 8 C -0.158 4.158 9 C -0.065 4.065 10 C -0.226 4.226 11 C 0.064 3.936 12 O -0.141 6.141 13 C -0.488 4.488 14 H 0.119 0.881 15 C -0.222 4.222 16 N -0.560 5.560 17 Si 0.838 3.162 18 H -0.174 1.174 19 H -0.194 1.194 20 H -0.193 1.193 21 C -0.262 4.262 22 C -0.080 4.080 23 C -0.266 4.266 24 C -0.182 4.182 25 C -0.169 4.169 26 C -0.374 4.374 27 S 0.353 5.647 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.169 0.831 44 H 0.172 0.828 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -26.706 5.497 1.259 27.295 hybrid contribution -0.193 -0.231 -0.699 0.761 sum -26.899 5.266 0.560 27.416 Atomic orbital electron populations 1.21763 0.93653 1.02341 1.01975 1.21721 0.97674 0.96642 0.97734 1.22077 1.00593 0.96453 1.02852 1.20132 0.87079 0.98731 0.89190 0.87895 1.60690 1.06121 1.06930 1.58379 1.20647 0.88688 0.94785 0.96316 1.19606 0.95820 1.03015 0.97342 1.20833 0.91300 0.97112 0.97278 1.20461 0.95117 1.06021 1.01050 1.19937 0.84071 0.94393 0.95170 1.83943 1.15146 1.70418 1.44576 1.21856 0.90709 1.33522 1.02701 0.88116 1.26598 0.95872 0.97918 1.01768 1.70194 1.07048 1.42941 1.35853 0.84526 0.78166 0.77653 0.75826 1.17418 1.19362 1.19333 1.21216 0.95809 1.07061 1.02119 1.20940 0.92124 0.96900 0.98019 1.24505 1.00267 0.99942 1.01934 1.20266 0.99183 1.02711 0.96039 1.20370 1.01807 0.95169 0.99506 1.25944 1.01159 1.05330 1.04955 1.84589 1.32907 1.25147 1.22011 0.92751 0.92311 0.91790 0.90206 0.93294 0.91527 0.91898 0.83752 0.93129 0.89453 0.84021 0.87250 0.91864 0.86508 0.84453 0.83120 0.82780 0.80917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.88 71.98 0.64 -1.06 16 2 C -0.12 -1.68 2.82 -10.79 -0.03 -1.71 16 3 C -0.16 -2.58 8.36 71.98 0.60 -1.98 16 4 C 0.16 2.67 2.31 44.17 0.10 2.78 16 5 H 0.10 1.55 7.78 -2.39 -0.02 1.53 16 6 N -0.69 -14.55 5.99 -499.47 -2.99 -17.54 16 7 C 0.12 2.66 5.61 85.56 0.48 3.13 16 8 C -0.16 -4.75 5.40 -19.83 -0.11 -4.85 16 9 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 10 C -0.21 -9.03 9.99 22.39 0.22 -8.81 16 11 C 0.11 5.79 6.65 22.58 0.15 5.94 16 12 O -0.23 -14.33 9.76 -22.74 -0.22 -14.55 16 13 C -0.41 -24.25 9.49 67.92 0.64 -23.61 16 14 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 15 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 16 N -0.92 -57.30 13.67 21.61 0.30 -57.00 16 17 Si 1.02 43.23 29.55 68.60 2.03 45.25 16 18 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 C -0.24 -10.57 9.17 22.39 0.21 -10.37 16 22 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 23 C -0.15 -2.69 3.95 24.59 0.10 -2.60 16 24 C -0.15 -2.45 9.26 21.22 0.20 -2.25 16 25 C -0.14 -2.16 10.18 21.21 0.22 -1.94 16 26 C -0.24 -4.06 11.23 66.72 0.75 -3.32 16 27 S 0.09 1.79 20.67 -56.49 -1.17 0.62 16 28 H 0.05 0.74 6.69 -2.39 -0.02 0.73 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 1.11 7.45 -2.39 -0.02 1.09 16 32 H 0.05 0.86 6.26 -2.39 -0.01 0.84 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.07 5.45 -2.40 -0.01 1.06 16 35 H 0.34 7.65 6.27 -89.69 -0.56 7.09 16 36 H 0.05 0.94 7.38 -2.39 -0.02 0.92 16 37 H 0.09 1.70 8.00 -2.39 -0.02 1.68 16 38 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 41 H 0.12 5.19 5.64 -2.91 -0.02 5.18 16 42 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -70.44 376.32 3.44 -66.99 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.44 Total: 31.02 kcal Atomic # 6 Polarization: -59.85 SS G_CDS: 5.06 Total: -54.79 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -2.70 Total: -74.54 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.22 Total: -14.55 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.17 Total: 0.62 kcal Total: -70.44 3.44 -66.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035017458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.421 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds