Wall clock time and date at job start Tue Mar 31 2020 05:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46891 * 2 1 4 4 N 1.46498 * 109.46914 * 119.99811 * 2 1 3 5 5 C 1.46503 * 120.00087 * 119.21231 * 4 2 1 6 6 C 1.50698 * 109.47207 * 269.99929 * 5 4 2 7 7 H 1.08009 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00288 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99876 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00264 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47209 * 90.00001 * 10 8 6 12 12 H 1.48504 * 109.47576 * 210.00293 * 10 8 6 13 13 H 1.48506 * 109.47276 * 330.00092 * 10 8 6 14 14 C 1.34777 * 120.00257 * 299.21043 * 4 2 1 15 15 O 1.21284 * 119.99603 * 5.31055 * 14 4 2 16 16 C 1.50695 * 120.00092 * 185.31157 * 14 4 2 17 17 C 1.52997 * 109.47241 * 177.82304 * 16 14 4 18 18 S 1.81405 * 109.47383 * 179.97438 * 17 16 14 19 19 O 1.42098 * 108.57413 * 65.51413 * 18 17 16 20 20 O 1.42091 * 108.57936 * 294.48850 * 18 17 16 21 21 C 1.81399 * 101.92290 * 180.02562 * 18 17 16 22 22 C 1.54970 * 110.92233 * 66.53953 * 21 18 17 23 23 C 1.54263 * 104.15668 * 156.29506 * 22 21 18 24 24 C 1.53872 * 106.64633 * 336.44804 * 23 22 21 25 25 C 1.54273 * 106.59487 * 359.97343 * 24 23 22 26 26 H 1.08999 * 109.47495 * 306.61790 * 1 2 3 27 27 H 1.09000 * 109.47621 * 66.61548 * 1 2 3 28 28 H 1.09004 * 109.47310 * 186.61705 * 1 2 3 29 29 H 1.08997 * 109.47137 * 240.00077 * 2 1 3 30 30 H 1.09003 * 109.47286 * 173.88525 * 3 2 1 31 31 H 1.08998 * 109.47622 * 293.88365 * 3 2 1 32 32 H 1.09004 * 109.47452 * 53.88619 * 3 2 1 33 33 H 1.08999 * 109.46842 * 29.99605 * 5 4 2 34 34 H 1.08997 * 109.47274 * 149.99554 * 5 4 2 35 35 H 0.97007 * 119.99641 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47343 * 57.82535 * 16 14 4 37 37 H 1.09001 * 109.47476 * 297.82700 * 16 14 4 38 38 H 1.09000 * 109.47267 * 60.00006 * 17 16 14 39 39 H 1.09005 * 109.47624 * 300.00265 * 17 16 14 40 40 H 1.09002 * 110.67551 * 303.23870 * 21 18 17 41 41 H 1.08996 * 110.47467 * 37.64502 * 22 21 18 42 42 H 1.08994 * 110.53275 * 274.97383 * 22 21 18 43 43 H 1.09001 * 110.03016 * 217.13876 * 23 22 21 44 44 H 1.09005 * 110.03256 * 95.75746 * 23 22 21 45 45 H 1.08994 * 110.03460 * 119.25766 * 24 23 22 46 46 H 1.08997 * 110.03628 * 240.64976 * 24 23 22 47 47 H 1.09003 * 110.48503 * 142.28264 * 25 24 23 48 48 H 1.08996 * 110.49113 * 264.79869 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0619 6 6 1.9609 -3.1108 1.0272 7 1 0.8887 -3.0016 1.0976 8 6 2.5196 -4.3652 0.9044 9 7 3.8252 -4.4980 0.8182 10 14 1.4223 -5.8763 0.8621 11 1 1.0484 -6.1774 -0.5432 12 1 2.1515 -7.0341 1.4391 13 1 0.1944 -5.6189 1.6567 14 6 1.7059 -0.2209 2.4202 15 8 0.9428 0.7149 2.5340 16 6 2.3047 -0.8585 3.6474 17 6 1.8331 -0.1073 4.8940 18 16 2.5533 -0.8753 6.3713 19 8 3.9622 -0.6942 6.3344 20 8 2.0257 -2.1881 6.5020 21 6 1.8720 0.1555 7.6995 22 6 0.3360 -0.0211 7.8045 23 6 0.0089 0.3779 9.2583 24 6 1.3005 0.1802 10.0709 25 6 2.3684 -0.3330 9.0829 26 1 -0.3634 0.6130 0.8248 27 1 -0.3634 0.4079 -0.9432 28 1 -0.3634 -1.0208 0.1184 29 1 1.8933 -0.5138 -0.8900 30 1 3.1244 1.4445 0.1095 31 1 1.7688 1.9238 -0.9396 32 1 1.5900 1.9870 0.8302 33 1 3.4222 -1.8346 0.1383 34 1 3.5266 -1.9608 1.9107 35 1 4.2182 -5.3807 0.7322 36 1 3.3920 -0.8140 3.5861 37 1 1.9865 -1.8992 3.7081 38 1 0.7457 -0.1517 4.9554 39 1 2.1513 0.9335 4.8334 40 1 2.1299 1.2031 7.5443 41 1 0.0582 -1.0592 7.6222 42 1 -0.1736 0.6399 7.1036 43 1 -0.7815 -0.2612 9.6520 44 1 -0.3011 1.4222 9.2981 45 1 1.6178 1.1286 10.5043 46 1 1.1368 -0.5543 10.8595 47 1 3.3415 0.1005 9.3139 48 1 2.4208 -1.4214 9.1092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065587581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:05 Heat of formation + Delta-G solvation = -149.355091 kcal Electronic energy + Delta-G solvation = -27715.113447 eV Core-core repulsion = 23895.790442 eV Total energy + Delta-G solvation = -3819.323005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05074 -38.90978 -38.03240 -37.17442 -37.09466 -35.29107 -34.23935 -32.74227 -30.17697 -29.77101 -28.95994 -28.00325 -26.34809 -24.77917 -22.89194 -22.15895 -21.23478 -19.91136 -19.67855 -18.70273 -18.34355 -17.65594 -17.26469 -17.22080 -16.70389 -16.59384 -16.27478 -16.13898 -15.05398 -14.99678 -14.91677 -14.57268 -14.48114 -14.21572 -13.99742 -13.95342 -13.71205 -13.30194 -13.22931 -13.20629 -13.10630 -12.89228 -12.75319 -12.68067 -12.56545 -12.46428 -12.21618 -12.17812 -12.10649 -12.08849 -12.04569 -11.88946 -11.72393 -11.64151 -11.27967 -11.22858 -10.65806 -10.41577 -9.45421 -8.23001 -6.37903 -1.05451 1.38373 1.41178 1.50099 1.71682 1.75118 2.21988 2.40055 2.63326 2.93075 3.07360 3.32019 3.48891 3.51216 3.69395 3.81925 3.89587 4.13106 4.27157 4.33063 4.34196 4.37673 4.39318 4.43925 4.48462 4.58200 4.71329 4.74490 4.78036 4.80121 4.84608 4.97229 5.01727 5.02192 5.02929 5.06369 5.15441 5.20032 5.23595 5.30789 5.43329 5.44312 5.65575 5.91407 6.02906 6.55591 6.80269 7.28007 7.38732 8.82530 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003857 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.997982 B = 7257.344773 C = 8612.700891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 C -0.153 4.153 4 N -0.597 5.597 5 C 0.246 3.754 6 C -0.548 4.548 7 H 0.055 0.945 8 C 0.020 3.980 9 N -0.920 5.920 10 Si 0.952 3.048 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.525 3.475 15 O -0.568 6.568 16 C -0.139 4.139 17 C -0.579 4.579 18 S 2.406 3.594 19 O -0.978 6.978 20 O -0.975 6.975 21 C -0.552 4.552 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.119 4.119 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.028 0.972 35 H 0.268 0.732 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.175 0.825 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 13.316 13.545 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 C -0.211 4.211 4 N -0.327 5.327 5 C 0.125 3.875 6 C -0.586 4.586 7 H 0.073 0.927 8 C -0.180 4.180 9 N -0.559 5.559 10 Si 0.778 3.222 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.196 1.196 14 C 0.313 3.687 15 O -0.450 6.450 16 C -0.180 4.180 17 C -0.709 4.709 18 S 2.595 3.405 19 O -0.975 6.975 20 O -0.972 6.972 21 C -0.665 4.665 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.158 4.158 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.193 0.807 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.743 12.893 13.575 19.583 hybrid contribution -0.436 -0.861 -0.496 1.085 sum -6.180 12.032 13.079 18.815 Atomic orbital electron populations 1.22079 0.94785 1.01260 1.03015 1.21125 0.95020 0.93452 0.87164 1.22085 1.00549 0.95098 1.03379 1.48333 1.51038 1.27901 1.05456 1.19168 0.89899 0.81108 0.97357 1.21705 0.93677 0.91843 1.51407 0.92699 1.25670 0.96220 1.01761 0.94397 1.70006 1.11085 1.24796 1.49990 0.85633 0.78972 0.79005 0.78639 1.19501 1.20645 1.19579 1.20182 0.80980 0.82866 0.84703 1.90503 1.37093 1.30451 1.86943 1.21371 1.02835 1.01301 0.92466 1.30020 1.14824 1.13244 1.12802 1.08188 0.75624 0.77332 0.79331 1.93521 1.29863 1.87347 1.86740 1.93533 1.81236 1.36382 1.86055 1.31082 1.07772 1.15895 1.11783 1.22498 0.89117 1.03627 1.00739 1.22132 0.97899 1.02945 0.92713 1.22137 0.93601 1.02364 0.97350 1.22379 1.01379 1.01119 0.90882 0.91758 0.90044 0.94520 0.90095 0.93279 0.89614 0.92006 0.95797 0.95448 0.92269 0.88090 0.88533 0.82890 0.82265 0.80710 0.90599 0.87708 0.90628 0.89642 0.89659 0.90556 0.88713 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.01 71.98 0.65 -4.52 16 2 C 0.14 4.85 3.28 44.99 0.15 5.00 16 3 C -0.15 -4.61 9.01 71.98 0.65 -3.96 16 4 N -0.60 -25.00 2.41 -802.17 -1.93 -26.93 16 5 C 0.25 12.02 4.99 85.63 0.43 12.44 16 6 C -0.55 -29.26 9.39 25.60 0.24 -29.02 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.02 1.09 5.46 84.65 0.46 1.55 16 9 N -0.92 -52.32 13.29 21.44 0.28 -52.04 16 10 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 C 0.53 20.98 7.08 87.66 0.62 21.60 16 15 O -0.57 -22.31 12.37 -3.04 -0.04 -22.34 16 16 C -0.14 -5.14 4.20 29.85 0.13 -5.02 16 17 C -0.58 -15.46 4.94 71.98 0.36 -15.10 16 18 S 2.41 66.06 4.32 -56.49 -0.24 65.82 16 19 O -0.98 -33.44 18.10 -127.37 -2.31 -35.74 16 20 O -0.97 -34.68 17.45 -127.37 -2.22 -36.90 16 21 C -0.55 -9.23 3.29 31.91 0.11 -9.13 16 22 C -0.12 -1.82 6.05 31.70 0.19 -1.63 16 23 C -0.12 -1.38 6.80 31.32 0.21 -1.16 16 24 C -0.12 -1.38 6.80 31.32 0.21 -1.17 16 25 C -0.12 -1.97 6.28 31.67 0.20 -1.77 16 26 H 0.06 2.27 6.27 -2.39 -0.01 2.26 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 2.92 7.79 -2.39 -0.02 2.91 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 1.99 6.47 -2.38 -0.02 1.97 16 33 H 0.02 1.22 7.91 -2.39 -0.02 1.20 16 34 H 0.03 1.40 6.39 -2.39 -0.02 1.38 16 35 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 36 H 0.10 3.70 7.48 -2.39 -0.02 3.69 16 37 H 0.10 3.97 8.10 -2.39 -0.02 3.95 16 38 H 0.15 3.57 8.00 -2.39 -0.02 3.55 16 39 H 0.16 3.37 8.12 -2.39 -0.02 3.35 16 40 H 0.18 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.36 7.50 -2.39 -0.02 1.35 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 Total: -1.00 -72.42 393.14 1.09 -71.33 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.92 Total: 23.34 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 4.60 Total: -31.89 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.65 Total: -78.96 kcal Atomic # 8 Polarization: -90.42 SS G_CDS: -4.56 Total: -94.99 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 66.06 SS G_CDS: -0.24 Total: 65.82 kcal Total: -72.42 1.09 -71.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065587581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.023 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds