Wall clock time and date at job start Tue Mar 31 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34145 * 125.34841 * 2 1 4 4 C 1.47243 * 106.58972 * 180.02562 * 3 2 1 5 5 C 1.41411 * 127.03730 * 179.97438 * 4 3 2 6 6 C 1.38634 * 120.00129 * 47.62876 * 5 4 3 7 7 C 1.47432 * 121.46170 * 8.72387 * 6 5 4 8 8 O 1.21659 * 120.90438 * 0.02953 * 7 6 5 9 9 N 1.34898 * 118.19220 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.23689 * 180.29918 * 9 7 6 11 11 C 1.34035 * 121.52464 * 0.02562 * 9 7 6 12 12 O 1.21540 * 118.25357 * 179.97438 * 11 9 7 13 13 N 1.34033 * 123.48997 * 0.02562 * 11 9 7 14 14 C 1.46500 * 119.23829 * 179.97438 * 13 11 9 15 15 C 1.34897 * 121.52340 * 359.97438 * 13 11 9 16 16 O 1.21663 * 120.90330 * 179.97438 * 15 13 11 17 17 C 1.38710 * 105.92569 * 0.24645 * 4 3 2 18 18 C 1.50703 * 126.02782 * 179.76427 * 17 4 3 19 19 N 1.35544 * 107.94027 * 359.60662 * 17 4 3 20 20 C 1.37166 * 124.87334 * 180.12227 * 19 17 4 21 21 H 1.08006 * 119.99717 * 219.15250 * 20 19 17 22 22 C 1.39144 * 120.00369 * 39.15888 * 20 19 17 23 23 N 1.31203 * 119.99676 * 21.58575 * 22 20 19 24 24 Si 1.86797 * 119.99923 * 201.59306 * 22 20 19 25 25 H 1.48498 * 109.47168 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46926 * 119.99701 * 24 22 20 27 27 H 1.48500 * 109.46649 * 239.99431 * 24 22 20 28 28 H 1.08996 * 109.47525 * 86.02642 * 1 2 3 29 29 H 1.09007 * 109.46511 * 206.02147 * 1 2 3 30 30 H 1.08990 * 109.47192 * 326.02213 * 1 2 3 31 31 H 1.08001 * 126.70558 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99872 * 227.62965 * 5 4 3 33 33 H 1.08994 * 109.46970 * 179.72735 * 10 9 7 34 34 H 1.08997 * 109.47181 * 299.73446 * 10 9 7 35 35 H 1.09007 * 109.46941 * 59.72604 * 10 9 7 36 36 H 1.08998 * 109.47286 * 0.02562 * 14 13 11 37 37 H 1.08998 * 109.47158 * 120.00176 * 14 13 11 38 38 H 1.09003 * 109.47187 * 239.99789 * 14 13 11 39 39 H 1.08997 * 109.47301 * 90.02060 * 18 17 4 40 40 H 1.08993 * 109.46761 * 210.02175 * 18 17 4 41 41 H 1.09001 * 109.47001 * 330.01424 * 18 17 4 42 42 H 0.97000 * 119.99935 * 181.77419 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2831 1.0941 0.0000 4 6 3.6773 0.6206 -0.0006 5 6 4.8468 1.4156 -0.0014 6 6 4.9657 2.4746 0.8854 7 6 3.9855 2.6872 1.9659 8 8 3.0407 1.9343 2.1095 9 7 4.1653 3.7386 2.7917 10 6 3.2086 3.9676 3.8774 11 6 5.2020 4.5755 2.6452 12 8 5.3062 5.5039 3.4227 13 7 6.1292 4.4436 1.6864 14 6 7.2244 5.4138 1.6117 15 6 6.0774 3.4381 0.7886 16 8 6.9249 3.3294 -0.0774 17 6 3.6087 -0.7648 -0.0067 18 6 4.7822 -1.7103 -0.0146 19 7 2.3002 -1.1181 -0.0007 20 6 1.8363 -2.4089 -0.0016 21 1 0.9680 -2.6702 -0.5883 22 6 2.4843 -3.3816 0.7533 23 7 3.2398 -3.0301 1.7668 24 14 2.2787 -5.1879 0.3238 25 1 1.3819 -5.3180 -0.8526 26 1 3.6048 -5.7745 0.0033 27 1 1.6857 -5.9071 1.4798 28 1 -0.3634 0.0712 -1.0251 29 1 -0.3632 -0.9236 0.4509 30 1 -0.3633 0.8521 0.5743 31 1 1.9503 2.1216 -0.0004 32 1 5.6474 1.1977 -0.6928 33 1 3.5067 4.8496 4.4442 34 1 2.2144 4.1235 3.4587 35 1 3.1930 3.0999 4.5369 36 1 7.1115 6.1511 2.4066 37 1 8.1766 4.8966 1.7289 38 1 7.2001 5.9154 0.6443 39 1 5.0681 -1.9432 1.0111 40 1 4.5052 -2.6287 -0.5321 41 1 5.6220 -1.2428 -0.5287 42 1 3.7121 -3.7064 2.2772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042111198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:07 Heat of formation + Delta-G solvation = -16.683656 kcal Electronic energy + Delta-G solvation = -29170.006052 eV Core-core repulsion = 25117.451818 eV Total energy + Delta-G solvation = -4052.554235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93432 -40.14126 -38.97159 -38.52572 -35.04634 -34.91683 -34.09974 -33.22996 -31.20819 -30.17481 -28.42325 -28.02551 -26.55227 -25.79826 -24.41704 -23.30112 -22.53577 -21.57981 -19.61809 -19.07301 -18.52026 -17.06872 -16.98853 -16.48961 -16.39790 -15.46933 -15.36947 -14.93467 -14.89815 -14.59733 -14.44387 -13.80653 -13.73953 -13.40779 -13.21937 -12.81869 -12.81271 -12.51390 -12.40069 -12.32308 -12.22192 -12.19142 -11.78173 -11.62704 -11.38420 -11.29357 -11.03719 -10.94690 -10.69842 -10.68345 -10.59328 -10.25008 -9.71762 -9.54074 -9.34805 -9.14405 -8.96929 -7.38293 -6.91666 -6.65633 -4.67010 0.90377 2.24728 2.38283 2.63866 2.81929 2.94768 2.99240 3.28614 3.51515 3.72312 3.84026 4.09821 4.45894 4.55999 4.70399 5.22137 5.32858 5.39567 5.46677 5.56365 5.58205 5.67685 5.74325 5.80333 5.88723 5.99495 6.08964 6.17889 6.22632 6.27576 6.32536 6.43885 6.58305 6.60772 6.79741 6.83937 6.86787 7.10577 7.17386 7.31900 7.59634 7.65412 7.67135 7.98845 8.03512 8.25101 8.39047 8.79035 9.25676 10.05642 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.003727 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.619816 B = 7510.420523 C = 8022.217896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.036 4.036 3 C -0.109 4.109 4 C -0.277 4.277 5 C 0.210 3.790 6 C -0.371 4.371 7 C 0.555 3.445 8 O -0.454 6.454 9 N -0.568 5.568 10 C 0.083 3.917 11 C 0.713 3.287 12 O -0.557 6.557 13 N -0.568 5.568 14 C 0.081 3.919 15 C 0.572 3.428 16 O -0.515 6.515 17 C 0.112 3.888 18 C -0.069 4.069 19 N -0.229 5.229 20 C -0.365 4.365 21 H 0.108 0.892 22 C 0.059 3.941 23 N -0.811 5.811 24 Si 0.923 3.077 25 H -0.261 1.261 26 H -0.270 1.270 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 7.024 -0.329 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.143 4.143 3 C -0.132 4.132 4 C -0.283 4.283 5 C 0.188 3.812 6 C -0.379 4.379 7 C 0.349 3.651 8 O -0.324 6.324 9 N -0.314 5.314 10 C -0.058 4.058 11 C 0.416 3.584 12 O -0.433 6.433 13 N -0.313 5.313 14 C -0.060 4.060 15 C 0.368 3.632 16 O -0.391 6.391 17 C -0.017 4.017 18 C -0.126 4.126 19 N 0.113 4.887 20 C -0.492 4.492 21 H 0.126 0.874 22 C -0.155 4.155 23 N -0.440 5.440 24 Si 0.747 3.253 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.055 6.621 -0.098 6.933 hybrid contribution -0.016 -0.722 0.168 0.741 sum 2.040 5.899 0.070 6.242 Atomic orbital electron populations 1.20042 0.89822 1.02095 1.00516 1.20128 0.93116 0.86404 1.14668 1.21115 0.90291 0.95783 1.05978 1.17989 0.92405 0.91754 1.26128 1.21245 0.91890 0.84153 0.83903 1.21263 1.02093 1.08185 1.06322 1.18479 0.85877 0.79378 0.81376 1.91007 1.29274 1.41751 1.70399 1.46112 1.25546 1.27327 1.32431 1.21822 0.91540 1.03685 0.88803 1.15440 0.79483 0.82378 0.81053 1.90887 1.76208 1.32396 1.43810 1.45889 1.26444 1.29442 1.29477 1.21845 0.87813 0.92218 1.04121 1.18567 0.85208 0.79676 0.79708 1.90775 1.40548 1.73587 1.34223 1.20664 0.85975 0.91654 1.03432 1.20335 0.92590 0.97010 1.02645 1.39782 1.03413 1.04824 1.40709 1.19840 1.17075 0.82199 1.30117 0.87413 1.25572 0.95570 1.01530 0.92857 1.70007 1.25112 1.36436 1.12424 0.85937 0.79247 0.80770 0.79370 1.18495 1.19532 1.19979 0.93027 0.91777 0.92091 0.86481 0.85333 0.88576 0.90719 0.90682 0.88306 0.90720 0.90731 0.89877 0.92075 0.93073 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.07 36.00 0.36 -0.88 16 2 C -0.04 -0.81 6.80 -81.69 -0.56 -1.37 16 3 C -0.11 -2.37 7.91 -37.37 -0.30 -2.67 16 4 C -0.28 -5.95 4.77 -104.86 -0.50 -6.45 16 5 C 0.21 3.98 9.22 -38.23 -0.35 3.62 16 6 C -0.37 -6.94 6.03 -102.27 -0.62 -7.56 16 7 C 0.56 10.65 7.46 -12.46 -0.09 10.56 16 8 O -0.45 -9.95 12.37 5.23 0.06 -9.89 16 9 N -0.57 -9.55 2.94 -129.74 -0.38 -9.94 16 10 C 0.08 1.15 9.97 59.85 0.60 1.75 16 11 C 0.71 11.79 8.07 -88.24 -0.71 11.08 16 12 O -0.56 -9.49 14.45 5.33 0.08 -9.41 16 13 N -0.57 -8.99 2.94 -129.74 -0.38 -9.37 16 14 C 0.08 0.99 9.97 59.85 0.60 1.59 16 15 C 0.57 10.03 7.64 -12.46 -0.10 9.93 16 16 O -0.51 -9.59 16.58 5.22 0.09 -9.50 16 17 C 0.11 2.56 6.39 -80.78 -0.52 2.04 16 18 C -0.07 -1.40 8.33 36.01 0.30 -1.10 16 19 N -0.23 -5.48 2.74 -53.10 -0.15 -5.62 16 20 C -0.36 -8.63 8.83 -14.83 -0.13 -8.76 16 21 H 0.11 2.45 7.92 -52.48 -0.42 2.03 16 22 C 0.06 1.33 3.83 -17.48 -0.07 1.27 16 23 N -0.81 -19.52 10.62 55.50 0.59 -18.93 16 24 Si 0.92 17.32 29.60 -169.99 -5.03 12.29 16 25 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 26 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 27 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.21 7.65 -51.92 -0.40 0.81 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.12 2.39 7.83 -52.49 -0.41 1.98 16 32 H 0.13 2.17 7.79 -52.48 -0.41 1.76 16 33 H 0.10 1.22 6.72 -51.93 -0.35 0.87 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.13 6.72 -51.93 -0.35 0.78 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.80 6.89 -51.93 -0.36 1.44 16 40 H 0.06 1.25 6.96 -51.93 -0.36 0.89 16 41 H 0.05 0.88 7.96 -51.93 -0.41 0.47 16 42 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -28.85 352.48 -7.03 -35.88 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.13 Total: 6.11 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -2.08 Total: 13.06 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -0.32 Total: -43.85 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: 0.23 Total: -28.80 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.85 -7.03 -35.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042111198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.195 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds