Wall clock time and date at job start Tue Mar 31 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47198 * 2 1 4 4 C 1.35657 * 117.00369 * 180.02562 * 3 2 1 5 5 C 1.39080 * 119.88480 * 359.73076 * 4 3 2 6 6 C 1.37114 * 120.11956 * 179.72041 * 5 4 3 7 7 C 1.40044 * 119.88134 * 0.57001 * 6 5 4 8 8 C 1.46855 * 120.11616 * 179.67795 * 7 6 5 9 9 O 1.21291 * 120.00282 * 180.02562 * 8 7 6 10 10 C 1.50709 * 119.99843 * 0.02562 * 8 7 6 11 11 C 1.52996 * 109.46727 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47064 * 180.02562 * 11 10 8 13 13 O 1.21294 * 119.99525 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00383 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00028 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99838 * 224.29293 * 15 14 12 17 17 C 1.38951 * 120.00156 * 44.29121 * 15 14 12 18 18 N 1.31417 * 119.99340 * 18.20908 * 17 15 14 19 19 Si 1.86795 * 120.00012 * 198.20668 * 17 15 14 20 20 H 1.48498 * 109.46842 * 90.00358 * 19 17 15 21 21 H 1.48502 * 109.46913 * 210.00070 * 19 17 15 22 22 H 1.48493 * 109.47298 * 329.99975 * 19 17 15 23 23 C 1.46499 * 119.99594 * 0.02562 * 14 12 11 24 24 C 1.53008 * 117.49650 * 183.22029 * 23 14 12 25 25 C 1.53001 * 59.99939 * 252.50894 * 24 23 14 26 26 C 1.40041 * 119.77042 * 359.70694 * 7 6 5 27 27 C 1.37121 * 119.88164 * 359.97438 * 26 7 6 28 28 H 1.08996 * 109.47486 * 59.99630 * 1 2 3 29 29 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47172 * 299.99293 * 1 2 3 31 31 H 1.09004 * 109.46904 * 240.00227 * 2 1 3 32 32 H 1.08996 * 109.47486 * 120.00370 * 2 1 3 33 33 H 1.08007 * 119.93905 * 359.97438 * 5 4 3 34 34 H 1.08004 * 120.06171 * 180.27201 * 6 5 4 35 35 H 1.08996 * 109.46772 * 299.99566 * 10 8 7 36 36 H 1.08997 * 109.46779 * 59.99884 * 10 8 7 37 37 H 1.09003 * 109.47356 * 299.99557 * 11 10 8 38 38 H 1.08997 * 109.47625 * 60.00354 * 11 10 8 39 39 H 0.97003 * 119.99623 * 174.93735 * 18 17 15 40 40 H 1.08993 * 115.55460 * 328.92859 * 23 14 12 41 41 H 1.09006 * 117.49454 * 0.02562 * 24 23 14 42 42 H 1.08999 * 117.49778 * 145.02026 * 24 23 14 43 43 H 1.08998 * 117.49778 * 252.50405 * 25 24 23 44 44 H 1.09005 * 117.51320 * 107.47986 * 25 24 23 45 45 H 1.07998 * 120.05552 * 179.97438 * 26 7 6 46 46 H 1.08002 * 119.93670 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3512 1.5250 -0.0005 5 6 4.1962 0.4204 0.0046 6 6 5.5563 0.5945 -0.0017 7 6 6.0941 1.8876 -0.0013 8 6 7.5500 2.0800 -0.0009 9 8 8.0136 3.2008 0.0000 10 6 8.4681 0.8848 -0.0015 11 6 9.9226 1.3591 -0.0003 12 6 10.8407 0.1640 -0.0015 13 8 10.3771 -0.9568 -0.0037 14 7 12.1769 0.3406 -0.0013 15 6 13.0120 -0.7466 -0.0019 16 1 13.8718 -0.7675 0.6513 17 6 12.7522 -1.8218 -0.8429 18 7 11.9492 -1.6716 -1.8723 19 14 13.5444 -3.4804 -0.5104 20 1 12.6628 -4.2811 0.3765 21 1 13.7415 -4.2010 -1.7938 22 1 14.8588 -3.2777 0.1503 23 6 12.7367 1.6944 0.0008 24 6 14.2589 1.8294 -0.0752 25 6 13.5288 2.1294 1.2354 26 6 5.2388 2.9965 -0.0006 27 6 3.8802 2.8113 -0.0009 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7804 -0.5764 0.0094 34 1 6.2116 -0.2640 -0.0021 35 1 8.2817 0.2832 0.8881 36 1 8.2820 0.2843 -0.8919 37 1 10.1093 1.9611 -0.8896 38 1 10.1084 1.9594 0.8904 39 1 11.8251 -2.3998 -2.5010 40 1 12.1381 2.4515 -0.5055 41 1 14.8437 0.9110 -0.1273 42 1 14.6619 2.6755 -0.6319 43 1 13.4516 3.1728 1.5411 44 1 13.6330 1.4084 2.0463 45 1 5.6487 3.9957 0.0002 46 1 3.2197 3.6658 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:34 Heat of formation + Delta-G solvation = -51.749944 kcal Electronic energy + Delta-G solvation = -27420.094368 eV Core-core repulsion = 23469.559888 eV Total energy + Delta-G solvation = -3950.534480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57566 -39.39931 -38.42017 -37.24596 -36.05196 -33.06992 -32.53589 -31.97423 -31.18719 -30.79339 -29.97898 -26.27743 -24.64135 -23.94679 -23.07279 -21.77029 -21.58615 -21.03464 -19.69930 -18.81850 -18.61801 -16.99356 -16.49586 -16.25884 -16.03053 -15.75143 -15.30379 -14.91920 -14.70889 -14.25753 -14.19207 -13.85286 -13.81387 -13.68369 -13.56227 -13.30668 -13.02203 -12.62826 -12.54434 -12.28016 -12.05470 -12.03071 -11.85092 -11.22240 -11.06323 -11.04350 -10.94558 -10.85151 -10.79369 -10.73309 -10.35506 -10.13777 -9.91557 -9.67483 -9.45186 -9.30220 -8.67358 -8.43441 -7.96465 -6.98075 -6.08120 -3.83113 0.66166 1.18467 2.50102 2.80805 3.31770 3.38565 3.41095 3.69124 4.11423 4.20394 4.33950 4.44755 4.51009 4.59373 4.70144 4.83376 4.83472 4.93427 5.00467 5.14328 5.21173 5.29695 5.35345 5.36253 5.42786 5.60772 5.61967 5.65679 5.70935 5.80124 5.84344 5.86931 5.99941 6.07383 6.15794 6.26011 6.28920 6.35147 6.46526 6.52754 6.55735 6.57371 6.82429 6.98455 7.07007 7.65086 7.75040 8.31207 9.10805 9.19966 9.71064 10.34361 11.01172 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.002491 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.194939 B =11238.769232 C =12767.160555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.314 6.314 4 C 0.157 3.843 5 C -0.224 4.224 6 C -0.026 4.026 7 C -0.205 4.205 8 C 0.399 3.601 9 O -0.461 6.461 10 C -0.144 4.144 11 C -0.123 4.123 12 C 0.484 3.516 13 O -0.538 6.538 14 N -0.429 5.429 15 C -0.348 4.348 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.835 5.835 19 Si 0.912 3.088 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.076 3.924 24 C -0.175 4.175 25 C -0.208 4.208 26 C -0.023 4.023 27 C -0.169 4.169 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.263 0.737 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.140 0.860 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.806 6.147 3.042 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.111 3.889 5 C -0.242 4.242 6 C -0.044 4.044 7 C -0.206 4.206 8 C 0.278 3.722 9 O -0.337 6.337 10 C -0.181 4.181 11 C -0.163 4.163 12 C 0.272 3.728 13 O -0.417 6.417 14 N -0.150 5.150 15 C -0.475 4.475 16 H 0.094 0.906 17 C -0.137 4.137 18 N -0.468 5.468 19 Si 0.740 3.260 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.031 4.031 24 C -0.212 4.212 25 C -0.247 4.247 26 C -0.041 4.041 27 C -0.187 4.187 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.158 0.842 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.114 6.147 2.898 19.347 hybrid contribution 0.454 -1.072 -0.037 1.164 sum -17.660 5.076 2.861 18.597 Atomic orbital electron populations 1.21782 0.92589 1.03010 1.03549 1.22868 0.95995 0.81670 1.01875 1.86016 1.19131 1.29797 1.87786 1.19344 0.82227 0.94273 0.93086 1.21126 0.94316 0.98257 1.10521 1.21299 0.94629 0.96938 0.91549 1.20551 0.95593 0.93985 1.10452 1.22584 0.88345 0.90713 0.70563 1.90487 1.78908 1.27356 1.36992 1.21711 0.94235 0.96633 1.05555 1.21384 0.93201 0.98495 1.03241 1.19782 0.82673 0.89333 0.81049 1.90506 1.74678 1.25563 1.50913 1.42767 1.03951 1.02140 1.66117 1.18852 1.10433 0.94917 1.23252 0.90606 1.25233 0.95317 0.99448 0.93688 1.69837 1.34208 1.32366 1.10411 0.86216 0.78907 0.83279 0.77626 1.20373 1.21359 1.19958 1.21717 0.92817 0.88850 0.99683 1.23060 0.95647 1.02876 0.99662 1.23303 1.07613 1.00738 0.93023 1.21124 0.91767 0.99277 0.91969 1.20258 0.95184 0.94809 1.08498 0.91470 0.90216 0.91490 0.91630 0.91650 0.84901 0.84068 0.88051 0.87711 0.90324 0.90320 0.92706 0.87847 0.87552 0.89845 0.89790 0.89182 0.84224 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.40 16 2 C 0.05 0.35 5.45 37.16 0.20 0.56 16 3 O -0.31 -3.14 10.12 -18.67 -0.19 -3.33 16 4 C 0.16 1.72 6.70 -38.96 -0.26 1.46 16 5 C -0.22 -2.36 8.99 -39.68 -0.36 -2.72 16 6 C -0.03 -0.31 9.44 -39.31 -0.37 -0.68 16 7 C -0.20 -2.74 5.87 -105.06 -0.62 -3.36 16 8 C 0.40 6.24 7.11 -30.82 -0.22 6.02 16 9 O -0.46 -8.16 15.97 5.55 0.09 -8.07 16 10 C -0.14 -2.46 3.59 -27.88 -0.10 -2.56 16 11 C -0.12 -2.43 3.61 -27.88 -0.10 -2.53 16 12 C 0.48 12.18 6.97 -10.98 -0.08 12.10 16 13 O -0.54 -15.34 13.74 5.55 0.08 -15.26 16 14 N -0.43 -10.85 2.83 -107.72 -0.31 -11.16 16 15 C -0.35 -9.54 7.92 -14.93 -0.12 -9.65 16 16 H 0.08 2.03 7.26 -52.48 -0.38 1.65 16 17 C 0.07 2.06 4.39 -17.46 -0.08 1.99 16 18 N -0.83 -24.62 11.74 55.50 0.65 -23.97 16 19 Si 0.91 21.92 29.59 -169.99 -5.03 16.89 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 C 0.08 1.57 5.87 -67.92 -0.40 1.17 16 24 C -0.17 -3.26 9.80 -26.73 -0.26 -3.52 16 25 C -0.21 -3.69 10.36 -26.73 -0.28 -3.97 16 26 C -0.02 -0.28 9.57 -39.31 -0.38 -0.66 16 27 C -0.17 -1.84 9.95 -39.68 -0.39 -2.24 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.07 0.40 7.64 -51.93 -0.40 0.01 16 33 H 0.13 1.10 6.27 -52.48 -0.33 0.78 16 34 H 0.14 1.58 7.04 -52.48 -0.37 1.21 16 35 H 0.10 1.67 8.04 -51.93 -0.42 1.25 16 36 H 0.10 1.84 8.04 -51.93 -0.42 1.43 16 37 H 0.08 1.55 7.52 -51.93 -0.39 1.16 16 38 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 39 H 0.26 7.42 8.32 -40.82 -0.34 7.08 16 40 H 0.10 1.98 6.96 -51.93 -0.36 1.62 16 41 H 0.11 2.18 6.72 -51.93 -0.35 1.83 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 45 H 0.14 1.60 7.64 -52.49 -0.40 1.20 16 46 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -33.98 385.25 -9.05 -43.03 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.72 Total: 5.06 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.42 Total: -9.00 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.35 Total: -35.12 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.02 Total: -26.66 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.98 -9.05 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.720 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds