Wall clock time and date at job start Tue Mar 31 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86804 * 119.99713 * 2 1 4 4 H 1.48504 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46936 * 300.00177 * 3 2 1 6 6 H 1.48494 * 109.47324 * 59.99888 * 3 2 1 7 7 C 1.39021 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00041 * 173.38316 * 7 2 1 9 9 N 1.36903 * 119.99623 * 353.38849 * 7 2 1 10 10 C 1.34778 * 119.99966 * 152.97934 * 9 7 2 11 11 O 1.21619 * 119.99857 * 6.05447 * 10 9 7 12 12 C 1.47495 * 120.00240 * 186.05657 * 10 9 7 13 13 C 1.39806 * 120.09179 * 31.74868 * 12 10 9 14 14 C 1.37686 * 119.89865 * 180.27989 * 13 12 10 15 15 C 1.39003 * 120.09875 * 359.45158 * 14 13 12 16 16 O 1.35717 * 119.90447 * 180.28036 * 15 14 13 17 17 C 1.42903 * 116.99553 * 179.97438 * 16 15 14 18 18 C 1.53007 * 109.46697 * 179.97438 * 17 16 15 19 19 H 1.08992 * 110.27341 * 54.30162 * 18 17 16 20 20 C 1.54943 * 110.30626 * 176.39254 * 18 17 16 21 21 C 1.55408 * 100.89397 * 155.28855 * 20 18 17 22 22 C 1.54383 * 102.30746 * 325.98824 * 21 20 18 23 23 O 1.43237 * 107.58937 * 21.28423 * 22 21 20 24 24 C 1.39013 * 120.18806 * 0.29922 * 15 14 13 25 25 C 1.37686 * 120.09421 * 359.97438 * 24 15 14 26 26 C 1.46499 * 120.00140 * 332.96769 * 9 7 2 27 27 C 1.52996 * 117.50319 * 311.70974 * 26 9 7 28 28 C 1.52996 * 117.50427 * 243.04297 * 26 9 7 29 29 H 0.96996 * 120.00610 * 5.01508 * 1 2 3 30 30 H 1.07994 * 120.04748 * 0.02909 * 13 12 10 31 31 H 1.08004 * 119.94642 * 179.73035 * 14 13 12 32 32 H 1.08993 * 109.47504 * 299.99333 * 17 16 15 33 33 H 1.09000 * 109.46991 * 60.00210 * 17 16 15 34 34 H 1.09007 * 111.12616 * 273.27802 * 20 18 17 35 35 H 1.08993 * 111.13207 * 37.43708 * 20 18 17 36 36 H 1.09001 * 110.88786 * 207.74940 * 21 20 18 37 37 H 1.09003 * 110.93752 * 84.24924 * 21 20 18 38 38 H 1.08996 * 109.83006 * 261.76857 * 22 21 20 39 39 H 1.09002 * 109.83139 * 140.79934 * 22 21 20 40 40 H 1.07994 * 119.94972 * 179.97438 * 24 15 14 41 41 H 1.08000 * 120.04678 * 179.97438 * 25 24 15 42 42 H 1.09009 * 115.54392 * 97.37389 * 26 9 7 43 43 H 1.08999 * 117.49458 * 359.97438 * 27 26 9 44 44 H 1.08997 * 117.49981 * 145.02012 * 27 26 9 45 45 H 1.08997 * 117.50076 * 214.98151 * 28 26 9 46 46 H 1.09004 * 117.49566 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7078 1.3465 -0.0006 5 1 1.8889 2.3965 -1.2125 6 1 1.8890 2.3965 1.2124 7 6 2.0090 -1.2039 0.0005 8 1 3.0835 -1.2070 -0.1072 9 7 1.3313 -2.3855 0.1376 10 6 1.8423 -3.5196 -0.3813 11 8 2.9543 -3.5158 -0.8739 12 6 1.0531 -4.7652 -0.3519 13 6 -0.3416 -4.7136 -0.4350 14 6 -1.0747 -5.8785 -0.4013 15 6 -0.4297 -7.1053 -0.2963 16 8 -1.1560 -8.2515 -0.2692 17 6 -0.4296 -9.4773 -0.1605 18 6 -1.4104 -10.6516 -0.1446 19 1 -2.0657 -10.6081 -1.0145 20 6 -0.6398 -11.9955 -0.1185 21 6 -1.6991 -12.9289 0.5310 22 6 -2.4179 -11.9782 1.5123 23 8 -2.1853 -10.6376 1.0648 24 6 0.9571 -7.1616 -0.2187 25 6 1.6977 -6.0012 -0.2460 26 6 0.0507 -2.4174 0.8485 27 6 -0.0191 -1.7228 2.2099 28 6 -0.0261 -3.2514 2.1288 29 1 -0.4851 0.8367 -0.0734 30 1 -0.8432 -3.7611 -0.5214 31 1 -2.1524 -5.8392 -0.4611 32 1 0.2437 -9.5774 -1.0118 33 1 0.1497 -9.4757 0.7628 34 1 -0.3897 -12.3247 -1.1272 35 1 0.2534 -11.9244 0.5021 36 1 -1.2191 -13.7483 1.0661 37 1 -2.3931 -13.3108 -0.2177 38 1 -2.0137 -12.1084 2.5161 39 1 -3.4876 -12.1874 1.5131 40 1 1.4542 -8.1168 -0.1368 41 1 2.7751 -6.0457 -0.1852 42 1 -0.8379 -2.3798 0.2182 43 1 0.8880 -1.2425 2.5768 44 1 -0.9536 -1.2287 2.4755 45 1 -0.9653 -3.7622 2.3411 46 1 0.8761 -3.7768 2.4420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058291085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:55 Heat of formation + Delta-G solvation = -45.085729 kcal Electronic energy + Delta-G solvation = -28128.880812 eV Core-core repulsion = 24178.635314 eV Total energy + Delta-G solvation = -3950.245498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.26741 -39.58380 -38.71509 -36.62878 -35.95896 -32.98734 -32.61192 -31.49536 -31.25675 -30.48855 -29.37146 -26.13930 -25.16907 -22.90624 -22.56821 -22.07773 -21.49981 -21.42006 -20.84513 -19.22549 -18.01036 -17.38786 -16.91103 -16.59013 -16.16116 -15.70490 -15.41102 -15.12404 -14.77987 -14.63758 -14.13256 -14.02605 -13.76360 -13.58514 -13.26022 -13.09805 -12.96344 -12.34952 -12.28217 -12.25441 -12.16395 -11.86379 -11.65049 -11.60158 -11.27350 -11.15214 -11.05159 -10.75659 -10.64310 -10.55321 -10.40864 -10.26719 -9.81976 -9.75257 -9.37281 -8.81620 -8.60128 -8.40180 -7.78498 -7.64159 -6.30772 -3.87937 1.57663 1.76751 3.11096 3.16555 3.26152 3.32590 3.42552 3.75683 4.01469 4.12081 4.38764 4.45037 4.47260 4.72460 4.76118 4.78979 4.84071 4.86171 5.05363 5.09893 5.15935 5.18932 5.24146 5.24886 5.34322 5.43227 5.51607 5.58370 5.67680 5.75251 5.78136 5.88845 5.95924 6.15696 6.22374 6.39884 6.41436 6.57989 6.68152 6.69337 6.82106 6.98188 7.01171 7.08038 7.20463 7.57602 7.61515 8.16144 8.50734 9.18281 9.40687 9.99043 10.74291 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.030361 B = 0.002392 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.026408 B =11704.066595 C =12195.861513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.039 3.961 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.307 4.307 8 H 0.098 0.902 9 N -0.413 5.413 10 C 0.493 3.507 11 O -0.587 6.587 12 C -0.128 4.128 13 C -0.053 4.053 14 C -0.159 4.159 15 C 0.129 3.871 16 O -0.308 6.308 17 C 0.061 3.939 18 C 0.083 3.917 19 H 0.082 0.918 20 C -0.149 4.149 21 C -0.155 4.155 22 C 0.047 3.953 23 O -0.369 6.369 24 C -0.221 4.221 25 C -0.041 4.041 26 C 0.130 3.870 27 C -0.138 4.138 28 C -0.217 4.217 29 H 0.268 0.732 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 -21.603 2.313 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.165 4.165 3 Si 0.750 3.250 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.435 4.435 8 H 0.116 0.884 9 N -0.130 5.130 10 C 0.283 3.717 11 O -0.472 6.472 12 C -0.132 4.132 13 C -0.071 4.071 14 C -0.177 4.177 15 C 0.084 3.916 16 O -0.222 6.222 17 C -0.014 4.014 18 C 0.026 3.974 19 H 0.100 0.900 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.029 4.029 23 O -0.289 6.289 24 C -0.239 4.239 25 C -0.060 4.060 26 C 0.025 3.975 27 C -0.175 4.175 28 C -0.255 4.255 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.160 -21.242 2.243 22.231 hybrid contribution 0.507 0.588 -0.040 0.777 sum -5.653 -20.655 2.203 21.527 Atomic orbital electron populations 1.69851 1.05820 1.27592 1.47502 1.25323 0.95530 0.99442 0.96223 0.85911 0.79933 0.81449 0.77756 1.19269 1.20685 1.20685 1.19628 0.92900 0.81898 1.49090 0.88394 1.42997 1.18070 1.06642 1.45261 1.17874 0.87299 0.83509 0.83013 1.90605 1.20589 1.85559 1.50495 1.20163 0.93701 0.94573 1.04731 1.21682 0.93155 0.98347 0.93962 1.20302 1.00195 0.89328 1.07893 1.19122 0.90009 0.85905 0.96596 1.86035 1.35425 1.12419 1.88331 1.22918 0.94123 0.82337 1.02050 1.23002 0.92198 0.93010 0.89204 0.90002 1.23262 0.98970 0.93755 1.02718 1.23132 0.98126 0.98756 0.99239 1.23154 1.00075 0.81866 0.97847 1.88554 1.73439 1.25781 1.41116 1.21023 0.92587 0.99097 1.11222 1.20963 0.99948 0.90575 0.94500 1.21152 0.88327 1.01325 0.86650 1.22728 1.02116 0.91998 1.00685 1.23548 1.01915 0.95183 1.04900 0.92204 0.83724 0.85378 0.90700 0.91286 0.89264 0.89821 0.89762 0.90305 0.91213 0.91290 0.85959 0.85437 0.87412 0.89410 0.89700 0.89463 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.35 10.46 55.50 0.58 -21.77 16 2 C 0.04 1.02 4.91 -17.46 -0.09 0.94 16 3 Si 0.92 20.62 29.56 -169.99 -5.03 15.60 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.31 -8.50 8.87 -15.00 -0.13 -8.64 16 8 H 0.10 2.86 7.42 -52.49 -0.39 2.47 16 9 N -0.41 -10.61 2.92 -108.92 -0.32 -10.93 16 10 C 0.49 12.58 7.25 -12.49 -0.09 12.49 16 11 O -0.59 -16.85 16.46 5.26 0.09 -16.77 16 12 C -0.13 -2.67 5.03 -104.96 -0.53 -3.20 16 13 C -0.05 -0.98 7.55 -39.20 -0.30 -1.28 16 14 C -0.16 -2.59 9.97 -39.50 -0.39 -2.99 16 15 C 0.13 2.03 6.70 -39.01 -0.26 1.77 16 16 O -0.31 -4.44 10.12 -19.59 -0.20 -4.64 16 17 C 0.06 0.65 4.44 37.16 0.17 0.81 16 18 C 0.08 0.77 3.72 -25.70 -0.10 0.67 16 19 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 20 C -0.15 -0.89 6.58 -24.43 -0.16 -1.05 16 21 C -0.15 -0.82 7.02 -24.73 -0.17 -0.99 16 22 C 0.05 0.35 7.80 37.88 0.30 0.65 16 23 O -0.37 -4.20 11.04 -35.96 -0.40 -4.60 16 24 C -0.22 -3.39 9.01 -39.50 -0.36 -3.75 16 25 C -0.04 -0.74 9.59 -39.20 -0.38 -1.12 16 26 C 0.13 2.89 2.03 -67.94 -0.14 2.76 16 27 C -0.14 -2.87 8.50 -26.69 -0.23 -3.10 16 28 C -0.22 -4.15 8.65 -26.69 -0.23 -4.38 16 29 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 30 H 0.15 2.74 4.87 -52.49 -0.26 2.48 16 31 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 33 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.12 1.50 6.27 -52.49 -0.33 1.17 16 41 H 0.13 2.31 7.94 -52.49 -0.42 1.89 16 42 H 0.11 2.41 6.16 -51.92 -0.32 2.09 16 43 H 0.09 1.98 8.00 -51.93 -0.42 1.56 16 44 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 45 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -32.07 373.19 -9.44 -41.51 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.70 Total: 6.37 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.09 Total: -10.40 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.26 Total: -32.70 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.51 Total: -26.00 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.07 -9.44 -41.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058291085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.576 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds