Wall clock time and date at job start Tue Mar 31 2020 04:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47182 * 2 1 4 4 C 1.50705 * 109.46831 * 240.00666 * 2 1 3 5 5 H 1.08007 * 119.99683 * 240.00153 * 4 2 1 6 6 C 1.37875 * 120.00186 * 60.00098 * 4 2 1 7 7 N 1.31506 * 120.00098 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99699 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47142 * 59.99878 * 8 6 4 10 10 H 1.48500 * 109.46853 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46872 * 299.99776 * 8 6 4 12 12 N 1.46498 * 109.46970 * 120.00778 * 2 1 3 13 13 C 1.34775 * 119.99669 * 274.99168 * 12 2 1 14 14 O 1.21282 * 120.00172 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99952 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46661 * 60.01055 * 15 13 12 17 17 C 1.52994 * 109.47409 * 300.00789 * 15 13 12 18 18 O 1.42900 * 109.47130 * 180.02562 * 15 13 12 19 19 C 1.35894 * 116.99848 * 205.00265 * 18 15 13 20 20 C 1.38754 * 120.05823 * 354.51275 * 19 18 15 21 21 C 1.38127 * 119.94654 * 179.70026 * 20 19 18 22 22 C 1.38288 * 120.05258 * 0.59747 * 21 20 19 23 23 C 1.38243 * 120.11288 * 359.67386 * 22 21 20 24 24 C 1.38170 * 120.05574 * 0.03032 * 23 22 21 25 25 C 1.50700 * 120.02830 * 179.97438 * 24 23 22 26 26 F 1.39900 * 109.47097 * 0.02562 * 25 24 23 27 27 F 1.39901 * 109.46847 * 120.01642 * 25 24 23 28 28 F 1.39895 * 109.47385 * 240.01775 * 25 24 23 29 29 H 1.08995 * 109.46872 * 299.99839 * 1 2 3 30 30 H 1.09004 * 109.46643 * 59.99354 * 1 2 3 31 31 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00159 * 179.97438 * 7 6 4 33 33 H 0.97003 * 120.00164 * 94.99949 * 12 2 1 34 34 H 1.09002 * 109.47425 * 299.99797 * 17 15 13 35 35 H 1.09008 * 109.47185 * 59.99807 * 17 15 13 36 36 H 1.08998 * 109.47230 * 179.97438 * 17 15 13 37 37 H 1.08001 * 120.02749 * 359.97438 * 20 19 18 38 38 H 1.08001 * 119.97598 * 180.29488 * 21 20 19 39 39 H 1.08003 * 119.94546 * 179.69727 * 22 21 20 40 40 H 1.08002 * 119.97398 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8257 -2.5199 -4.0080 10 1 1.8259 -0.4202 -5.2206 11 1 3.8064 -1.1207 -4.0083 12 7 2.0183 -0.6908 1.1961 13 6 2.1472 -0.0185 2.3570 14 8 1.8584 1.1582 2.4117 15 6 2.6489 -0.7292 3.5876 16 1 3.6481 -1.1216 3.3984 17 6 1.7044 -1.8827 3.9312 18 8 2.6967 0.1889 4.6817 19 6 3.5726 -0.0894 5.6827 20 6 4.2871 -1.2787 5.6704 21 6 5.1814 -1.5564 6.6858 22 6 5.3558 -0.6558 7.7206 23 6 4.6410 0.5274 7.7381 24 6 3.7497 0.8126 6.7216 25 6 2.9704 2.1023 6.7416 26 9 3.3182 2.8396 7.8786 27 9 3.2692 2.8455 5.5946 28 9 1.6007 1.8192 6.7702 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7088 1.1616 -3.4843 33 1 2.2490 -1.6320 1.1524 34 1 0.7053 -1.4902 4.1204 35 1 1.6676 -2.5831 3.0967 36 1 2.0676 -2.3969 4.8210 37 1 4.1474 -1.9848 4.8652 38 1 5.7413 -2.4799 6.6742 39 1 6.0519 -0.8769 8.5162 40 1 4.7786 1.2290 8.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069563582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:58 Heat of formation + Delta-G solvation = -199.563582 kcal Electronic energy + Delta-G solvation = -28898.086049 eV Core-core repulsion = 24263.452055 eV Total energy + Delta-G solvation = -4634.633995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.99369 -47.56967 -47.37277 -40.79414 -39.04759 -37.50603 -34.82817 -33.03464 -32.35848 -31.47025 -30.27010 -28.68952 -26.03557 -25.30346 -24.79208 -22.97833 -22.18832 -20.99595 -19.47733 -19.06114 -18.32821 -18.29535 -17.80819 -17.33814 -16.03107 -15.75634 -15.65666 -15.44747 -15.12433 -14.68916 -14.45991 -14.35273 -14.20755 -14.05049 -13.86976 -13.59514 -13.57183 -13.38518 -13.05980 -12.90640 -12.73798 -12.52554 -12.45403 -11.96019 -11.83835 -11.72362 -11.29118 -11.14219 -11.11668 -10.97403 -10.75173 -10.37073 -10.27340 -9.58533 -9.12959 -9.10207 -8.62037 -8.57189 -8.02026 -6.16144 -4.26433 0.65886 1.00108 2.61715 2.77015 3.16680 3.22041 3.22945 3.28490 3.29311 3.77475 3.97450 4.04948 4.31722 4.50363 4.54010 4.56406 4.64807 4.83482 4.88857 4.95846 5.08188 5.16078 5.21255 5.36780 5.47256 5.54213 5.78957 5.84876 5.97807 6.03972 6.28811 6.77759 6.91738 7.00294 7.09906 7.36184 7.49120 7.63163 7.85727 8.09953 8.53380 8.71070 8.98750 9.40924 10.89770 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.002963 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.929874 B = 9448.168763 C =10158.263698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.505 3.495 14 O -0.525 6.525 15 C 0.062 3.938 16 H 0.098 0.902 17 C -0.175 4.175 18 O -0.273 6.273 19 C 0.187 3.813 20 C -0.217 4.217 21 C -0.046 4.046 22 C -0.166 4.166 23 C -0.035 4.035 24 C -0.221 4.221 25 C 0.516 3.484 26 F -0.185 7.185 27 F -0.166 7.166 28 F -0.173 7.173 29 H 0.016 0.984 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.389 0.611 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.143 0.857 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.804 -6.850 20.729 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.352 5.352 13 C 0.287 3.713 14 O -0.401 6.401 15 C 0.002 3.998 16 H 0.116 0.884 17 C -0.232 4.232 18 O -0.184 6.184 19 C 0.139 3.861 20 C -0.235 4.235 21 C -0.065 4.065 22 C -0.185 4.185 23 C -0.053 4.053 24 C -0.223 4.223 25 C 0.462 3.538 26 F -0.166 7.166 27 F -0.148 7.148 28 F -0.154 7.154 29 H 0.035 0.965 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.221 0.779 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.311 -5.639 20.542 22.522 hybrid contribution 0.381 -0.928 -0.943 1.377 sum 7.692 -6.568 19.599 22.055 Atomic orbital electron populations 1.22088 0.98269 0.99203 1.01082 1.18799 0.91147 0.94038 0.79475 0.93206 1.21148 1.32789 1.13355 0.90229 0.92066 1.24887 0.94750 0.94934 0.99068 1.69887 1.35569 1.22327 1.24121 0.86490 0.79162 0.79558 0.81773 1.20139 1.21089 1.20149 1.46447 1.65348 1.13503 1.09897 1.19786 0.79927 0.87651 0.83928 1.90736 1.49438 1.15488 1.84442 1.22527 1.01448 0.89944 0.85905 0.88435 1.22335 1.00863 0.96869 1.03158 1.86314 1.54724 1.49230 1.28137 1.18709 0.87972 0.92125 0.87245 1.21377 1.01750 0.97591 1.02829 1.21187 0.94474 0.98687 0.92106 1.21035 1.02441 0.94602 1.00382 1.20879 0.91834 0.97013 0.95617 1.19371 1.06774 0.95947 1.00211 1.17982 0.77992 0.84227 0.73627 1.93128 1.92013 1.79409 1.52060 1.93280 1.92903 1.78474 1.50101 1.93226 1.32554 1.93536 1.96062 0.96536 0.89023 0.95373 0.92408 0.77875 0.90445 0.89730 0.91118 0.83950 0.84797 0.84796 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.27 6.68 2.56 -69.08 -0.18 6.50 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -14.03 4.96 -54.93 -0.27 -14.30 16 13 C 0.50 10.07 7.20 -10.98 -0.08 9.99 16 14 O -0.53 -13.14 16.16 -14.35 -0.23 -13.37 16 15 C 0.06 0.89 2.64 -27.88 -0.07 0.82 16 16 H 0.10 1.14 6.31 -51.93 -0.33 0.81 16 17 C -0.17 -1.96 9.07 37.15 0.34 -1.62 16 18 O -0.27 -4.45 8.24 -39.32 -0.32 -4.78 16 19 C 0.19 2.49 6.48 -39.22 -0.25 2.23 16 20 C -0.22 -2.14 8.25 -39.43 -0.33 -2.47 16 21 C -0.05 -0.36 10.04 -39.60 -0.40 -0.75 16 22 C -0.17 -1.26 10.04 -39.56 -0.40 -1.66 16 23 C -0.04 -0.34 9.43 -39.60 -0.37 -0.71 16 24 C -0.22 -2.83 5.38 -104.47 -0.56 -3.39 16 25 C 0.52 7.54 2.99 36.01 0.11 7.64 16 26 F -0.18 -2.34 15.97 2.25 0.04 -2.31 16 27 F -0.17 -2.88 16.95 2.25 0.04 -2.84 16 28 F -0.17 -2.76 16.95 2.25 0.04 -2.72 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.39 6.40 7.96 -40.82 -0.32 6.07 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 0.81 7.57 -51.92 -0.39 0.42 16 36 H 0.07 0.63 6.91 -51.93 -0.36 0.27 16 37 H 0.14 1.15 5.43 -52.49 -0.29 0.86 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.14 1.07 7.16 -52.49 -0.38 0.70 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -32.62 350.35 -6.50 -39.12 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.43 Total: 3.91 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.25 Total: 0.78 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.35 Total: -38.32 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.56 Total: -18.15 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.11 Total: -7.87 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.62 -6.50 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069563582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.442 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds