Wall clock time and date at job start Tue Mar 31 2020 04:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35243 * 126.69074 * 2 1 4 4 C 1.42030 * 103.95390 * 180.10795 * 3 2 1 5 5 N 1.39474 * 126.89787 * 179.90885 * 4 3 2 6 6 C 1.34778 * 119.99766 * 359.70509 * 5 4 3 7 7 O 1.21582 * 120.00010 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99955 * 179.97438 * 6 5 4 9 9 C 1.39931 * 119.99820 * 185.31565 * 8 6 5 10 10 C 1.38931 * 120.04229 * 213.32150 * 9 8 6 11 11 C 1.38125 * 120.03588 * 179.97438 * 10 9 8 12 12 C 1.38212 * 120.13025 * 359.74885 * 11 10 9 13 13 C 1.38769 * 120.08095 * 0.50547 * 12 11 10 14 14 O 1.35893 * 120.02033 * 179.76729 * 13 12 11 15 15 C 1.42898 * 116.99960 * 359.72625 * 14 13 12 16 16 C 1.53002 * 109.47016 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46859 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00653 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00186 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00644 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99499 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47219 * 90.00034 * 21 19 17 23 23 H 1.48498 * 109.46830 * 210.00456 * 21 19 17 24 24 H 1.48500 * 109.47072 * 329.99882 * 21 19 17 25 25 C 1.38625 * 119.95836 * 359.49505 * 13 12 11 26 26 N 1.30728 * 106.20918 * 359.64252 * 4 3 2 27 27 O 1.20910 * 111.47307 * 0.22844 * 26 4 3 28 28 H 1.09001 * 109.46987 * 180.26673 * 1 2 3 29 29 H 1.08998 * 109.46970 * 300.26592 * 1 2 3 30 30 H 1.09000 * 109.46951 * 60.26669 * 1 2 3 31 31 H 1.07993 * 128.02779 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00186 * 179.71098 * 5 4 3 33 33 H 0.96997 * 120.00065 * 5.32687 * 8 6 5 34 34 H 1.07998 * 119.98024 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.93090 * 180.02562 * 11 10 9 36 36 H 1.07997 * 119.96234 * 180.27715 * 12 11 10 37 37 H 1.08997 * 109.47667 * 299.99991 * 15 14 13 38 38 H 1.09006 * 109.46980 * 60.00068 * 15 14 13 39 39 H 1.08996 * 109.47562 * 300.00003 * 16 15 14 40 40 H 1.08997 * 109.46554 * 60.00715 * 16 15 14 41 41 H 0.96992 * 120.00032 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.06493 * 180.23315 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6250 0.5355 -0.0026 5 7 4.8284 1.2406 -0.0054 6 6 4.8198 2.5883 -0.0118 7 8 3.7630 3.1895 -0.0148 8 7 5.9827 3.2697 -0.0140 9 6 5.9762 4.6650 0.0916 10 6 6.9465 5.4163 -0.5597 11 6 6.9396 6.7936 -0.4558 12 6 5.9653 7.4282 0.2914 13 6 4.9968 6.6825 0.9484 14 8 4.0422 7.3074 1.6866 15 6 4.0996 8.7340 1.7474 16 6 2.9530 9.2539 2.6167 17 6 3.0132 10.7584 2.6803 18 1 3.7911 11.2905 2.1531 19 6 2.0750 11.4556 3.4117 20 7 2.1278 12.7685 3.4676 21 14 0.7289 10.5352 4.3231 22 1 1.1935 10.2101 5.6955 23 1 -0.4866 11.3847 4.4000 24 1 0.4098 9.2792 3.5980 25 6 5.0003 5.3000 0.8465 26 7 3.4764 -0.7633 0.0040 27 8 2.3082 -1.0751 0.0055 28 1 -0.3633 -1.0277 0.0048 29 1 -0.3633 0.5179 0.8876 30 1 -0.3633 0.5097 -0.8924 31 1 2.0305 2.1262 0.0004 32 1 5.6716 0.7610 -0.0028 33 1 6.8240 2.7929 -0.0890 34 1 7.7060 4.9232 -1.1482 35 1 7.6945 7.3761 -0.9632 36 1 5.9599 8.5055 0.3671 37 1 5.0519 9.0413 2.1796 38 1 4.0077 9.1445 0.7417 39 1 2.0009 8.9467 2.1842 40 1 3.0446 8.8434 3.6223 41 1 1.4675 13.2589 3.9818 42 1 4.2452 4.7182 1.3540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056333662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:10 Heat of formation + Delta-G solvation = 31.484735 kcal Electronic energy + Delta-G solvation = -26676.656664 eV Core-core repulsion = 22626.191167 eV Total energy + Delta-G solvation = -4050.465496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.13946 -41.20387 -39.65080 -37.64779 -35.94797 -34.93167 -33.84987 -33.33348 -32.28454 -31.14195 -29.79236 -29.09005 -28.10566 -25.32104 -24.41590 -23.26699 -22.27347 -21.65763 -21.24192 -20.34559 -19.03138 -18.36623 -17.96467 -17.54327 -16.93185 -16.64081 -16.12616 -15.92438 -15.47885 -15.44555 -15.34814 -14.81995 -14.13803 -13.95667 -13.81307 -13.64549 -13.56401 -13.29686 -12.98666 -12.76337 -12.56921 -12.29940 -11.89037 -11.85868 -11.61763 -11.54031 -11.01415 -10.93349 -10.55554 -10.38626 -10.16354 -9.97622 -9.81505 -9.66403 -9.34605 -9.22906 -8.62478 -8.38246 -7.94318 -6.13641 -4.14531 1.09069 1.27299 1.53076 1.70045 1.89274 2.78646 2.83893 3.29068 3.31152 3.36425 3.42565 3.78240 3.86468 4.03759 4.39463 4.54021 4.75971 4.89594 4.93896 5.07798 5.08105 5.20652 5.21166 5.26120 5.30159 5.48430 5.54161 5.61408 5.72036 5.89617 5.91662 6.00045 6.08602 6.20865 6.37491 6.41331 6.47437 6.59743 6.82097 7.09098 7.22877 7.23533 7.62138 7.88071 7.89713 8.00516 8.38428 8.86937 9.46780 10.98817 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011245 B = 0.002528 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.478549 B =11072.249888 C =13358.337201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.022 4.022 3 C -0.224 4.224 4 C 0.267 3.733 5 N -0.640 5.640 6 C 0.712 3.288 7 O -0.538 6.538 8 N -0.672 5.672 9 C 0.191 3.809 10 C -0.192 4.192 11 C -0.059 4.059 12 C -0.222 4.222 13 C 0.165 3.835 14 O -0.316 6.316 15 C 0.072 3.928 16 C -0.009 4.009 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.162 4.162 26 N -0.395 5.395 27 O 0.094 5.906 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.416 0.584 33 H 0.410 0.590 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.466 -26.658 -9.535 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.247 4.247 4 C 0.017 3.983 5 N -0.294 5.294 6 C 0.411 3.589 7 O -0.410 6.410 8 N -0.320 5.320 9 C 0.097 3.903 10 C -0.213 4.213 11 C -0.078 4.078 12 C -0.241 4.241 13 C 0.117 3.883 14 O -0.229 6.229 15 C -0.002 4.002 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.183 4.183 26 N -0.112 5.112 27 O 0.034 5.966 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.210 0.790 32 H 0.252 0.748 33 H 0.246 0.754 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.040 -27.055 -9.323 29.247 hybrid contribution 0.174 0.151 0.363 0.430 sum 6.214 -26.904 -8.960 29.030 Atomic orbital electron populations 1.20373 0.83607 1.04612 1.04584 1.24445 0.96530 0.85682 1.01930 1.22764 0.89088 1.02452 1.10388 1.20128 0.87511 0.88692 1.01998 1.41326 1.06564 1.04943 1.76610 1.15582 0.84806 0.80355 0.78110 1.90980 1.29138 1.66898 1.54015 1.42333 1.07639 1.05654 1.76371 1.16984 0.96890 0.80105 0.96300 1.20594 1.02073 0.94021 1.04566 1.20677 0.97165 0.93382 0.96554 1.21437 0.97990 1.01042 1.03671 1.18877 0.87982 0.91529 0.89926 1.86141 1.47598 1.24115 1.65009 1.23114 1.01549 0.74532 1.01008 1.19590 0.93336 0.96828 0.94929 1.20835 1.14817 0.88490 1.32292 0.90724 1.24930 0.97468 0.94748 0.95849 1.69887 1.36149 1.06186 1.41366 0.86764 0.81603 0.80353 0.80608 1.20069 1.21172 1.18693 1.20255 1.02323 0.92161 1.03520 1.74019 0.97840 1.12784 1.26512 1.84790 1.10299 1.32391 1.69126 0.89845 0.88834 0.88911 0.78952 0.74823 0.75387 0.85917 0.85412 0.84780 0.92396 0.92357 0.95346 0.95834 0.92447 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.01 0.38 0.00 16 2 C -0.02 -0.20 7.48 -35.37 -0.26 -0.47 16 3 C -0.22 -2.52 9.79 -39.20 -0.38 -2.91 16 4 C 0.27 3.02 8.17 -154.84 -1.27 1.76 16 5 N -0.64 -5.85 5.43 -15.82 -0.09 -5.94 16 6 C 0.71 7.99 8.27 -86.92 -0.72 7.27 16 7 O -0.54 -8.06 11.30 5.29 0.06 -8.00 16 8 N -0.67 -6.10 5.35 -14.24 -0.08 -6.18 16 9 C 0.19 2.33 6.28 -83.71 -0.53 1.81 16 10 C -0.19 -2.04 9.96 -39.37 -0.39 -2.43 16 11 C -0.06 -0.69 10.03 -39.63 -0.40 -1.09 16 12 C -0.22 -3.26 9.04 -39.39 -0.36 -3.61 16 13 C 0.16 2.80 6.68 -39.24 -0.26 2.54 16 14 O -0.32 -6.30 10.13 -19.40 -0.20 -6.50 16 15 C 0.07 1.48 4.68 37.16 0.17 1.65 16 16 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 17 C -0.53 -14.80 9.66 -34.44 -0.33 -15.14 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 21 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 25 C -0.16 -2.52 8.59 -39.25 -0.34 -2.86 16 26 N -0.39 -4.52 12.10 31.19 0.38 -4.14 16 27 O 0.09 0.97 11.19 17.07 0.19 1.17 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.19 2.39 6.22 -52.49 -0.33 2.07 16 32 H 0.42 2.35 8.84 -40.82 -0.36 1.99 16 33 H 0.41 2.00 8.83 -40.82 -0.36 1.64 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.13 1.94 6.29 -52.49 -0.33 1.61 16 37 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.06 1.15 7.65 -51.93 -0.40 0.76 16 39 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 40 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.14 2.38 6.41 -52.49 -0.34 2.04 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -34.75 360.15 -8.08 -42.83 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.98 Total: 2.64 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -4.91 Total: -11.82 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.99 Total: -42.72 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.05 Total: -13.33 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.75 -8.08 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056333662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.316 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds