Wall clock time and date at job start Tue Mar 31 2020 05:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38149 * 120.03130 * 2 1 4 4 C 1.38261 * 120.05448 * 180.25980 * 3 2 1 5 5 C 1.50707 * 119.94284 * 179.74516 * 4 3 2 6 6 N 1.46898 * 109.46770 * 270.02084 * 5 4 3 7 7 C 1.46902 * 111.00150 * 293.94960 * 6 5 4 8 8 C 1.46901 * 110.99621 * 169.99919 * 6 5 4 9 9 C 1.50698 * 109.47332 * 190.00095 * 8 6 5 10 10 H 1.08001 * 119.99944 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00237 * 180.02562 * 9 8 6 12 12 N 1.31513 * 119.99873 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00162 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46853 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47244 * 119.99671 * 13 11 9 16 16 H 1.48502 * 109.46998 * 240.00111 * 13 11 9 17 17 C 1.38265 * 120.11299 * 359.76745 * 4 3 2 18 18 C 1.38140 * 120.05723 * 359.97438 * 17 4 3 19 19 C 1.50703 * 120.02779 * 179.97438 * 18 17 4 20 20 C 1.38730 * 119.94395 * 0.02562 * 18 17 4 21 21 O 1.35905 * 120.05670 * 180.02562 * 20 18 17 22 22 C 1.42895 * 116.99993 * 89.99532 * 21 20 18 23 23 C 1.53006 * 109.47000 * 179.97438 * 22 21 20 24 24 F 1.39900 * 109.46764 * 60.00042 * 23 22 21 25 25 F 1.39897 * 109.47129 * 180.02562 * 23 22 21 26 26 F 1.39903 * 109.46814 * 300.00513 * 23 22 21 27 27 H 1.09001 * 109.46802 * 270.24977 * 1 2 3 28 28 H 1.08996 * 109.46999 * 30.24412 * 1 2 3 29 29 H 1.08996 * 109.47400 * 150.25177 * 1 2 3 30 30 H 1.07996 * 119.97127 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.46799 * 30.02494 * 5 4 3 32 32 H 1.09001 * 109.46665 * 150.01941 * 5 4 3 33 33 H 1.08997 * 109.46769 * 60.00708 * 7 6 5 34 34 H 1.08998 * 109.47012 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47146 * 300.00667 * 7 6 5 36 36 H 1.08998 * 109.47487 * 310.00571 * 8 6 5 37 37 H 1.09005 * 109.47475 * 69.99805 * 8 6 5 38 38 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 39 39 H 1.08005 * 119.97413 * 179.97438 * 17 4 3 40 40 H 1.08996 * 109.47389 * 270.02317 * 19 18 17 41 41 H 1.09003 * 109.47220 * 30.02899 * 19 18 17 42 42 H 1.09004 * 109.47049 * 150.02245 * 19 18 17 43 43 H 1.09001 * 109.46815 * 60.00312 * 22 21 20 44 44 H 1.09000 * 109.47411 * 299.99911 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1966 -0.0054 5 6 4.3327 2.5028 -0.0112 6 7 4.5710 2.9244 -1.3981 7 6 5.4801 1.9950 -2.0820 8 6 5.0870 4.2988 -1.4492 9 6 5.0871 4.7827 -2.8763 10 1 4.7391 4.1339 -3.6665 11 6 5.5325 6.0532 -3.1735 12 7 5.9568 6.8431 -2.2114 13 14 5.5320 6.6532 -4.9425 14 1 5.0100 5.5818 -5.8284 15 1 4.6682 7.8556 -5.0572 16 1 6.9181 6.9989 -5.3483 17 6 4.2752 0.0008 -0.0060 18 6 3.5885 -1.1978 -0.0006 19 6 4.3458 -2.5008 -0.0019 20 6 2.2012 -1.2012 0.0048 21 8 1.5234 -2.3791 0.0106 22 6 1.2049 -2.9380 1.2866 23 6 0.4470 -4.2529 1.0926 24 9 1.2463 -5.1505 0.3766 25 9 0.1347 -4.7998 2.3418 26 9 -0.7334 -4.0103 0.3819 27 1 -0.3633 0.0045 1.0277 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3634 -0.8922 -0.5099 30 1 1.6584 2.1313 0.0004 31 1 3.7447 3.2626 0.5037 32 1 5.2874 2.3748 0.4989 33 1 5.0409 0.9975 -2.0906 34 1 5.6397 2.3309 -3.1066 35 1 6.4345 1.9673 -1.5562 36 1 4.4526 4.9478 -0.8455 37 1 6.1043 4.3198 -1.0583 38 1 6.2698 7.7371 -2.4204 39 1 5.3552 0.0039 -0.0107 40 1 4.5239 -2.8166 -1.0297 41 1 5.3000 -2.3669 0.5077 42 1 3.7611 -3.2613 0.5158 43 1 0.5818 -2.2388 1.8442 44 1 2.1245 -3.1266 1.8405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054394261.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:06 Heat of formation + Delta-G solvation = -171.943538 kcal Electronic energy + Delta-G solvation = -28454.694498 eV Core-core repulsion = 23957.091293 eV Total energy + Delta-G solvation = -4497.603205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.46305 -48.02721 -47.90682 -40.51745 -38.16134 -36.20119 -33.68774 -32.82908 -31.64688 -30.27338 -27.77677 -27.19610 -26.62816 -26.16080 -23.97095 -23.53511 -21.12110 -21.02996 -19.95019 -19.03459 -18.97656 -18.21124 -17.63790 -16.77519 -16.38387 -15.12627 -15.06954 -14.98428 -14.79835 -14.50557 -14.46695 -14.37583 -14.25113 -14.08677 -14.08162 -13.92653 -13.77654 -13.46076 -13.27725 -13.11106 -12.96839 -12.57031 -12.14793 -12.07710 -11.96778 -11.75208 -11.50110 -11.35257 -11.14912 -10.94491 -10.86614 -10.62520 -10.45487 -10.26983 -9.88904 -9.24234 -8.57298 -8.50374 -8.40910 -7.29632 -6.05709 -4.06879 1.03471 1.34685 2.12050 2.95003 3.29478 3.37004 3.38924 3.42376 3.58135 3.68162 4.13298 4.41428 4.54776 4.58362 4.66955 4.74215 4.86955 5.15767 5.25256 5.30737 5.35206 5.36212 5.44670 5.49929 5.54729 5.64121 5.69614 5.86122 5.94561 6.05159 6.18786 6.18888 6.30641 6.39036 6.44528 6.65431 6.71982 6.77575 7.22131 7.23295 7.28913 7.76567 8.03054 8.14531 8.49701 9.01109 9.57550 11.05203 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.002255 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.461015 B =12412.352823 C =12658.287783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.095 4.095 4 C -0.044 4.044 5 C 0.087 3.913 6 N -0.533 5.533 7 C 0.034 3.966 8 C 0.192 3.808 9 C -0.506 4.506 10 H 0.064 0.936 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.110 4.110 18 C -0.091 4.091 19 C -0.109 4.109 20 C 0.066 3.934 21 O -0.311 6.311 22 C 0.016 3.984 23 C 0.463 3.537 24 F -0.175 7.175 25 F -0.177 7.177 26 F -0.174 7.174 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.010 0.990 36 H 0.030 0.970 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 -21.369 10.498 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.113 4.113 4 C -0.045 4.045 5 C -0.041 4.041 6 N -0.258 5.258 7 C -0.114 4.114 8 C 0.067 3.933 9 C -0.545 4.545 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.539 5.539 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.129 4.129 18 C -0.091 4.091 19 C -0.166 4.166 20 C 0.023 3.977 21 O -0.228 6.228 22 C -0.060 4.060 23 C 0.409 3.591 24 F -0.156 7.156 25 F -0.158 7.158 26 F -0.156 7.156 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.681 -21.314 10.114 25.501 hybrid contribution 0.815 0.401 -0.369 0.980 sum -8.866 -20.913 9.746 24.717 Atomic orbital electron populations 1.20737 0.90742 1.03594 1.02071 1.20130 0.96549 0.92168 1.00110 1.20874 0.93565 0.97124 0.99759 1.20075 0.93811 0.95191 0.95428 1.21087 0.97667 0.92808 0.92584 1.62156 1.47728 1.04885 1.11002 1.22291 0.93123 0.95546 1.00463 1.19769 0.93331 0.82170 0.97985 1.21188 1.41677 0.98818 0.92768 0.91769 1.24989 0.95440 0.96723 0.97503 1.69966 1.43687 1.08435 1.31790 0.86442 0.77541 0.78767 0.84696 1.19630 1.20980 1.21116 1.20869 0.99855 0.90812 1.01353 1.20069 0.92524 0.96069 1.00471 1.20699 0.99351 0.93679 1.02874 1.18078 0.89126 0.83417 1.07065 1.86047 1.75444 1.36649 1.24638 1.23735 1.01385 0.91903 0.89024 1.20132 0.78375 0.86651 0.73929 1.93225 1.73271 1.70564 1.78559 1.93214 1.93338 1.87182 1.42063 1.93227 1.49234 1.94307 1.78810 0.91552 0.90870 0.90953 0.85115 0.90284 0.94824 0.93298 0.90686 0.97124 0.95148 0.99049 0.92965 0.85691 0.90676 0.91423 0.91973 0.88338 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.79 36.00 0.35 -0.80 16 2 C -0.09 -1.10 5.89 -104.47 -0.62 -1.72 16 3 C -0.09 -1.31 9.35 -39.61 -0.37 -1.68 16 4 C -0.04 -0.66 4.88 -104.60 -0.51 -1.17 16 5 C 0.09 1.49 5.12 -4.97 -0.03 1.46 16 6 N -0.53 -11.27 4.74 -245.82 -1.17 -12.44 16 7 C 0.03 0.66 8.95 60.07 0.54 1.20 16 8 C 0.19 4.91 4.72 -4.98 -0.02 4.89 16 9 C -0.51 -14.07 8.46 -34.44 -0.29 -14.36 16 10 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 11 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 13 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.11 -1.46 7.61 -39.61 -0.30 -1.76 16 18 C -0.09 -1.10 5.89 -104.47 -0.62 -1.71 16 19 C -0.11 -1.05 9.79 36.01 0.35 -0.70 16 20 C 0.07 0.81 5.67 -39.22 -0.22 0.58 16 21 O -0.31 -3.44 8.21 -19.44 -0.16 -3.60 16 22 C 0.02 0.13 5.65 37.16 0.21 0.34 16 23 C 0.46 3.98 3.32 37.16 0.12 4.10 16 24 F -0.17 -1.72 17.26 2.25 0.04 -1.68 16 25 F -0.18 -1.44 17.32 2.25 0.04 -1.40 16 26 F -0.17 -1.73 17.26 2.25 0.04 -1.69 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 32 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 34 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 1.55 8.03 -52.48 -0.42 1.13 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.06 0.54 6.33 -51.93 -0.33 0.21 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.62 7.26 -51.93 -0.38 0.24 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -30.34 375.79 -7.64 -37.98 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.31 Total: -3.76 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.50 Total: -9.88 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.43 Total: -38.13 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.16 Total: -3.60 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.12 Total: -4.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.34 -7.64 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054394261.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.963 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds