Wall clock time and date at job start Tue Mar 31 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48502 * 109.47632 * 270.00100 * 3 2 1 5 5 H 1.48492 * 109.47230 * 30.00613 * 3 2 1 6 6 H 1.48510 * 109.46741 * 150.00297 * 3 2 1 7 7 C 1.39029 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99534 * 161.38180 * 7 2 1 9 9 N 1.36897 * 119.99817 * 341.37271 * 7 2 1 10 10 C 1.34781 * 119.99384 * 128.76066 * 9 7 2 11 11 O 1.21619 * 119.99819 * 185.91333 * 10 9 7 12 12 C 1.47490 * 120.00422 * 5.92271 * 10 9 7 13 13 C 1.39799 * 120.09020 * 328.45708 * 12 10 9 14 14 C 1.37686 * 119.90195 * 179.69790 * 13 12 10 15 15 C 1.39013 * 120.09865 * 0.59808 * 14 13 12 16 16 O 1.35706 * 119.91037 * 179.69706 * 15 14 13 17 17 C 1.42906 * 117.00004 * 359.97438 * 16 15 14 18 18 C 1.52996 * 109.47230 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.82216 * 305.56364 * 18 17 16 20 20 C 1.54377 * 109.83128 * 184.58527 * 18 17 16 21 21 C 1.55313 * 102.25413 * 219.12862 * 20 18 17 22 22 C 1.54944 * 100.93749 * 34.13301 * 21 20 18 23 23 O 1.43247 * 109.83274 * 66.45011 * 18 17 16 24 24 C 1.39006 * 120.18290 * 359.67776 * 15 14 13 25 25 C 1.37691 * 120.09867 * 0.02562 * 24 15 14 26 26 C 1.46495 * 120.00396 * 308.76190 * 9 7 2 27 27 C 1.52998 * 117.49937 * 2.38119 * 26 9 7 28 28 C 1.52998 * 117.50032 * 293.71948 * 26 9 7 29 29 H 0.97007 * 119.99774 * 182.11487 * 1 2 3 30 30 H 1.08000 * 120.04833 * 359.97438 * 13 12 10 31 31 H 1.08007 * 119.95278 * 180.32347 * 14 13 12 32 32 H 1.09007 * 109.46850 * 299.99644 * 17 16 15 33 33 H 1.09000 * 109.47487 * 59.99491 * 17 16 15 34 34 H 1.09004 * 110.84879 * 337.31807 * 20 18 17 35 35 H 1.08994 * 110.84991 * 100.93983 * 20 18 17 36 36 H 1.08996 * 111.12261 * 276.21386 * 21 20 18 37 37 H 1.08998 * 111.15962 * 152.06321 * 21 20 18 38 38 H 1.09007 * 110.30506 * 204.64093 * 22 21 20 39 39 H 1.09001 * 110.39287 * 82.51911 * 22 21 20 40 40 H 1.08000 * 119.95590 * 180.02562 * 24 15 14 41 41 H 1.07997 * 120.05283 * 180.02562 * 25 24 15 42 42 H 1.09000 * 115.54818 * 148.05554 * 26 9 7 43 43 H 1.08998 * 117.49892 * 359.97438 * 27 26 9 44 44 H 1.09001 * 117.49871 * 145.01672 * 27 26 9 45 45 H 1.09002 * 117.50443 * 214.98243 * 28 26 9 46 46 H 1.09006 * 117.50032 * 0.02562 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4953 2.0466 -1.4000 5 1 1.4453 2.6526 0.7001 6 1 3.5454 1.4401 0.7000 7 6 2.0089 -1.2041 -0.0005 8 1 3.0466 -1.2283 -0.2992 9 7 1.3781 -2.3587 0.3776 10 6 1.4322 -3.4469 -0.4157 11 8 0.7848 -4.4373 -0.1344 12 6 2.2766 -3.4369 -1.6250 13 6 2.4842 -2.2447 -2.3249 14 6 3.2783 -2.2385 -3.4498 15 6 3.8630 -3.4178 -3.8968 16 8 4.6399 -3.4085 -5.0094 17 6 4.8123 -2.1530 -5.6698 18 6 5.7125 -2.3394 -6.8928 19 1 6.6489 -2.8106 -6.5941 20 6 5.9982 -0.9703 -7.5464 21 6 5.9427 -1.3100 -9.0609 22 6 4.8477 -2.4061 -9.0764 23 8 5.0477 -3.1534 -7.8661 24 6 3.6544 -4.6065 -3.2071 25 6 2.8668 -4.6205 -2.0778 26 6 0.6444 -2.4115 1.6445 27 6 0.5731 -1.1276 2.4736 28 6 1.4554 -2.2898 2.9362 29 1 -0.4850 -0.8396 0.0310 30 1 2.0262 -1.3290 -1.9813 31 1 3.4435 -1.3169 -3.9882 32 1 3.8412 -1.7732 -5.9875 33 1 5.2739 -1.4422 -4.9844 34 1 5.2273 -0.2461 -7.2828 35 1 6.9865 -0.6055 -7.2667 36 1 6.8973 -1.7033 -9.4105 37 1 5.6391 -0.4431 -9.6477 38 1 4.9720 -3.0527 -9.9451 39 1 3.8565 -1.9527 -9.0818 40 1 4.1108 -5.5205 -3.5574 41 1 2.7055 -5.5444 -1.5422 42 1 -0.2259 -3.0675 1.6567 43 1 1.0724 -0.2438 2.0766 44 1 -0.3442 -0.9391 3.0314 45 1 1.1183 -2.8654 3.7983 46 1 2.5349 -2.1700 2.8434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058291083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:52 Heat of formation + Delta-G solvation = -52.774750 kcal Electronic energy + Delta-G solvation = -28319.412769 eV Core-core repulsion = 24368.833851 eV Total energy + Delta-G solvation = -3950.578919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.20045 -39.53492 -38.77508 -36.87999 -35.91067 -33.41622 -32.54489 -31.49146 -31.13042 -30.36069 -29.10631 -26.06679 -24.89735 -23.16625 -22.41020 -22.05734 -21.48548 -21.14229 -20.49799 -19.51105 -18.01830 -17.52037 -17.24781 -16.46504 -16.24545 -15.64126 -15.40131 -15.15617 -14.52875 -14.43369 -14.07031 -13.82556 -13.77882 -13.56002 -13.53602 -13.18720 -12.81678 -12.41877 -12.17811 -12.10632 -12.06007 -11.95002 -11.67256 -11.56377 -11.45603 -11.21483 -11.21024 -10.64122 -10.49475 -10.38715 -10.35977 -10.03236 -9.85046 -9.73313 -9.48718 -8.94778 -8.47868 -8.45821 -7.71059 -7.53117 -6.70816 -4.25729 1.67523 1.96455 3.15229 3.19710 3.22530 3.37736 3.58715 3.72492 4.04797 4.09303 4.40393 4.44639 4.53204 4.58963 4.74759 4.79217 4.87151 4.97543 5.07913 5.16778 5.24011 5.31199 5.33895 5.39387 5.46101 5.48138 5.59624 5.76870 5.79426 5.83180 5.90133 5.94729 5.99932 6.04221 6.20382 6.37522 6.58422 6.59720 6.75562 6.80016 6.88903 7.00197 7.15927 7.20573 7.28511 7.71487 7.75303 7.92674 8.33253 8.90775 9.35847 9.73569 10.52743 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.003089 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.285256 B = 9061.362269 C =10419.515757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.018 3.982 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.433 4.433 8 H 0.080 0.920 9 N -0.424 5.424 10 C 0.530 3.470 11 O -0.597 6.597 12 C -0.138 4.138 13 C -0.026 4.026 14 C -0.233 4.233 15 C 0.134 3.866 16 O -0.309 6.309 17 C 0.050 3.950 18 C 0.084 3.916 19 H 0.091 0.909 20 C -0.149 4.149 21 C -0.155 4.155 22 C 0.045 3.955 23 O -0.368 6.368 24 C -0.174 4.174 25 C -0.040 4.040 26 C 0.081 3.919 27 C -0.162 4.162 28 C -0.204 4.204 29 H 0.283 0.717 30 H 0.173 0.827 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.061 1.919 -12.756 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.193 4.193 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.561 4.561 8 H 0.098 0.902 9 N -0.142 5.142 10 C 0.321 3.679 11 O -0.483 6.483 12 C -0.141 4.141 13 C -0.044 4.044 14 C -0.251 4.251 15 C 0.089 3.911 16 O -0.223 6.223 17 C -0.026 4.026 18 C 0.026 3.974 19 H 0.109 0.891 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.031 4.031 23 O -0.287 6.287 24 C -0.193 4.193 25 C -0.060 4.060 26 C -0.024 4.024 27 C -0.199 4.199 28 C -0.243 4.243 29 H 0.095 0.905 30 H 0.190 0.810 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.539 2.736 -12.686 16.718 hybrid contribution 0.228 -1.124 0.099 1.151 sum 10.767 1.612 -12.588 16.642 Atomic orbital electron populations 1.70635 1.06766 1.32304 1.39151 1.26431 0.96430 1.02310 0.94136 0.83522 0.75147 0.74358 0.77659 1.20752 1.20174 1.20594 1.20118 0.97323 0.86255 1.52373 0.90231 1.42767 1.46695 1.10704 1.14059 1.18332 0.82813 0.83838 0.82888 1.90621 1.47382 1.35380 1.74941 1.19825 1.02384 0.93870 0.98047 1.22418 0.91992 0.99954 0.90050 1.21257 1.05749 0.96798 1.01339 1.19222 0.91146 0.94543 0.86186 1.86006 1.65453 1.32653 1.38162 1.23220 1.00332 0.85637 0.93435 1.22783 0.95361 0.91391 0.87888 0.89131 1.23114 1.03722 0.96678 0.95140 1.23269 1.00191 0.99637 0.96180 1.23436 0.97975 0.93479 0.88253 1.88567 1.79338 1.37483 1.23297 1.20137 1.05160 0.96179 0.97775 1.20977 0.93328 0.97614 0.94039 1.21487 0.97245 1.00852 0.82831 1.23358 1.00625 0.94095 1.01838 1.23269 0.98815 1.03911 0.98337 0.90525 0.81036 0.86011 0.91545 0.90916 0.89867 0.89313 0.90174 0.89650 0.89625 0.92089 0.85647 0.85327 0.87517 0.86366 0.90095 0.90105 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.13 12.28 55.50 0.68 -21.45 16 2 C 0.02 0.43 2.70 -17.45 -0.05 0.38 16 3 Si 1.07 21.18 29.61 -169.99 -5.03 16.15 16 4 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.43 -10.49 5.26 -15.00 -0.08 -10.57 16 8 H 0.08 1.94 6.78 -52.48 -0.36 1.58 16 9 N -0.42 -10.57 2.41 -108.92 -0.26 -10.83 16 10 C 0.53 13.48 7.40 -12.49 -0.09 13.39 16 11 O -0.60 -16.38 16.51 5.26 0.09 -16.29 16 12 C -0.14 -3.10 5.60 -104.96 -0.59 -3.69 16 13 C -0.03 -0.55 7.92 -39.20 -0.31 -0.86 16 14 C -0.23 -4.18 9.01 -39.50 -0.36 -4.53 16 15 C 0.13 2.36 6.70 -39.01 -0.26 2.10 16 16 O -0.31 -4.94 10.11 -21.38 -0.22 -5.15 16 17 C 0.05 0.61 4.27 37.16 0.16 0.77 16 18 C 0.08 0.86 3.81 -26.01 -0.10 0.76 16 19 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.15 -1.05 6.54 -24.78 -0.16 -1.21 16 21 C -0.16 -0.97 7.16 -24.48 -0.18 -1.15 16 22 C 0.05 0.38 7.78 38.18 0.30 0.68 16 23 O -0.37 -4.53 11.00 -37.79 -0.42 -4.95 16 24 C -0.17 -3.09 9.97 -39.50 -0.39 -3.49 16 25 C -0.04 -0.80 9.59 -39.20 -0.38 -1.18 16 26 C 0.08 1.89 5.04 -67.94 -0.34 1.54 16 27 C -0.16 -3.46 8.37 -26.69 -0.22 -3.68 16 28 C -0.20 -4.15 10.37 -26.69 -0.28 -4.43 16 29 H 0.28 7.70 7.04 -40.82 -0.29 7.41 16 30 H 0.17 3.88 5.00 -52.49 -0.26 3.62 16 31 H 0.12 1.86 6.28 -52.48 -0.33 1.53 16 32 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 33 H 0.07 0.78 7.65 -51.93 -0.40 0.39 16 34 H 0.08 0.55 7.85 -51.93 -0.41 0.15 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.13 2.45 7.94 -52.49 -0.42 2.03 16 42 H 0.11 2.55 7.75 -51.93 -0.40 2.15 16 43 H 0.12 2.73 4.85 -51.93 -0.25 2.48 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -30.00 370.85 -9.43 -39.42 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.53 Total: 12.67 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.33 Total: -15.16 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.42 Total: -32.28 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.55 Total: -26.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.00 -9.43 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058291083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.350 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds