Wall clock time and date at job start Tue Mar 31 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38016 * 120.06683 * 2 1 4 4 C 1.38318 * 120.12754 * 180.30206 * 3 2 1 5 5 C 1.38355 * 120.27265 * 359.72104 * 4 3 2 6 6 C 1.37970 * 120.13441 * 359.97438 * 5 4 3 7 7 C 1.39438 * 120.06752 * 179.72914 * 2 1 3 8 8 C 1.48087 * 120.13264 * 359.97287 * 7 2 1 9 9 N 1.29912 * 126.51978 * 353.15475 * 8 7 2 10 10 O 1.21017 * 111.54503 * 179.97438 * 9 8 7 11 11 C 1.34237 * 110.89098 * 359.76780 * 10 9 8 12 12 O 1.21612 * 126.87443 * 180.26885 * 11 10 9 13 13 N 1.35477 * 106.25207 * 0.37334 * 11 10 9 14 14 C 1.46502 * 127.82248 * 179.91832 * 13 11 10 15 15 C 1.50704 * 109.46893 * 263.29958 * 14 13 11 16 16 O 1.21288 * 119.99852 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00107 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99758 * 359.97438 * 17 15 14 19 19 C 1.46500 * 119.99768 * 179.97438 * 17 15 14 20 20 C 1.50701 * 109.46907 * 90.00067 * 19 17 15 21 21 H 1.07991 * 120.00441 * 359.97438 * 20 19 17 22 22 C 1.37884 * 119.99574 * 179.97438 * 20 19 17 23 23 N 1.31513 * 119.99974 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99776 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46885 * 60.00459 * 24 22 20 26 26 H 1.48500 * 109.47176 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47237 * 300.00417 * 24 22 20 28 28 H 1.09003 * 109.46711 * 270.27681 * 1 2 3 29 29 H 1.09000 * 109.47083 * 30.27210 * 1 2 3 30 30 H 1.09000 * 109.47519 * 150.27503 * 1 2 3 31 31 H 1.07991 * 119.93521 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.86143 * 179.70498 * 4 3 2 33 33 H 1.08000 * 119.93340 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.07161 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.47772 * 143.29892 * 14 13 11 36 36 H 1.09000 * 109.47247 * 23.29658 * 14 13 11 37 37 H 1.09000 * 109.46709 * 90.00023 * 18 17 15 38 38 H 1.08996 * 109.46608 * 210.00137 * 18 17 15 39 39 H 1.08997 * 109.46912 * 329.99857 * 18 17 15 40 40 H 1.09005 * 109.46741 * 209.99916 * 19 17 15 41 41 H 1.09000 * 109.47043 * 329.99413 * 19 17 15 42 42 H 0.97000 * 119.99673 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1945 0.0000 4 6 3.5816 1.1959 -0.0063 5 6 4.2804 0.0018 -0.0068 6 6 3.6003 -1.1987 -0.0005 7 6 2.2056 -1.2067 0.0057 8 6 1.4697 -2.4918 0.0124 9 7 0.1860 -2.6469 0.1381 10 8 -0.1257 -3.8158 0.1063 11 6 0.9553 -4.5952 -0.0549 12 8 0.9753 -5.8088 -0.1298 13 7 2.0198 -3.7593 -0.1150 14 6 3.4315 -4.1132 -0.2829 15 6 4.1019 -4.1585 1.0660 16 8 3.4634 -3.9184 2.0689 17 7 5.4110 -4.4659 1.1580 18 6 6.1820 -4.7564 -0.0533 19 6 6.0627 -4.5094 2.4693 20 6 5.9546 -5.9007 3.0381 21 1 5.4505 -6.6750 2.4790 22 6 6.4994 -6.1852 4.2724 23 7 7.1129 -5.2421 4.9535 24 14 6.3648 -7.9096 4.9777 25 1 7.0287 -8.8721 4.0621 26 1 7.0256 -7.9538 6.3069 27 1 4.9328 -8.2738 5.1250 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6586 2.1297 0.0004 32 1 4.1184 2.1331 -0.0111 33 1 5.3604 0.0093 -0.0114 34 1 4.1468 -2.1302 -0.0014 35 1 3.9216 -3.3662 -0.9073 36 1 3.5069 -5.0907 -0.7591 37 1 6.6130 -3.8329 -0.4399 38 1 6.9809 -5.4587 0.1844 39 1 5.5256 -5.1938 -0.8056 40 1 7.1138 -4.2415 2.3617 41 1 5.5748 -3.8032 3.1412 42 1 7.4958 -5.4422 5.8220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058377584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:04 Heat of formation + Delta-G solvation = 35.968160 kcal Electronic energy + Delta-G solvation = -28949.006578 eV Core-core repulsion = 24898.735497 eV Total energy + Delta-G solvation = -4050.271081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.23847 -39.99948 -39.33829 -38.23583 -36.53414 -35.05663 -33.68247 -32.74205 -31.98470 -30.90256 -29.55163 -27.68515 -27.27125 -25.98811 -24.75091 -23.62705 -22.63115 -22.40393 -21.03346 -19.23367 -18.40489 -17.97340 -17.27523 -16.83206 -16.59760 -16.43599 -16.15843 -15.72966 -15.04533 -15.02445 -14.77542 -14.29554 -14.19369 -13.86415 -13.66428 -13.59469 -13.10990 -13.06167 -12.91167 -12.46031 -12.32932 -12.12172 -12.06815 -11.95940 -11.79810 -11.48851 -11.30736 -11.28558 -10.98667 -10.65708 -10.46874 -10.24822 -9.82850 -9.73508 -9.16866 -8.95465 -8.57267 -8.50609 -7.91126 -6.12684 -4.17914 0.46570 1.10904 1.59642 1.97929 2.20930 2.94331 3.25125 3.28976 3.33508 3.37962 3.50362 3.59319 3.86036 4.30052 4.38687 4.40612 4.56396 4.64689 4.69677 4.74672 4.93497 5.05480 5.22620 5.23915 5.35725 5.39887 5.46427 5.52642 5.62218 5.65049 5.67746 5.80097 6.02243 6.07269 6.14566 6.21900 6.29516 6.63816 6.81365 7.24000 7.32036 7.40729 7.82461 8.07875 8.11602 8.11771 8.63167 8.86898 9.47758 10.95455 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.003976 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.877251 B = 7040.837426 C = 8188.874390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 C -0.124 4.124 4 C -0.092 4.092 5 C -0.121 4.121 6 C -0.090 4.090 7 C -0.035 4.035 8 C 0.293 3.707 9 N -0.331 5.331 10 O -0.008 6.008 11 C 0.570 3.430 12 O -0.475 6.475 13 N -0.533 5.533 14 C 0.104 3.896 15 C 0.483 3.517 16 O -0.519 6.519 17 N -0.593 5.593 18 C 0.074 3.926 19 C 0.247 3.753 20 C -0.532 4.532 21 H 0.058 0.942 22 C 0.064 3.936 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 13.680 -16.153 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.038 4.038 3 C -0.142 4.142 4 C -0.111 4.111 5 C -0.138 4.138 6 C -0.110 4.110 7 C -0.037 4.037 8 C 0.027 3.973 9 N -0.068 5.068 10 O -0.048 6.048 11 C 0.322 3.678 12 O -0.354 6.354 13 N -0.269 5.269 14 C -0.019 4.019 15 C 0.267 3.733 16 O -0.394 6.394 17 N -0.326 5.326 18 C -0.070 4.070 19 C 0.129 3.871 20 C -0.571 4.571 21 H 0.076 0.924 22 C -0.139 4.139 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.867 13.531 -15.333 21.571 hybrid contribution 0.878 -1.583 0.506 1.880 sum -5.989 11.948 -14.826 19.961 Atomic orbital electron populations 1.21150 0.89892 1.03886 1.03566 1.19950 0.96846 0.91213 0.95837 1.21001 0.94252 0.97229 1.01672 1.21367 0.94251 0.98390 0.97067 1.21088 1.00553 0.91676 1.00530 1.21523 0.92443 0.99626 0.97407 1.17258 0.92232 0.86841 1.07344 1.22576 0.88869 0.86978 0.98864 1.74265 1.11577 0.97171 1.23778 1.85563 1.31345 1.12010 1.75841 1.20413 0.80163 0.87115 0.80121 1.91171 1.82982 1.06517 1.54777 1.46154 1.08718 1.06575 1.65498 1.21983 0.75882 1.05257 0.98820 1.20269 0.83342 0.79802 0.89923 1.90766 1.62995 1.48712 1.36965 1.48187 1.08046 1.66330 1.10043 1.21797 0.97361 1.00877 0.86973 1.19371 0.92426 0.98132 0.77195 1.21364 1.36714 0.95545 1.03478 0.92423 1.24915 0.94900 0.97583 0.96469 1.69911 1.36909 1.32709 1.13689 0.86547 0.78546 0.84127 0.78200 1.20123 1.21071 1.20104 0.90226 0.91421 0.88981 0.85056 0.85269 0.84894 0.85248 0.85723 0.85220 0.93017 0.89864 0.92434 0.94491 0.93701 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.10 36.01 0.33 -0.92 16 2 C -0.04 -0.40 5.91 -104.26 -0.62 -1.02 16 3 C -0.12 -1.10 9.69 -39.63 -0.38 -1.49 16 4 C -0.09 -0.79 10.04 -39.51 -0.40 -1.19 16 5 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 6 C -0.09 -1.10 9.06 -39.22 -0.36 -1.46 16 7 C -0.03 -0.45 5.87 -104.95 -0.62 -1.07 16 8 C 0.29 4.40 7.63 -153.62 -1.17 3.23 16 9 N -0.33 -5.04 8.70 32.10 0.28 -4.76 16 10 O -0.01 -0.13 11.25 -7.54 -0.08 -0.21 16 11 C 0.57 10.18 9.34 54.34 0.51 10.69 16 12 O -0.48 -9.66 17.98 -18.90 -0.34 -10.00 16 13 N -0.53 -8.51 2.35 -120.62 -0.28 -8.80 16 14 C 0.10 1.47 4.38 -5.19 -0.02 1.45 16 15 C 0.48 9.37 6.33 -10.98 -0.07 9.30 16 16 O -0.52 -12.75 16.01 5.55 0.09 -12.66 16 17 N -0.59 -11.41 2.86 -182.95 -0.52 -11.93 16 18 C 0.07 0.97 10.24 59.85 0.61 1.59 16 19 C 0.25 6.13 5.16 -5.19 -0.03 6.10 16 20 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 24 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.09 1.01 5.39 -51.93 -0.28 0.73 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.62 3.23 -52.49 -0.17 1.45 16 35 H 0.13 1.24 5.84 -51.93 -0.30 0.93 16 36 H 0.13 1.61 7.38 -51.93 -0.38 1.23 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 39 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 40 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 41 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -35.78 357.43 -7.56 -43.34 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.77 Total: -2.10 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -3.03 Total: 10.19 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.21 Total: -50.83 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.34 Total: -22.87 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.78 -7.56 -43.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.310 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds