Wall clock time and date at job start Tue Mar 31 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46891 * 2 1 4 4 N 1.46498 * 109.46914 * 119.99811 * 2 1 3 5 5 C 1.46503 * 120.00087 * 119.21231 * 4 2 1 6 6 C 1.50698 * 109.47207 * 269.99929 * 5 4 2 7 7 H 1.08009 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00288 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99876 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00264 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47209 * 90.00001 * 10 8 6 12 12 H 1.48504 * 109.47576 * 210.00293 * 10 8 6 13 13 H 1.48506 * 109.47276 * 330.00092 * 10 8 6 14 14 C 1.34777 * 120.00257 * 299.21043 * 4 2 1 15 15 O 1.21284 * 119.99603 * 5.31055 * 14 4 2 16 16 C 1.50695 * 120.00092 * 185.31157 * 14 4 2 17 17 C 1.52997 * 109.47241 * 177.82304 * 16 14 4 18 18 S 1.81405 * 109.47383 * 179.97438 * 17 16 14 19 19 O 1.42098 * 108.57413 * 65.51413 * 18 17 16 20 20 O 1.42091 * 108.57936 * 294.48850 * 18 17 16 21 21 C 1.81399 * 101.92290 * 180.02562 * 18 17 16 22 22 C 1.54970 * 110.92233 * 66.53953 * 21 18 17 23 23 C 1.54263 * 104.15668 * 156.29506 * 22 21 18 24 24 C 1.53872 * 106.64633 * 336.44804 * 23 22 21 25 25 C 1.54273 * 106.59487 * 359.97343 * 24 23 22 26 26 H 1.08999 * 109.47495 * 306.61790 * 1 2 3 27 27 H 1.09000 * 109.47621 * 66.61548 * 1 2 3 28 28 H 1.09004 * 109.47310 * 186.61705 * 1 2 3 29 29 H 1.08997 * 109.47137 * 240.00077 * 2 1 3 30 30 H 1.09003 * 109.47286 * 173.88525 * 3 2 1 31 31 H 1.08998 * 109.47622 * 293.88365 * 3 2 1 32 32 H 1.09004 * 109.47452 * 53.88619 * 3 2 1 33 33 H 1.08999 * 109.46842 * 29.99605 * 5 4 2 34 34 H 1.08997 * 109.47274 * 149.99554 * 5 4 2 35 35 H 0.97007 * 119.99641 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47343 * 57.82535 * 16 14 4 37 37 H 1.09001 * 109.47476 * 297.82700 * 16 14 4 38 38 H 1.09000 * 109.47267 * 60.00006 * 17 16 14 39 39 H 1.09005 * 109.47624 * 300.00265 * 17 16 14 40 40 H 1.09002 * 110.67551 * 303.23870 * 21 18 17 41 41 H 1.08996 * 110.47467 * 37.64502 * 22 21 18 42 42 H 1.08994 * 110.53275 * 274.97383 * 22 21 18 43 43 H 1.09001 * 110.03016 * 217.13876 * 23 22 21 44 44 H 1.09005 * 110.03256 * 95.75746 * 23 22 21 45 45 H 1.08994 * 110.03460 * 119.25766 * 24 23 22 46 46 H 1.08997 * 110.03628 * 240.64976 * 24 23 22 47 47 H 1.09003 * 110.48503 * 142.28264 * 25 24 23 48 48 H 1.08996 * 110.49113 * 264.79869 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0619 6 6 1.9609 -3.1108 1.0272 7 1 0.8887 -3.0016 1.0976 8 6 2.5196 -4.3652 0.9044 9 7 3.8252 -4.4980 0.8182 10 14 1.4223 -5.8763 0.8621 11 1 1.0484 -6.1774 -0.5432 12 1 2.1515 -7.0341 1.4391 13 1 0.1944 -5.6189 1.6567 14 6 1.7059 -0.2209 2.4202 15 8 0.9428 0.7149 2.5340 16 6 2.3047 -0.8585 3.6474 17 6 1.8331 -0.1073 4.8940 18 16 2.5533 -0.8753 6.3713 19 8 3.9622 -0.6942 6.3344 20 8 2.0257 -2.1881 6.5020 21 6 1.8720 0.1555 7.6995 22 6 0.3360 -0.0211 7.8045 23 6 0.0089 0.3779 9.2583 24 6 1.3005 0.1802 10.0709 25 6 2.3684 -0.3330 9.0829 26 1 -0.3634 0.6130 0.8248 27 1 -0.3634 0.4079 -0.9432 28 1 -0.3634 -1.0208 0.1184 29 1 1.8933 -0.5138 -0.8900 30 1 3.1244 1.4445 0.1095 31 1 1.7688 1.9238 -0.9396 32 1 1.5900 1.9870 0.8302 33 1 3.4222 -1.8346 0.1383 34 1 3.5266 -1.9608 1.9107 35 1 4.2182 -5.3807 0.7322 36 1 3.3920 -0.8140 3.5861 37 1 1.9865 -1.8992 3.7081 38 1 0.7457 -0.1517 4.9554 39 1 2.1513 0.9335 4.8334 40 1 2.1299 1.2031 7.5443 41 1 0.0582 -1.0592 7.6222 42 1 -0.1736 0.6399 7.1036 43 1 -0.7815 -0.2612 9.6520 44 1 -0.3011 1.4222 9.2981 45 1 1.6178 1.1286 10.5043 46 1 1.1368 -0.5543 10.8595 47 1 3.3415 0.1005 9.3139 48 1 2.4208 -1.4214 9.1092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065587581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:06 Heat of formation + Delta-G solvation = -128.689945 kcal Electronic energy + Delta-G solvation = -27714.217339 eV Core-core repulsion = 23895.790442 eV Total energy + Delta-G solvation = -3818.426897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.46418 -38.21923 -36.85168 -35.91653 -35.55930 -33.58243 -32.57180 -31.19969 -29.47491 -29.10791 -27.04764 -26.64016 -24.99577 -22.85698 -21.73781 -21.10861 -20.60176 -18.74193 -18.28057 -17.23628 -16.66966 -16.31038 -16.23005 -15.85839 -15.58998 -15.18282 -14.84576 -14.36955 -14.28704 -13.81998 -13.61405 -13.48141 -13.24599 -13.03320 -12.58851 -12.37305 -12.03646 -11.99201 -11.89396 -11.82278 -11.79321 -11.63831 -11.58993 -11.49478 -11.45342 -11.30851 -11.09355 -10.95887 -10.88038 -10.76542 -10.72601 -10.65857 -10.39801 -10.27809 -10.05179 -9.71166 -8.90112 -8.54571 -7.74598 -6.17272 -4.25331 0.01234 2.78107 3.25533 3.29998 3.33566 3.38584 3.51416 3.82111 3.94415 4.13640 4.31968 4.35961 4.49936 4.77451 4.87498 4.94206 5.01680 5.07202 5.15656 5.21424 5.22539 5.34978 5.40541 5.53247 5.59782 5.65854 5.70431 5.73109 5.75645 5.79158 5.85915 5.93674 5.98834 6.05145 6.14306 6.19390 6.32905 6.42698 6.69485 6.77882 6.83900 7.16537 7.55472 7.77610 8.04889 8.31489 8.78610 8.96951 9.43316 10.89541 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003857 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.997982 B = 7257.344773 C = 8612.700891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.590 5.590 5 C 0.232 3.768 6 C -0.541 4.541 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.896 3.104 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.529 3.471 15 O -0.569 6.569 16 C -0.131 4.131 17 C -0.585 4.585 18 S 2.413 3.587 19 O -0.938 6.938 20 O -0.929 6.929 21 C -0.584 4.584 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.104 4.104 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.266 0.734 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 11.337 12.676 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.320 5.320 5 C 0.113 3.887 6 C -0.580 4.580 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.316 3.684 15 O -0.451 6.451 16 C -0.172 4.172 17 C -0.715 4.715 18 S 2.597 3.403 19 O -0.935 6.935 20 O -0.926 6.926 21 C -0.692 4.692 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.143 4.143 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.199 10.927 12.755 17.312 hybrid contribution -0.888 -0.314 -0.262 0.978 sum -5.087 10.613 12.493 17.164 Atomic orbital electron populations 1.22173 0.95600 1.02651 1.01693 1.20843 0.94320 0.92210 0.88205 1.22190 1.00926 0.96986 1.02188 1.48327 1.51076 1.28506 1.04129 1.19544 0.90138 0.80379 0.98688 1.21488 0.93814 0.90729 1.51962 0.91945 1.24947 0.95087 0.99121 0.94604 1.69917 1.09742 1.24129 1.48972 0.86520 0.80672 0.82187 0.78297 1.20545 1.20922 1.19636 1.19923 0.81079 0.82860 0.84532 1.90519 1.37187 1.30490 1.86886 1.21363 1.02876 1.01931 0.90998 1.30050 1.13906 1.12535 1.14979 1.08258 0.76377 0.77284 0.78386 1.93577 1.27258 1.86773 1.85894 1.93595 1.80915 1.32886 1.85240 1.31322 1.07367 1.15780 1.14771 1.22313 0.90024 1.03691 0.98895 1.22083 0.97769 1.01742 0.94090 1.22097 0.94391 1.01390 0.97742 1.22172 0.99854 1.01549 0.90692 0.90867 0.93161 0.92361 0.89792 0.93044 0.92604 0.91033 0.94469 0.94256 0.92415 0.87827 0.86313 0.84431 0.84822 0.84241 0.89267 0.89715 0.91139 0.91398 0.91378 0.91154 0.89805 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.01 37.16 0.33 -2.50 16 2 C 0.15 2.70 3.28 -67.93 -0.22 2.48 16 3 C -0.16 -2.62 9.01 37.16 0.33 -2.29 16 4 N -0.59 -12.19 2.41 -167.48 -0.40 -12.59 16 5 C 0.23 5.49 4.99 -5.19 -0.03 5.46 16 6 C -0.54 -14.11 9.39 -34.44 -0.32 -14.43 16 7 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 10 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.53 10.52 7.08 -10.99 -0.08 10.44 16 15 O -0.57 -11.46 12.37 5.55 0.07 -11.39 16 16 C -0.13 -2.35 4.20 -27.89 -0.12 -2.47 16 17 C -0.58 -7.96 4.94 37.16 0.18 -7.78 16 18 S 2.41 32.78 4.32 -107.50 -0.46 32.31 16 19 O -0.94 -15.60 18.10 -57.83 -1.05 -16.65 16 20 O -0.93 -15.75 17.45 -57.83 -1.01 -16.76 16 21 C -0.58 -5.52 3.29 -24.70 -0.08 -5.60 16 22 C -0.11 -0.97 6.05 -25.03 -0.15 -1.12 16 23 C -0.12 -0.88 6.80 -25.62 -0.17 -1.06 16 24 C -0.12 -0.88 6.80 -25.61 -0.17 -1.05 16 25 C -0.10 -0.96 6.28 -25.07 -0.16 -1.11 16 26 H 0.07 1.34 6.27 -51.93 -0.33 1.02 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.53 7.79 -51.93 -0.40 1.12 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.22 6.47 -51.93 -0.34 0.88 16 33 H 0.04 0.92 7.91 -51.93 -0.41 0.51 16 34 H 0.04 0.95 6.39 -51.93 -0.33 0.62 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.10 1.80 7.48 -51.93 -0.39 1.41 16 37 H 0.12 2.29 8.10 -51.93 -0.42 1.87 16 38 H 0.14 1.69 8.00 -51.92 -0.42 1.27 16 39 H 0.13 1.54 8.12 -51.92 -0.42 1.12 16 40 H 0.14 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.84 7.50 -51.93 -0.39 0.45 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -32.96 393.14 -10.42 -43.38 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.46 Total: 3.28 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -0.75 Total: -19.36 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.33 Total: -36.63 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.99 Total: -44.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 32.78 SS G_CDS: -0.46 Total: 32.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.96 -10.42 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065587581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.308 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds