Wall clock time and date at job start Tue Mar 31 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39761 * 125.83782 * 2 1 4 4 C 1.36107 * 107.82880 * 180.13898 * 3 2 1 5 5 N 1.39471 * 126.21852 * 179.90591 * 4 3 2 6 6 C 1.34777 * 120.00021 * 359.68820 * 5 4 3 7 7 O 1.21289 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.38244 * 119.97486 * 269.72841 * 10 9 8 12 12 C 1.38202 * 120.02338 * 179.72838 * 11 10 9 13 13 C 1.38457 * 119.97200 * 0.56577 * 12 11 10 14 14 F 1.35099 * 120.02649 * 179.68648 * 13 12 11 15 15 C 1.38455 * 119.95159 * 359.70550 * 13 12 11 16 16 C 1.38200 * 119.97412 * 0.02562 * 15 13 12 17 17 N 1.35265 * 107.56819 * 359.64244 * 4 3 2 18 18 C 1.46497 * 126.04873 * 180.23003 * 17 4 3 19 19 C 1.50690 * 109.47380 * 89.99702 * 18 17 4 20 20 H 1.07998 * 120.00460 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99746 * 179.97438 * 19 18 17 22 22 N 1.31505 * 120.00141 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46983 * 60.00714 * 23 21 19 25 25 H 1.48501 * 109.46801 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47442 * 300.00379 * 23 21 19 27 27 N 1.30844 * 125.84104 * 179.73613 * 2 1 3 28 28 H 1.08999 * 109.47175 * 270.23738 * 1 2 3 29 29 H 1.08996 * 109.46933 * 30.23518 * 1 2 3 30 30 H 1.09000 * 109.46693 * 150.23729 * 1 2 3 31 31 H 1.07998 * 126.08508 * 0.03002 * 3 2 1 32 32 H 0.97003 * 120.00338 * 179.68907 * 5 4 3 33 33 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 34 34 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 35 35 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 36 36 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 37 37 H 1.07996 * 119.98449 * 359.97438 * 11 10 9 38 38 H 1.07995 * 120.01101 * 180.25281 * 12 11 10 39 39 H 1.08001 * 120.01453 * 179.97438 * 15 13 12 40 40 H 1.08008 * 119.98737 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.46465 * 209.99920 * 18 17 4 42 42 H 1.09002 * 109.46814 * 329.99301 * 18 17 4 43 43 H 0.97005 * 119.99899 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7122 -0.0031 5 7 4.7513 1.5275 -0.0061 6 6 4.6157 2.8684 -0.0123 7 8 3.5097 3.3662 -0.0148 8 6 5.8383 3.7494 -0.0160 9 6 5.4089 5.2179 -0.0222 10 6 6.6316 6.0989 -0.0253 11 6 7.1881 6.5122 1.1707 12 6 8.3127 7.3155 1.1691 13 6 8.8750 7.7159 -0.0311 14 9 9.9706 8.5063 -0.0340 15 6 8.3134 7.3059 -1.2284 16 6 7.1921 6.4981 -1.2243 17 7 3.6093 -0.6404 0.0030 18 6 4.7871 -1.5115 0.0071 19 6 5.1909 -1.8038 1.4292 20 1 4.6269 -1.3824 2.2482 21 6 6.2804 -2.6092 1.6848 22 7 6.9675 -3.1219 0.6876 23 14 6.7814 -2.9708 3.4477 24 1 5.6623 -3.6473 4.1514 25 1 7.9752 -3.8540 3.4518 26 1 7.1052 -1.6984 4.1414 27 7 2.2732 -1.0607 0.0049 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.9902 2.1597 0.0005 32 1 5.6359 1.1295 -0.0036 33 1 6.4338 3.5408 -0.9049 34 1 6.4333 3.5490 0.8750 35 1 4.8137 5.4262 0.8669 36 1 4.8137 5.4186 -0.9131 37 1 6.7462 6.2039 2.1067 38 1 8.7497 7.6349 2.1036 39 1 8.7509 7.6180 -2.1652 40 1 6.7536 6.1785 -2.1582 41 1 4.5499 -2.4454 -0.5025 42 1 5.6085 -1.0144 -0.5090 43 1 7.7343 -3.6882 0.8675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:17 Heat of formation + Delta-G solvation = 6.372952 kcal Electronic energy + Delta-G solvation = -26677.634202 eV Core-core repulsion = 22638.452567 eV Total energy + Delta-G solvation = -4039.181636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.15986 -40.88799 -39.71517 -39.00072 -34.78139 -34.10354 -33.76547 -32.08585 -31.45478 -30.03744 -29.07558 -28.03850 -26.06116 -24.92392 -23.37578 -22.89784 -21.82857 -20.86153 -19.71079 -19.23882 -17.95859 -17.04578 -16.80869 -16.75039 -16.46635 -15.86089 -15.62888 -15.53289 -14.98168 -14.50913 -14.38001 -14.22254 -13.92746 -13.89396 -13.70109 -13.07476 -13.01420 -12.82746 -12.75862 -12.51899 -12.06023 -12.00010 -11.81957 -11.69819 -11.58451 -11.49105 -11.12249 -11.09905 -10.89578 -10.40432 -10.35015 -9.93177 -9.85268 -9.51817 -9.43353 -8.84234 -8.74292 -7.93255 -7.45193 -6.35774 -4.44475 0.80398 0.90873 2.24420 2.80808 3.09795 3.16099 3.21123 3.25195 3.26926 3.59461 3.78431 3.96694 4.22106 4.38735 4.39130 4.57924 4.74469 4.83260 4.93768 4.97585 5.01526 5.09562 5.35424 5.37207 5.52073 5.64060 5.67708 5.69369 5.80783 5.90036 5.95115 6.02591 6.14996 6.18303 6.25408 6.26178 6.42036 6.57660 6.65601 6.81561 7.02341 7.50389 7.56617 7.61635 7.77466 7.89671 8.29197 8.60087 8.69222 9.23229 10.71302 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.002797 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.566301 B =10008.760965 C =12197.887066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.301 3.699 5 N -0.641 5.641 6 C 0.518 3.482 7 O -0.517 6.517 8 C -0.131 4.131 9 C -0.064 4.064 10 C -0.090 4.090 11 C -0.086 4.086 12 C -0.152 4.152 13 C 0.090 3.910 14 F -0.143 7.143 15 C -0.152 4.152 16 C -0.086 4.086 17 N -0.345 5.345 18 C 0.257 3.743 19 C -0.542 4.542 20 H 0.064 0.936 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.286 5.286 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.161 0.839 32 H 0.417 0.583 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 19.403 -2.877 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.078 3.922 5 N -0.288 5.288 6 C 0.305 3.695 7 O -0.391 6.391 8 C -0.172 4.172 9 C -0.102 4.102 10 C -0.090 4.090 11 C -0.104 4.104 12 C -0.170 4.170 13 C 0.071 3.929 14 F -0.121 7.121 15 C -0.171 4.171 16 C -0.104 4.104 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.111 5.111 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.079 18.337 -2.932 18.601 hybrid contribution 1.382 0.349 0.983 1.732 sum 2.461 18.685 -1.949 18.947 Atomic orbital electron populations 1.20016 0.87611 1.02307 1.02136 1.22038 0.96512 0.91088 1.01878 1.21264 0.89072 1.00409 1.22032 1.17968 0.88124 0.83357 1.02731 1.42861 1.08257 1.05752 1.71888 1.20634 0.91560 0.81304 0.75972 1.90637 1.26972 1.73737 1.47799 1.21636 0.95977 0.94042 1.05504 1.20346 0.93966 0.90754 1.05132 1.19994 0.97485 0.98547 0.92991 1.21004 0.94690 0.96256 0.98427 1.21167 0.97920 1.00816 0.97135 1.17756 0.85908 0.94383 0.94818 1.91497 1.51397 1.71782 1.97455 1.21159 0.98006 1.00770 0.97150 1.20987 0.94742 0.96364 0.98337 1.49356 1.06520 1.02236 1.54927 1.19607 0.77820 0.89770 0.98872 1.21301 1.13353 1.32017 0.91328 0.91778 1.24934 0.95679 0.94835 0.98197 1.69902 1.19139 1.32489 1.31218 0.86409 0.78111 0.78507 0.83652 1.19852 1.20878 1.19981 1.77352 0.86164 1.21837 1.25768 0.91335 0.91163 0.91572 0.82145 0.74674 0.88218 0.88084 0.89622 0.89646 0.84741 0.84749 0.84765 0.84781 0.92584 0.93835 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 2 C 0.05 0.99 7.21 -82.44 -0.59 0.40 16 3 C -0.30 -5.97 9.58 -39.78 -0.38 -6.35 16 4 C 0.30 6.22 7.66 -153.16 -1.17 5.05 16 5 N -0.64 -10.65 5.42 -11.46 -0.06 -10.71 16 6 C 0.52 7.39 7.79 -10.99 -0.09 7.30 16 7 O -0.52 -8.68 13.11 5.55 0.07 -8.61 16 8 C -0.13 -1.25 5.68 -27.89 -0.16 -1.40 16 9 C -0.06 -0.56 4.63 -27.88 -0.13 -0.69 16 10 C -0.09 -0.74 5.13 -104.62 -0.54 -1.27 16 11 C -0.09 -0.68 9.70 -39.59 -0.38 -1.07 16 12 C -0.15 -1.27 10.03 -39.51 -0.40 -1.66 16 13 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 14 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 15 C -0.15 -1.24 10.03 -39.52 -0.40 -1.64 16 16 C -0.09 -0.67 9.70 -39.59 -0.38 -1.05 16 17 N -0.34 -8.01 3.60 -61.58 -0.22 -8.23 16 18 C 0.26 6.35 6.01 -5.20 -0.03 6.32 16 19 C -0.54 -14.40 9.39 -34.44 -0.32 -14.72 16 20 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.09 13.29 55.43 0.74 -23.35 16 23 Si 0.91 20.47 29.54 -169.99 -5.02 15.44 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 N -0.29 -6.64 12.56 33.65 0.42 -6.21 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.16 3.13 5.83 -52.49 -0.31 2.82 16 32 H 0.42 6.38 7.97 -40.82 -0.33 6.05 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.79 8.04 -51.93 -0.42 0.37 16 36 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -31.68 376.43 -8.97 -40.65 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.63 Total: 5.88 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -4.98 Total: -9.11 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.88 Total: -48.51 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.68 -8.97 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.022 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds