Wall clock time and date at job start Tue Mar 31 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48502 * 109.47632 * 270.00100 * 3 2 1 5 5 H 1.48492 * 109.47230 * 30.00613 * 3 2 1 6 6 H 1.48510 * 109.46741 * 150.00297 * 3 2 1 7 7 C 1.39029 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99534 * 161.38180 * 7 2 1 9 9 N 1.36897 * 119.99817 * 341.37271 * 7 2 1 10 10 C 1.34781 * 119.99384 * 128.76066 * 9 7 2 11 11 O 1.21619 * 119.99819 * 185.91333 * 10 9 7 12 12 C 1.47490 * 120.00422 * 5.92271 * 10 9 7 13 13 C 1.39799 * 120.09020 * 328.45708 * 12 10 9 14 14 C 1.37686 * 119.90195 * 179.69790 * 13 12 10 15 15 C 1.39013 * 120.09865 * 0.59808 * 14 13 12 16 16 O 1.35706 * 119.91037 * 179.69706 * 15 14 13 17 17 C 1.42906 * 117.00004 * 359.97438 * 16 15 14 18 18 C 1.52996 * 109.47230 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.82216 * 305.56364 * 18 17 16 20 20 C 1.54377 * 109.83128 * 184.58527 * 18 17 16 21 21 C 1.55313 * 102.25413 * 219.12862 * 20 18 17 22 22 C 1.54944 * 100.93749 * 34.13301 * 21 20 18 23 23 O 1.43247 * 109.83274 * 66.45011 * 18 17 16 24 24 C 1.39006 * 120.18290 * 359.67776 * 15 14 13 25 25 C 1.37691 * 120.09867 * 0.02562 * 24 15 14 26 26 C 1.46495 * 120.00396 * 308.76190 * 9 7 2 27 27 C 1.52998 * 117.49937 * 2.38119 * 26 9 7 28 28 C 1.52998 * 117.50032 * 293.71948 * 26 9 7 29 29 H 0.97007 * 119.99774 * 182.11487 * 1 2 3 30 30 H 1.08000 * 120.04833 * 359.97438 * 13 12 10 31 31 H 1.08007 * 119.95278 * 180.32347 * 14 13 12 32 32 H 1.09007 * 109.46850 * 299.99644 * 17 16 15 33 33 H 1.09000 * 109.47487 * 59.99491 * 17 16 15 34 34 H 1.09004 * 110.84879 * 337.31807 * 20 18 17 35 35 H 1.08994 * 110.84991 * 100.93983 * 20 18 17 36 36 H 1.08996 * 111.12261 * 276.21386 * 21 20 18 37 37 H 1.08998 * 111.15962 * 152.06321 * 21 20 18 38 38 H 1.09007 * 110.30506 * 204.64093 * 22 21 20 39 39 H 1.09001 * 110.39287 * 82.51911 * 22 21 20 40 40 H 1.08000 * 119.95590 * 180.02562 * 24 15 14 41 41 H 1.07997 * 120.05283 * 180.02562 * 25 24 15 42 42 H 1.09000 * 115.54818 * 148.05554 * 26 9 7 43 43 H 1.08998 * 117.49892 * 359.97438 * 27 26 9 44 44 H 1.09001 * 117.49871 * 145.01672 * 27 26 9 45 45 H 1.09002 * 117.50443 * 214.98243 * 28 26 9 46 46 H 1.09006 * 117.50032 * 0.02562 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4953 2.0466 -1.4000 5 1 1.4453 2.6526 0.7001 6 1 3.5454 1.4401 0.7000 7 6 2.0089 -1.2041 -0.0005 8 1 3.0466 -1.2283 -0.2992 9 7 1.3781 -2.3587 0.3776 10 6 1.4322 -3.4469 -0.4157 11 8 0.7848 -4.4373 -0.1344 12 6 2.2766 -3.4369 -1.6250 13 6 2.4842 -2.2447 -2.3249 14 6 3.2783 -2.2385 -3.4498 15 6 3.8630 -3.4178 -3.8968 16 8 4.6399 -3.4085 -5.0094 17 6 4.8123 -2.1530 -5.6698 18 6 5.7125 -2.3394 -6.8928 19 1 6.6489 -2.8106 -6.5941 20 6 5.9982 -0.9703 -7.5464 21 6 5.9427 -1.3100 -9.0609 22 6 4.8477 -2.4061 -9.0764 23 8 5.0477 -3.1534 -7.8661 24 6 3.6544 -4.6065 -3.2071 25 6 2.8668 -4.6205 -2.0778 26 6 0.6444 -2.4115 1.6445 27 6 0.5731 -1.1276 2.4736 28 6 1.4554 -2.2898 2.9362 29 1 -0.4850 -0.8396 0.0310 30 1 2.0262 -1.3290 -1.9813 31 1 3.4435 -1.3169 -3.9882 32 1 3.8412 -1.7732 -5.9875 33 1 5.2739 -1.4422 -4.9844 34 1 5.2273 -0.2461 -7.2828 35 1 6.9865 -0.6055 -7.2667 36 1 6.8973 -1.7033 -9.4105 37 1 5.6391 -0.4431 -9.6477 38 1 4.9720 -3.0527 -9.9451 39 1 3.8565 -1.9527 -9.0818 40 1 4.1108 -5.5205 -3.5574 41 1 2.7055 -5.5444 -1.5422 42 1 -0.2259 -3.0675 1.6567 43 1 1.0724 -0.2438 2.0766 44 1 -0.3442 -0.9391 3.0314 45 1 1.1183 -2.8654 3.7983 46 1 2.5349 -2.1700 2.8434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058291083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:51 Heat of formation + Delta-G solvation = -69.187615 kcal Electronic energy + Delta-G solvation = -28320.124484 eV Core-core repulsion = 24368.833851 eV Total energy + Delta-G solvation = -3951.290634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.52233 -40.85140 -40.06854 -38.47233 -37.64606 -35.22128 -33.31129 -33.18799 -32.22346 -31.79732 -30.51347 -26.97568 -26.79440 -24.72634 -23.74863 -23.16320 -22.77889 -22.34243 -21.80773 -21.34065 -19.60493 -18.91730 -18.17062 -18.09048 -17.27862 -17.03820 -16.62516 -16.45668 -16.30222 -15.77525 -15.50109 -15.35939 -15.24454 -14.89635 -14.59278 -14.40173 -14.25088 -13.93896 -13.77204 -13.52869 -13.26112 -13.24036 -12.84035 -12.68394 -12.33945 -12.23221 -12.09601 -11.93530 -11.88536 -11.87694 -11.81034 -11.69338 -11.56308 -11.26429 -10.84617 -10.53652 -10.34444 -9.98257 -9.52215 -9.14126 -8.63285 -6.19252 0.09894 0.44266 1.56760 1.63475 1.83963 1.95336 2.09329 2.36615 2.69863 2.86689 2.89155 2.96349 3.27866 3.51472 3.71038 3.88119 3.93848 3.95838 3.99896 4.09399 4.13347 4.16929 4.18844 4.27649 4.31526 4.38394 4.43268 4.49488 4.61997 4.67352 4.74956 4.80560 4.86482 4.89600 4.93717 5.02659 5.11026 5.13249 5.24151 5.26977 5.39099 5.43039 5.65606 5.71328 5.78309 5.98849 6.05952 6.36072 6.41384 7.01928 7.44552 7.82529 8.57009 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.003089 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.285256 B = 9061.362269 C =10419.515757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C -0.007 4.007 3 Si 1.110 2.890 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.432 4.432 8 H 0.078 0.922 9 N -0.430 5.430 10 C 0.512 3.488 11 O -0.634 6.634 12 C -0.171 4.171 13 C -0.035 4.035 14 C -0.225 4.225 15 C 0.146 3.854 16 O -0.315 6.315 17 C 0.039 3.961 18 C 0.080 3.920 19 H 0.091 0.909 20 C -0.144 4.144 21 C -0.147 4.147 22 C 0.034 3.966 23 O -0.402 6.402 24 C -0.169 4.169 25 C -0.043 4.043 26 C 0.045 3.955 27 C -0.152 4.152 28 C -0.177 4.177 29 H 0.263 0.737 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.151 0.849 41 H 0.129 0.871 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.462 3.527 -14.125 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.213 4.213 3 Si 0.929 3.071 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.096 0.904 9 N -0.148 5.148 10 C 0.305 3.695 11 O -0.523 6.523 12 C -0.174 4.174 13 C -0.053 4.053 14 C -0.243 4.243 15 C 0.100 3.900 16 O -0.228 6.228 17 C -0.036 4.036 18 C 0.023 3.977 19 H 0.109 0.891 20 C -0.181 4.181 21 C -0.184 4.184 22 C -0.042 4.042 23 O -0.322 6.322 24 C -0.188 4.188 25 C -0.062 4.062 26 C -0.060 4.060 27 C -0.189 4.189 28 C -0.215 4.215 29 H 0.073 0.927 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.169 0.831 41 H 0.147 0.853 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.129 0.871 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.960 4.352 -14.067 19.615 hybrid contribution -0.484 -1.688 0.399 1.801 sum 12.476 2.663 -13.668 18.696 Atomic orbital electron populations 1.70767 1.07739 1.30877 1.41607 1.27643 0.96125 1.04924 0.92587 0.83006 0.74522 0.70830 0.78709 1.18877 1.20484 1.19116 1.20206 0.97093 0.86226 1.52355 0.90428 1.42971 1.46367 1.10838 1.14576 1.18965 0.83070 0.83655 0.83833 1.90561 1.49053 1.36549 1.76110 1.19792 1.04050 0.95609 0.97989 1.22156 0.93126 0.98631 0.91409 1.21419 1.04387 0.98294 1.00214 1.19278 0.90290 0.94135 0.86303 1.86032 1.64499 1.35068 1.37234 1.23614 1.01140 0.84498 0.94379 1.22916 0.94550 0.93207 0.87060 0.89097 1.23149 1.04968 0.94782 0.95199 1.23268 0.99730 0.99476 0.95948 1.23651 0.98904 0.94291 0.87313 1.88528 1.79660 1.39249 1.24797 1.20370 1.04152 0.97515 0.96725 1.21015 0.93607 0.96790 0.94814 1.21594 0.98101 1.02530 0.83733 1.23289 1.01463 0.93040 1.01137 1.23307 0.98286 1.02726 0.97226 0.92693 0.83006 0.83163 0.91523 0.89007 0.89309 0.87396 0.89405 0.87747 0.88784 0.92141 0.83114 0.85309 0.89135 0.87823 0.88469 0.87069 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.21 12.28 21.68 0.27 -45.95 16 2 C -0.01 -0.34 2.70 84.95 0.23 -0.11 16 3 Si 1.11 41.63 29.61 68.60 2.03 43.67 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 7 C -0.43 -21.26 5.26 84.09 0.44 -20.82 16 8 H 0.08 3.82 6.78 -2.91 -0.02 3.80 16 9 N -0.43 -22.21 2.41 -616.75 -1.49 -23.70 16 10 C 0.51 27.27 7.40 86.68 0.64 27.91 16 11 O -0.63 -36.62 16.51 -4.09 -0.07 -36.69 16 12 C -0.17 -7.93 5.60 -20.08 -0.11 -8.04 16 13 C -0.03 -1.48 7.92 22.52 0.18 -1.30 16 14 C -0.22 -7.74 9.01 22.33 0.20 -7.54 16 15 C 0.15 4.88 6.70 22.64 0.15 5.04 16 16 O -0.31 -9.35 10.11 -87.82 -0.89 -10.24 16 17 C 0.04 0.85 4.27 71.98 0.31 1.15 16 18 C 0.08 1.47 3.81 31.06 0.12 1.59 16 19 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 20 C -0.14 -1.55 6.54 31.86 0.21 -1.34 16 21 C -0.15 -1.38 7.16 32.05 0.23 -1.15 16 22 C 0.03 0.51 7.78 72.65 0.56 1.08 16 23 O -0.40 -9.29 11.00 -146.53 -1.61 -10.90 16 24 C -0.17 -5.82 9.97 22.32 0.22 -5.59 16 25 C -0.04 -1.73 9.59 22.52 0.22 -1.52 16 26 C 0.05 2.17 5.04 44.99 0.23 2.39 16 27 C -0.15 -6.48 8.37 30.62 0.26 -6.23 16 28 C -0.18 -7.06 10.37 30.62 0.32 -6.74 16 29 H 0.26 14.88 7.04 -92.70 -0.65 14.22 16 30 H 0.15 7.02 5.00 -2.91 -0.01 7.00 16 31 H 0.15 4.21 6.28 -2.91 -0.02 4.19 16 32 H 0.07 1.47 7.65 -2.38 -0.02 1.45 16 33 H 0.09 1.67 7.65 -2.39 -0.02 1.65 16 34 H 0.09 0.87 7.85 -2.38 -0.02 0.86 16 35 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.13 5.05 7.94 -2.91 -0.02 5.03 16 42 H 0.09 4.56 7.75 -2.39 -0.02 4.54 16 43 H 0.10 4.78 4.85 -2.39 -0.01 4.76 16 44 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 45 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 46 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 Total: -1.00 -67.26 370.85 3.75 -63.50 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: 1.11 Total: 41.52 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 4.40 Total: -21.22 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -1.22 Total: -69.64 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -2.57 Total: -57.83 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.67 kcal Total: -67.26 3.75 -63.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058291083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.684 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds