Wall clock time and date at job start Tue Mar 31 2020 05:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35972 * 117.00073 * 2 1 4 4 C 1.39122 * 119.95615 * 359.97438 * 3 2 1 5 5 C 1.37796 * 120.59906 * 180.02562 * 4 3 2 6 6 C 1.38970 * 120.04800 * 359.97438 * 5 4 3 7 7 O 1.34993 * 133.03939 * 180.02562 * 6 5 4 8 8 C 1.33786 * 111.34506 * 180.02562 * 7 6 5 9 9 C 1.50706 * 125.07534 * 180.02562 * 8 7 6 10 10 C 1.36068 * 109.85667 * 0.02562 * 8 7 6 11 11 C 1.47064 * 127.14387 * 180.02562 * 10 8 7 12 12 O 1.21652 * 119.99754 * 269.95951 * 11 10 8 13 13 N 1.34775 * 120.00120 * 89.95009 * 11 10 8 14 14 C 1.46508 * 119.99833 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46742 * 90.00406 * 14 13 11 16 16 H 1.08005 * 120.00207 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99733 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47331 * 59.99755 * 19 17 15 21 21 H 1.48503 * 109.47069 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47314 * 299.99502 * 19 17 15 23 23 C 1.46490 * 120.00137 * 0.02562 * 13 11 10 24 24 C 1.53008 * 109.47088 * 119.99692 * 23 13 11 25 25 C 1.53002 * 109.47530 * 239.99698 * 23 13 11 26 26 C 1.40211 * 119.34667 * 0.02562 * 6 5 4 27 27 C 1.38292 * 119.95849 * 179.76338 * 3 2 1 28 28 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47109 * 300.00237 * 1 2 3 30 30 H 1.09006 * 109.47277 * 60.00170 * 1 2 3 31 31 H 1.07995 * 119.70339 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.97341 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.46771 * 269.97831 * 9 8 7 34 34 H 1.09005 * 109.46733 * 29.97667 * 9 8 7 35 35 H 1.08999 * 109.47413 * 149.97575 * 9 8 7 36 36 H 1.08998 * 109.47126 * 210.00297 * 14 13 11 37 37 H 1.09005 * 109.47310 * 330.00751 * 14 13 11 38 38 H 0.97000 * 119.99769 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.47253 * 0.02562 * 23 13 11 40 40 H 1.08992 * 109.46953 * 60.00132 * 24 23 13 41 41 H 1.08998 * 109.46599 * 179.97438 * 24 23 13 42 42 H 1.08998 * 109.47326 * 299.99690 * 24 23 13 43 43 H 1.09001 * 109.46872 * 59.99959 * 25 23 13 44 44 H 1.08997 * 109.47209 * 180.02562 * 25 23 13 45 45 H 1.09000 * 109.46786 * 300.00135 * 25 23 13 46 46 H 1.07999 * 120.21103 * 359.96391 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2877 2.3777 -0.0005 5 6 1.8995 3.6124 -0.0011 6 6 3.2863 3.7019 -0.0005 7 8 4.1422 4.7458 -0.0004 8 6 5.4145 4.3322 -0.0004 9 6 6.6194 5.2375 0.0003 10 6 5.4585 2.9723 -0.0011 11 6 6.6589 2.1226 -0.0008 12 8 7.1556 1.7712 -1.0542 13 7 7.2088 1.7335 1.1666 14 6 8.4050 0.8876 1.1668 15 6 9.6354 1.7576 1.1672 16 1 9.5364 2.8331 1.1668 17 6 10.8877 1.1806 1.1669 18 7 11.0083 -0.1290 1.1669 19 14 12.4130 2.2590 1.1667 20 1 12.4132 3.1164 2.3793 21 1 13.6254 1.4016 1.1671 22 1 12.4129 3.1164 -0.0458 23 6 6.6105 2.1564 2.4351 24 6 6.1907 0.9230 3.2372 25 6 7.6334 2.9629 3.2377 26 6 4.0507 2.5264 0.0000 27 6 3.4273 1.2829 0.0049 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2096 2.3148 -0.0005 32 1 1.3008 4.5112 -0.0019 33 1 6.9102 5.4560 -1.0272 34 1 6.3749 6.1672 0.5142 35 1 7.4443 4.7442 0.5144 36 1 8.4047 0.2582 2.0567 37 1 8.4052 0.2583 0.2767 38 1 11.8893 -0.5349 1.1671 39 1 5.7353 2.7749 2.2357 40 1 7.0655 0.3042 3.4366 41 1 5.7459 1.2377 4.1813 42 1 5.4619 0.3485 2.6655 43 1 7.9325 3.8416 2.6663 44 1 7.1883 3.2771 4.1818 45 1 8.5083 2.3440 3.4371 46 1 4.0182 0.3789 0.0094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065592516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:19 Heat of formation + Delta-G solvation = -43.858189 kcal Electronic energy + Delta-G solvation = -29354.564602 eV Core-core repulsion = 25404.372334 eV Total energy + Delta-G solvation = -3950.192267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.51682 -39.77942 -38.92882 -36.64291 -35.86784 -33.32642 -32.67644 -31.22325 -30.79671 -30.23092 -27.83202 -27.36656 -26.73665 -26.59512 -23.66271 -22.94954 -22.08915 -21.49028 -20.65203 -18.55908 -18.20712 -17.28516 -16.50140 -16.41771 -16.31344 -15.84908 -15.69358 -15.30921 -15.03383 -14.37181 -14.15008 -13.93486 -13.51798 -13.47970 -13.23036 -13.10258 -12.98587 -12.93222 -12.46334 -12.44355 -12.39469 -12.21002 -11.72708 -11.66122 -11.53170 -11.24664 -11.01046 -10.92553 -10.83437 -10.80368 -10.63091 -10.35033 -10.02049 -9.92293 -9.55038 -9.07406 -8.40452 -8.20228 -7.98335 -7.64650 -6.01730 -4.05332 0.77584 1.30029 2.18554 2.61081 3.06670 3.28148 3.32383 3.37447 3.40248 3.58101 3.94429 4.40727 4.45547 4.57918 4.72627 4.89369 4.91514 4.92755 5.12633 5.21675 5.23656 5.29908 5.34104 5.37162 5.45126 5.53583 5.61925 5.66693 5.77118 5.88035 5.94745 6.06584 6.09843 6.18526 6.23345 6.30386 6.33298 6.36463 6.41092 6.65369 6.97513 7.05560 7.14947 7.26748 7.48926 7.57715 7.94518 8.26135 8.43875 8.91096 9.09194 9.58478 11.06442 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.003677 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.311887 B = 7612.769334 C = 8325.332624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.114 3.886 4 C -0.181 4.181 5 C -0.064 4.064 6 C 0.017 3.983 7 O -0.186 6.186 8 C 0.081 3.919 9 C -0.085 4.085 10 C -0.209 4.209 11 C 0.578 3.422 12 O -0.531 6.531 13 N -0.580 5.580 14 C 0.246 3.754 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.135 3.865 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.056 4.056 27 C -0.104 4.104 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.082 0.918 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.729 7.165 2.442 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.069 3.931 4 C -0.200 4.200 5 C -0.083 4.083 6 C -0.030 4.030 7 O -0.088 6.088 8 C 0.032 3.968 9 C -0.141 4.141 10 C -0.214 4.214 11 C 0.363 3.637 12 O -0.408 6.408 13 N -0.311 5.311 14 C 0.127 3.873 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.030 3.970 24 C -0.218 4.218 25 C -0.213 4.213 26 C -0.058 4.058 27 C -0.123 4.123 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.307 6.872 1.904 21.523 hybrid contribution 0.618 0.532 0.007 0.815 sum -19.689 7.404 1.911 21.122 Atomic orbital electron populations 1.23055 0.78521 1.03979 1.01206 1.86118 1.21172 1.26386 1.89076 1.18627 0.91605 0.84282 0.98626 1.20924 0.99997 0.90943 1.08102 1.19604 0.88753 0.98126 1.01802 1.19362 0.91640 0.84583 1.07380 1.83761 1.14643 1.33956 1.76418 1.22591 0.83487 0.92772 0.97993 1.20601 0.90782 0.98020 1.04713 1.20901 0.93239 0.93404 1.13811 1.17072 0.81823 0.80265 0.84540 1.90799 1.62885 1.56048 1.31049 1.48295 1.29100 1.50038 1.03653 1.19294 0.79757 0.89755 0.98514 1.21369 0.90427 0.93233 1.50838 0.92388 1.24918 0.98917 0.94964 0.95267 1.69920 1.23913 1.09063 1.50431 0.86619 0.82262 0.80327 0.78561 1.20269 1.21289 1.20228 1.20963 0.95604 0.95551 0.84850 1.22137 1.01944 0.98450 0.99298 1.22143 1.00378 1.00559 0.98261 1.19192 0.91422 0.93127 1.02048 1.19600 0.91252 0.97075 1.04389 0.88241 0.92665 0.92696 0.84317 0.84697 0.88909 0.89802 0.88059 0.94532 0.93977 0.92725 0.90905 0.91277 0.92367 0.92906 0.92853 0.93283 0.89951 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.79 10.49 -19.65 -0.21 -4.00 16 3 C 0.11 1.49 6.68 -39.23 -0.26 1.23 16 4 C -0.18 -1.91 9.01 -39.42 -0.36 -2.27 16 5 C -0.06 -0.73 10.06 -39.47 -0.40 -1.12 16 6 C 0.02 0.24 7.39 -38.57 -0.28 -0.04 16 7 O -0.19 -2.77 10.53 5.14 0.05 -2.71 16 8 C 0.08 1.28 7.23 -35.09 -0.25 1.03 16 9 C -0.09 -1.11 10.20 36.01 0.37 -0.75 16 10 C -0.21 -3.85 3.94 -103.25 -0.41 -4.25 16 11 C 0.58 12.86 7.06 -12.68 -0.09 12.77 16 12 O -0.53 -14.14 16.69 5.23 0.09 -14.05 16 13 N -0.58 -12.50 2.39 -168.86 -0.40 -12.90 16 14 C 0.25 6.32 4.60 -5.19 -0.02 6.30 16 15 C -0.52 -14.15 7.83 -34.44 -0.27 -14.42 16 16 H 0.06 1.55 7.63 -52.48 -0.40 1.15 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.36 3.16 -67.93 -0.21 2.14 16 24 C -0.16 -2.55 9.17 37.16 0.34 -2.21 16 25 C -0.16 -2.60 8.47 37.16 0.31 -2.29 16 26 C -0.06 -0.94 6.38 -104.98 -0.67 -1.61 16 27 C -0.10 -1.65 10.03 -39.24 -0.39 -2.04 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 31 H 0.14 0.99 6.27 -52.49 -0.33 0.66 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.49 7.80 -51.93 -0.41 1.09 16 36 H 0.04 0.95 6.43 -51.93 -0.33 0.62 16 37 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 1.20 6.15 -51.93 -0.32 0.88 16 40 H 0.07 1.20 6.66 -51.93 -0.35 0.85 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 46 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -33.67 382.67 -7.30 -40.97 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.61 Total: 0.71 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.70 Total: -4.74 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.33 Total: -38.36 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.67 -7.30 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065592516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.889 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds