Wall clock time and date at job start Tue Mar 31 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86804 * 119.99713 * 2 1 4 4 H 1.48504 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46936 * 300.00177 * 3 2 1 6 6 H 1.48494 * 109.47324 * 59.99888 * 3 2 1 7 7 C 1.39021 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00041 * 173.38316 * 7 2 1 9 9 N 1.36903 * 119.99623 * 353.38849 * 7 2 1 10 10 C 1.34778 * 119.99966 * 152.97934 * 9 7 2 11 11 O 1.21619 * 119.99857 * 6.05447 * 10 9 7 12 12 C 1.47495 * 120.00240 * 186.05657 * 10 9 7 13 13 C 1.39806 * 120.09179 * 31.74868 * 12 10 9 14 14 C 1.37686 * 119.89865 * 180.27989 * 13 12 10 15 15 C 1.39003 * 120.09875 * 359.45158 * 14 13 12 16 16 O 1.35717 * 119.90447 * 180.28036 * 15 14 13 17 17 C 1.42903 * 116.99553 * 179.97438 * 16 15 14 18 18 C 1.53007 * 109.46697 * 179.97438 * 17 16 15 19 19 H 1.08992 * 110.27341 * 54.30162 * 18 17 16 20 20 C 1.54943 * 110.30626 * 176.39254 * 18 17 16 21 21 C 1.55408 * 100.89397 * 155.28855 * 20 18 17 22 22 C 1.54383 * 102.30746 * 325.98824 * 21 20 18 23 23 O 1.43237 * 107.58937 * 21.28423 * 22 21 20 24 24 C 1.39013 * 120.18806 * 0.29922 * 15 14 13 25 25 C 1.37686 * 120.09421 * 359.97438 * 24 15 14 26 26 C 1.46499 * 120.00140 * 332.96769 * 9 7 2 27 27 C 1.52996 * 117.50319 * 311.70974 * 26 9 7 28 28 C 1.52996 * 117.50427 * 243.04297 * 26 9 7 29 29 H 0.96996 * 120.00610 * 5.01508 * 1 2 3 30 30 H 1.07994 * 120.04748 * 0.02909 * 13 12 10 31 31 H 1.08004 * 119.94642 * 179.73035 * 14 13 12 32 32 H 1.08993 * 109.47504 * 299.99333 * 17 16 15 33 33 H 1.09000 * 109.46991 * 60.00210 * 17 16 15 34 34 H 1.09007 * 111.12616 * 273.27802 * 20 18 17 35 35 H 1.08993 * 111.13207 * 37.43708 * 20 18 17 36 36 H 1.09001 * 110.88786 * 207.74940 * 21 20 18 37 37 H 1.09003 * 110.93752 * 84.24924 * 21 20 18 38 38 H 1.08996 * 109.83006 * 261.76857 * 22 21 20 39 39 H 1.09002 * 109.83139 * 140.79934 * 22 21 20 40 40 H 1.07994 * 119.94972 * 179.97438 * 24 15 14 41 41 H 1.08000 * 120.04678 * 179.97438 * 25 24 15 42 42 H 1.09009 * 115.54392 * 97.37389 * 26 9 7 43 43 H 1.08999 * 117.49458 * 359.97438 * 27 26 9 44 44 H 1.08997 * 117.49981 * 145.02012 * 27 26 9 45 45 H 1.08997 * 117.50076 * 214.98151 * 28 26 9 46 46 H 1.09004 * 117.49566 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7078 1.3465 -0.0006 5 1 1.8889 2.3965 -1.2125 6 1 1.8890 2.3965 1.2124 7 6 2.0090 -1.2039 0.0005 8 1 3.0835 -1.2070 -0.1072 9 7 1.3313 -2.3855 0.1376 10 6 1.8423 -3.5196 -0.3813 11 8 2.9543 -3.5158 -0.8739 12 6 1.0531 -4.7652 -0.3519 13 6 -0.3416 -4.7136 -0.4350 14 6 -1.0747 -5.8785 -0.4013 15 6 -0.4297 -7.1053 -0.2963 16 8 -1.1560 -8.2515 -0.2692 17 6 -0.4296 -9.4773 -0.1605 18 6 -1.4104 -10.6516 -0.1446 19 1 -2.0657 -10.6081 -1.0145 20 6 -0.6398 -11.9955 -0.1185 21 6 -1.6991 -12.9289 0.5310 22 6 -2.4179 -11.9782 1.5123 23 8 -2.1853 -10.6376 1.0648 24 6 0.9571 -7.1616 -0.2187 25 6 1.6977 -6.0012 -0.2460 26 6 0.0507 -2.4174 0.8485 27 6 -0.0191 -1.7228 2.2099 28 6 -0.0261 -3.2514 2.1288 29 1 -0.4851 0.8367 -0.0734 30 1 -0.8432 -3.7611 -0.5214 31 1 -2.1524 -5.8392 -0.4611 32 1 0.2437 -9.5774 -1.0118 33 1 0.1497 -9.4757 0.7628 34 1 -0.3897 -12.3247 -1.1272 35 1 0.2534 -11.9244 0.5021 36 1 -1.2191 -13.7483 1.0661 37 1 -2.3931 -13.3108 -0.2177 38 1 -2.0137 -12.1084 2.5161 39 1 -3.4876 -12.1874 1.5131 40 1 1.4542 -8.1168 -0.1368 41 1 2.7751 -6.0457 -0.1852 42 1 -0.8379 -2.3798 0.2182 43 1 0.8880 -1.2425 2.5768 44 1 -0.9536 -1.2287 2.4755 45 1 -0.9653 -3.7622 2.3411 46 1 0.8761 -3.7768 2.4420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058291085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:54 Heat of formation + Delta-G solvation = -64.025392 kcal Electronic energy + Delta-G solvation = -28129.702097 eV Core-core repulsion = 24178.635314 eV Total energy + Delta-G solvation = -3951.066783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48574 -40.72629 -39.97671 -38.08251 -37.73773 -34.90328 -33.22228 -33.15645 -32.36499 -31.80645 -30.68683 -27.21343 -26.78422 -24.38082 -23.88464 -23.11655 -22.88911 -22.48745 -21.92745 -20.93143 -19.27665 -18.74482 -18.17336 -17.93721 -17.17842 -17.04600 -16.55170 -16.50173 -16.30740 -15.83892 -15.71693 -15.44181 -14.93714 -14.90784 -14.53779 -14.44576 -14.13957 -13.89821 -13.60827 -13.35565 -13.31136 -12.99074 -12.82786 -12.67131 -12.52541 -12.30582 -12.27081 -12.21399 -12.11661 -11.87680 -11.78274 -11.66239 -11.56105 -11.11090 -10.68940 -10.48737 -10.31324 -9.95333 -9.65857 -9.11734 -8.29825 -5.96359 0.13648 0.42112 1.37078 1.40717 1.53079 2.06535 2.12843 2.26827 2.81423 2.84714 2.96858 3.12964 3.25330 3.52947 3.76333 3.84256 3.89838 3.96232 3.99007 4.10608 4.16962 4.18782 4.32390 4.33806 4.41850 4.43708 4.45635 4.54051 4.59092 4.71706 4.83898 4.83968 4.91021 4.97533 5.02445 5.06290 5.11914 5.22162 5.25062 5.30922 5.37512 5.42470 5.49575 5.59324 5.72004 6.08150 6.12633 6.44028 6.53787 7.16637 7.44533 8.02836 8.72985 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.030361 B = 0.002392 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.026408 B =11704.066595 C =12195.861513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.981 3.019 4 H -0.279 1.279 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.347 4.347 8 H 0.066 0.934 9 N -0.423 5.423 10 C 0.480 3.520 11 O -0.638 6.638 12 C -0.158 4.158 13 C -0.050 4.050 14 C -0.157 4.157 15 C 0.143 3.857 16 O -0.316 6.316 17 C 0.050 3.950 18 C 0.078 3.922 19 H 0.080 0.920 20 C -0.143 4.143 21 C -0.149 4.149 22 C 0.037 3.963 23 O -0.405 6.405 24 C -0.207 4.207 25 C -0.046 4.046 26 C 0.114 3.886 27 C -0.140 4.140 28 C -0.182 4.182 29 H 0.274 0.726 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.159 0.841 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.120 0.880 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -23.956 2.767 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.190 4.190 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.083 0.917 9 N -0.139 5.139 10 C 0.272 3.728 11 O -0.527 6.527 12 C -0.161 4.161 13 C -0.069 4.069 14 C -0.175 4.175 15 C 0.097 3.903 16 O -0.230 6.230 17 C -0.025 4.025 18 C 0.021 3.979 19 H 0.098 0.902 20 C -0.180 4.180 21 C -0.186 4.186 22 C -0.039 4.039 23 O -0.325 6.325 24 C -0.225 4.225 25 C -0.065 4.065 26 C 0.010 3.990 27 C -0.177 4.177 28 C -0.220 4.220 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.176 0.824 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.138 0.862 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.805 -23.614 2.719 25.019 hybrid contribution 0.918 1.158 -0.179 1.488 sum -6.887 -22.456 2.540 23.626 Atomic orbital electron populations 1.69909 1.06298 1.28615 1.46313 1.25938 0.96464 1.01521 0.95122 0.85057 0.78136 0.77830 0.78426 1.20368 1.19846 1.19061 1.19490 0.92029 0.83804 1.52189 0.91654 1.43170 1.18955 1.06230 1.45532 1.18687 0.87120 0.85030 0.81986 1.90536 1.22907 1.86673 1.52600 1.19860 0.94372 0.93154 1.08709 1.21506 0.92064 0.98987 0.94298 1.20458 1.01144 0.88836 1.07091 1.19199 0.90105 0.86465 0.94520 1.86056 1.36228 1.13037 1.87665 1.23312 0.94888 0.81008 1.03251 1.23138 0.92297 0.93920 0.88564 0.90185 1.23284 0.98855 0.91816 1.04075 1.23140 0.97954 0.98549 0.98952 1.23349 1.00769 0.81105 0.98661 1.88509 1.73986 1.28072 1.41974 1.21254 0.92483 0.99381 1.09419 1.20996 0.99970 0.90746 0.94780 1.21191 0.86721 1.03998 0.87119 1.22697 1.01763 0.93459 0.99815 1.23501 1.02994 0.94022 1.01437 0.91564 0.84574 0.83220 0.88425 0.90826 0.87372 0.89255 0.88021 0.89471 0.90852 0.90963 0.82382 0.86042 0.87622 0.91687 0.88120 0.86154 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.16 10.46 21.68 0.23 -44.94 16 2 C 0.01 0.73 4.91 84.95 0.42 1.15 16 3 Si 0.98 43.00 29.56 68.60 2.03 45.03 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.35 -20.24 8.87 84.09 0.75 -19.49 16 8 H 0.07 4.13 7.42 -2.91 -0.02 4.11 16 9 N -0.42 -22.77 2.92 -616.75 -1.80 -24.57 16 10 C 0.48 25.82 7.25 86.68 0.63 26.44 16 11 O -0.64 -39.11 16.46 -4.09 -0.07 -39.18 16 12 C -0.16 -6.71 5.03 -20.08 -0.10 -6.81 16 13 C -0.05 -1.83 7.55 22.52 0.17 -1.66 16 14 C -0.16 -4.80 9.97 22.32 0.22 -4.58 16 15 C 0.14 4.12 6.70 22.64 0.15 4.27 16 16 O -0.32 -8.15 10.12 -89.69 -0.91 -9.06 16 17 C 0.05 0.90 4.44 71.98 0.32 1.22 16 18 C 0.08 1.22 3.72 31.26 0.12 1.34 16 19 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 20 C -0.14 -1.21 6.58 32.09 0.21 -1.00 16 21 C -0.15 -1.11 7.02 31.89 0.22 -0.88 16 22 C 0.04 0.48 7.80 72.45 0.56 1.05 16 23 O -0.41 -8.45 11.04 -148.28 -1.64 -10.09 16 24 C -0.21 -5.86 9.01 22.33 0.20 -5.66 16 25 C -0.05 -1.66 9.59 22.52 0.22 -1.45 16 26 C 0.11 5.12 2.03 44.99 0.09 5.22 16 27 C -0.14 -5.83 8.50 30.62 0.26 -5.57 16 28 C -0.18 -6.79 8.65 30.62 0.26 -6.52 16 29 H 0.27 13.25 8.32 -92.71 -0.77 12.48 16 30 H 0.14 5.19 4.87 -2.91 -0.01 5.17 16 31 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 32 H 0.10 1.32 7.65 -2.39 -0.02 1.30 16 33 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 34 H 0.11 0.52 8.14 -2.38 -0.02 0.51 16 35 H 0.09 0.67 8.06 -2.39 -0.02 0.65 16 36 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.16 3.28 6.27 -2.91 -0.02 3.26 16 41 H 0.12 4.50 7.94 -2.91 -0.02 4.48 16 42 H 0.11 4.77 6.16 -2.38 -0.01 4.76 16 43 H 0.06 3.00 8.00 -2.39 -0.02 2.98 16 44 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 45 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 46 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -73.29 373.19 3.53 -69.76 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.98 Total: 25.99 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.70 Total: -12.94 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.57 Total: -69.51 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -2.61 Total: -58.32 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -73.29 3.53 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058291085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.731 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds