Wall clock time and date at job start Tue Mar 31 2020 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47100 * 2 1 4 4 C 1.34216 * 119.36799 * 269.97512 * 3 2 1 5 5 O 1.21579 * 118.58504 * 0.02871 * 4 3 2 6 6 N 1.34391 * 122.82350 * 179.97438 * 4 3 2 7 7 H 0.97005 * 119.65689 * 180.02562 * 6 4 3 8 8 C 1.38799 * 120.68120 * 0.04914 * 6 4 3 9 9 C 1.38579 * 121.45587 * 179.97438 * 8 6 4 10 10 C 1.39282 * 119.64970 * 180.30341 * 9 8 6 11 11 C 1.48075 * 119.83805 * 179.70271 * 10 9 8 12 12 O 1.21525 * 120.00064 * 140.44483 * 11 10 9 13 13 N 1.34781 * 119.99639 * 320.43591 * 11 10 9 14 14 C 1.46502 * 120.00037 * 4.86939 * 13 11 10 15 15 C 1.46498 * 119.99722 * 184.86585 * 13 11 10 16 16 C 1.50694 * 109.47412 * 90.00132 * 15 13 11 17 17 H 1.08007 * 119.99658 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00509 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00643 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99558 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47320 * 89.99953 * 20 18 16 22 22 H 1.48497 * 109.46848 * 209.99251 * 20 18 16 23 23 H 1.48500 * 109.47282 * 329.99436 * 20 18 16 24 24 C 1.39795 * 120.32113 * 359.43659 * 10 9 8 25 25 C 1.37732 * 120.27260 * 0.56314 * 24 10 9 26 26 C 1.39308 * 119.72066 * 359.72259 * 25 24 10 27 27 C 1.35064 * 119.36759 * 90.00075 * 3 2 1 28 28 O 1.21565 * 120.85396 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.46817 * 299.99610 * 1 2 3 30 30 H 1.09000 * 109.47058 * 59.99998 * 1 2 3 31 31 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46883 * 239.99942 * 2 1 3 33 33 H 1.09000 * 109.47058 * 120.00002 * 2 1 3 34 34 H 1.07995 * 120.17462 * 0.02562 * 9 8 6 35 35 H 1.08997 * 109.47203 * 85.89529 * 14 13 11 36 36 H 1.08998 * 109.46577 * 205.89679 * 14 13 11 37 37 H 1.09001 * 109.47131 * 325.89223 * 14 13 11 38 38 H 1.09000 * 109.46895 * 210.00320 * 15 13 11 39 39 H 1.09001 * 109.46893 * 330.00183 * 15 13 11 40 40 H 0.96997 * 120.00532 * 180.02562 * 19 18 16 41 41 H 1.08004 * 119.86350 * 180.28756 * 24 10 9 42 42 H 1.08000 * 120.14106 * 179.69882 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2382 2.0016 -1.1697 5 8 2.0231 1.3934 -2.2002 6 7 2.6849 3.2665 -1.2507 7 1 2.8277 3.6703 -2.1211 8 6 2.9445 4.0008 -0.1018 9 6 3.4060 5.3059 -0.1667 10 6 3.6603 6.0061 1.0102 11 6 4.1597 7.3986 0.9458 12 8 3.7477 8.2289 1.7317 13 7 5.0715 7.7450 0.0156 14 6 5.4891 6.7736 -0.9983 15 6 5.6449 9.0931 0.0186 16 6 6.8842 9.1101 0.8757 17 1 7.2122 8.2068 1.3687 18 6 7.6000 10.2783 1.0298 19 7 8.6819 10.2930 1.7775 20 14 7.0331 11.8404 0.1766 21 1 6.1061 12.5829 1.0681 22 1 8.2105 12.6911 -0.1318 23 1 6.3321 11.4892 -1.0845 24 6 3.4410 5.4025 2.2519 25 6 2.9824 4.1057 2.3223 26 6 2.7315 3.3973 1.1493 27 6 2.2391 2.0056 1.1771 28 8 2.0383 1.4363 2.2322 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5718 5.7761 -1.1246 35 1 4.7950 6.8040 -1.8382 36 1 6.4920 7.0203 -1.3466 37 1 5.4909 5.7736 -0.5645 38 1 5.9041 9.3799 -1.0006 39 1 4.9159 9.7971 0.4199 40 1 9.1853 11.1150 1.8862 41 1 3.6362 5.9538 3.1599 42 1 2.8183 3.6398 3.2827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058268474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:17 Heat of formation + Delta-G solvation = -46.595834 kcal Electronic energy + Delta-G solvation = -28019.665686 eV Core-core repulsion = 23965.814362 eV Total energy + Delta-G solvation = -4053.851324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55746 -40.15325 -39.32379 -38.46064 -35.85291 -35.69577 -35.25050 -32.87213 -32.16304 -31.05407 -30.05403 -28.55300 -26.60904 -25.50676 -24.41141 -23.55021 -22.95409 -22.34058 -20.35016 -19.22987 -18.92939 -18.00011 -17.21005 -17.06417 -16.85834 -16.47593 -16.03475 -15.71049 -15.22594 -15.06165 -14.67917 -14.65595 -14.22476 -14.18299 -14.10605 -13.80305 -13.44463 -12.98427 -12.77923 -12.67021 -12.57800 -12.42614 -12.22688 -11.70541 -11.54518 -11.48668 -11.27444 -11.19302 -11.06485 -10.66315 -10.61858 -10.27227 -10.19855 -9.70372 -9.48098 -9.26817 -8.67995 -8.58217 -7.93462 -6.17622 -4.18152 0.15574 0.82694 1.68869 1.70484 2.44697 2.61092 3.12505 3.22721 3.28402 3.30604 3.43036 3.66585 3.83182 4.18966 4.31301 4.48255 4.67170 4.72720 4.78569 4.82315 4.84571 5.00361 5.09435 5.15241 5.28781 5.34434 5.39557 5.45102 5.48903 5.59355 5.74026 5.76913 5.94924 5.99703 6.07455 6.18137 6.37078 6.54339 6.79636 6.84219 7.06803 7.09108 7.48354 7.56794 7.95129 8.33902 8.63004 8.84961 9.41285 10.95384 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.002675 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.098810 B =10462.959166 C =10976.339791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.557 5.557 4 C 0.707 3.293 5 O -0.545 6.545 6 N -0.643 5.643 7 H 0.435 0.565 8 C 0.188 3.812 9 C -0.144 4.144 10 C -0.038 4.038 11 C 0.545 3.455 12 O -0.524 6.524 13 N -0.585 5.585 14 C 0.073 3.927 15 C 0.214 3.786 16 C -0.535 4.535 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.101 4.101 25 C -0.019 4.019 26 C -0.186 4.186 27 C 0.566 3.434 28 O -0.490 6.490 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.266 0.734 41 H 0.149 0.851 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.546 -17.911 -6.651 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.302 5.302 4 C 0.409 3.591 5 O -0.419 6.419 6 N -0.289 5.289 7 H 0.277 0.723 8 C 0.089 3.911 9 C -0.165 4.165 10 C -0.042 4.042 11 C 0.330 3.670 12 O -0.400 6.400 13 N -0.316 5.316 14 C -0.070 4.070 15 C 0.094 3.906 16 C -0.573 4.573 17 H 0.094 0.906 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.121 4.121 25 C -0.038 4.038 26 C -0.193 4.193 27 C 0.358 3.642 28 O -0.363 6.363 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.170 0.830 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.166 0.834 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.871 -18.138 -6.102 23.635 hybrid contribution 0.084 1.097 -0.821 1.373 sum -13.787 -17.041 -6.923 22.987 Atomic orbital electron populations 1.22085 0.94330 1.03265 1.02759 1.21763 0.95727 0.78826 1.05163 1.46240 1.61437 1.16737 1.05818 1.15541 0.78248 0.81273 0.84073 1.91045 1.55664 1.63179 1.32043 1.42719 1.64738 1.11863 1.09629 0.72315 1.17802 0.96109 0.91947 0.85276 1.21130 1.03427 0.91866 1.00066 1.20317 0.95904 0.94655 0.93360 1.18126 0.80414 0.86648 0.81774 1.90791 1.58066 1.50879 1.40311 1.47788 1.39916 1.15258 1.28606 1.22056 1.01301 0.92821 0.90861 1.19781 0.94703 0.78435 0.97687 1.21287 1.07774 0.98158 1.30119 0.90626 1.24852 0.94593 0.98651 0.94785 1.69886 1.16794 1.28051 1.38465 0.86852 0.78607 0.83713 0.80526 1.19794 1.20989 1.19031 1.21267 0.98656 0.94286 0.97859 1.20967 0.92712 0.92904 0.97264 1.19509 1.11939 0.94399 0.93425 1.18488 0.76446 0.86183 0.83080 1.90821 1.49058 1.67094 1.29312 0.92001 0.91935 0.90436 0.88138 0.88225 0.82962 0.93213 0.90016 0.91463 0.94776 0.94099 0.92408 0.83361 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.23 37.16 0.38 -0.86 16 2 C 0.11 0.89 5.76 -4.05 -0.02 0.86 16 3 N -0.56 -5.76 2.55 -122.03 -0.31 -6.07 16 4 C 0.71 7.43 8.33 -87.76 -0.73 6.70 16 5 O -0.55 -6.75 16.49 5.30 0.09 -6.66 16 6 N -0.64 -5.52 5.35 -14.39 -0.08 -5.60 16 7 H 0.44 2.65 8.79 -40.82 -0.36 2.29 16 8 C 0.19 1.86 6.66 -83.72 -0.56 1.30 16 9 C -0.14 -1.50 7.43 -39.07 -0.29 -1.79 16 10 C -0.04 -0.53 5.24 -104.89 -0.55 -1.07 16 11 C 0.54 10.16 7.35 -12.22 -0.09 10.07 16 12 O -0.52 -11.93 16.45 5.34 0.09 -11.84 16 13 N -0.58 -10.91 2.86 -183.99 -0.53 -11.44 16 14 C 0.07 0.97 8.88 59.85 0.53 1.50 16 15 C 0.21 4.87 4.25 -5.20 -0.02 4.85 16 16 C -0.54 -14.59 9.94 -34.44 -0.34 -14.93 16 17 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 20 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 24 C -0.10 -1.28 9.60 -39.18 -0.38 -1.65 16 25 C -0.02 -0.21 9.65 -39.37 -0.38 -0.59 16 26 C -0.19 -2.06 5.89 -104.80 -0.62 -2.68 16 27 C 0.57 6.51 7.65 -12.29 -0.09 6.41 16 28 O -0.49 -6.46 16.17 5.31 0.09 -6.37 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.79 7.30 -51.93 -0.38 0.41 16 33 H 0.10 0.78 7.41 -51.93 -0.38 0.40 16 34 H 0.15 1.27 5.32 -52.49 -0.28 0.99 16 35 H 0.05 0.49 6.91 -51.93 -0.36 0.13 16 36 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.07 0.77 5.80 -51.93 -0.30 0.47 16 38 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 39 H 0.04 1.00 6.79 -51.93 -0.35 0.64 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.15 1.90 8.04 -52.48 -0.42 1.48 16 42 H 0.15 1.43 7.79 -52.49 -0.41 1.02 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -34.83 354.49 -7.36 -42.19 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.89 Total: 0.28 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -3.26 Total: 10.10 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.14 Total: -49.00 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.26 Total: -24.87 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.83 -7.36 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058268474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.407 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds