Wall clock time and date at job start Tue Mar 31 2020 04:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47182 * 2 1 4 4 C 1.50705 * 109.46831 * 240.00666 * 2 1 3 5 5 H 1.08007 * 119.99683 * 240.00153 * 4 2 1 6 6 C 1.37875 * 120.00186 * 60.00098 * 4 2 1 7 7 N 1.31506 * 120.00098 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99699 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47142 * 59.99878 * 8 6 4 10 10 H 1.48500 * 109.46853 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46872 * 299.99776 * 8 6 4 12 12 N 1.46498 * 109.46970 * 120.00778 * 2 1 3 13 13 C 1.34775 * 119.99669 * 274.99168 * 12 2 1 14 14 O 1.21282 * 120.00172 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99952 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46661 * 60.01055 * 15 13 12 17 17 C 1.52994 * 109.47409 * 300.00789 * 15 13 12 18 18 O 1.42900 * 109.47130 * 180.02562 * 15 13 12 19 19 C 1.35894 * 116.99848 * 205.00265 * 18 15 13 20 20 C 1.38754 * 120.05823 * 354.51275 * 19 18 15 21 21 C 1.38127 * 119.94654 * 179.70026 * 20 19 18 22 22 C 1.38288 * 120.05258 * 0.59747 * 21 20 19 23 23 C 1.38243 * 120.11288 * 359.67386 * 22 21 20 24 24 C 1.38170 * 120.05574 * 0.03032 * 23 22 21 25 25 C 1.50700 * 120.02830 * 179.97438 * 24 23 22 26 26 F 1.39900 * 109.47097 * 0.02562 * 25 24 23 27 27 F 1.39901 * 109.46847 * 120.01642 * 25 24 23 28 28 F 1.39895 * 109.47385 * 240.01775 * 25 24 23 29 29 H 1.08995 * 109.46872 * 299.99839 * 1 2 3 30 30 H 1.09004 * 109.46643 * 59.99354 * 1 2 3 31 31 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00159 * 179.97438 * 7 6 4 33 33 H 0.97003 * 120.00164 * 94.99949 * 12 2 1 34 34 H 1.09002 * 109.47425 * 299.99797 * 17 15 13 35 35 H 1.09008 * 109.47185 * 59.99807 * 17 15 13 36 36 H 1.08998 * 109.47230 * 179.97438 * 17 15 13 37 37 H 1.08001 * 120.02749 * 359.97438 * 20 19 18 38 38 H 1.08001 * 119.97598 * 180.29488 * 21 20 19 39 39 H 1.08003 * 119.94546 * 179.69727 * 22 21 20 40 40 H 1.08002 * 119.97398 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8257 -2.5199 -4.0080 10 1 1.8259 -0.4202 -5.2206 11 1 3.8064 -1.1207 -4.0083 12 7 2.0183 -0.6908 1.1961 13 6 2.1472 -0.0185 2.3570 14 8 1.8584 1.1582 2.4117 15 6 2.6489 -0.7292 3.5876 16 1 3.6481 -1.1216 3.3984 17 6 1.7044 -1.8827 3.9312 18 8 2.6967 0.1889 4.6817 19 6 3.5726 -0.0894 5.6827 20 6 4.2871 -1.2787 5.6704 21 6 5.1814 -1.5564 6.6858 22 6 5.3558 -0.6558 7.7206 23 6 4.6410 0.5274 7.7381 24 6 3.7497 0.8126 6.7216 25 6 2.9704 2.1023 6.7416 26 9 3.3182 2.8396 7.8786 27 9 3.2692 2.8455 5.5946 28 9 1.6007 1.8192 6.7702 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7088 1.1616 -3.4843 33 1 2.2490 -1.6320 1.1524 34 1 0.7053 -1.4902 4.1204 35 1 1.6676 -2.5831 3.0967 36 1 2.0676 -2.3969 4.8210 37 1 4.1474 -1.9848 4.8652 38 1 5.7413 -2.4799 6.6742 39 1 6.0519 -0.8769 8.5162 40 1 4.7786 1.2290 8.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069563582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:57 Heat of formation + Delta-G solvation = -219.950262 kcal Electronic energy + Delta-G solvation = -28898.970082 eV Core-core repulsion = 24263.452055 eV Total energy + Delta-G solvation = -4635.518028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.15597 -48.69989 -48.62072 -41.80436 -40.43567 -38.55137 -36.72344 -34.59177 -33.56777 -32.56427 -31.10270 -30.43507 -27.35596 -26.99458 -25.87884 -24.09115 -23.06601 -22.57055 -21.15199 -20.03497 -19.49009 -19.44005 -19.19407 -18.51172 -17.65086 -17.15514 -16.81423 -16.69270 -16.18123 -15.89421 -15.73253 -15.46344 -15.41874 -15.41242 -15.06628 -14.82060 -14.81246 -14.77382 -14.44310 -14.15621 -13.94689 -13.66541 -13.57512 -13.33940 -13.01098 -12.90401 -12.88542 -12.74549 -12.55364 -12.28119 -12.18459 -12.15231 -11.95752 -11.14143 -10.75813 -10.58574 -10.29546 -9.84968 -9.41736 -8.17846 -6.36423 -0.07285 0.27289 1.45418 1.48327 1.53479 1.56838 1.64306 1.72152 2.38936 2.50064 2.64912 2.79312 3.03735 3.12877 3.40196 3.53733 3.74678 3.83593 3.88125 3.94643 4.17205 4.33156 4.40167 4.62078 4.65442 4.73475 4.75484 4.89203 5.05921 5.06765 5.11895 5.24640 5.39012 5.39239 5.55682 5.62177 5.66918 5.86064 6.06572 6.14352 6.70366 6.85752 7.29678 7.46374 8.88544 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.002963 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.929874 B = 9448.168763 C =10158.263698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.547 4.547 5 H 0.080 0.920 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.261 1.261 10 H -0.290 1.290 11 H -0.269 1.269 12 N -0.692 5.692 13 C 0.497 3.503 14 O -0.587 6.587 15 C 0.073 3.927 16 H 0.132 0.868 17 C -0.167 4.167 18 O -0.312 6.312 19 C 0.154 3.846 20 C -0.216 4.216 21 C -0.036 4.036 22 C -0.153 4.153 23 C -0.041 4.041 24 C -0.243 4.243 25 C 0.508 3.492 26 F -0.176 7.176 27 F -0.191 7.191 28 F -0.187 7.187 29 H 0.007 0.993 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.265 0.735 33 H 0.410 0.590 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.321 -10.832 22.039 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.185 1.185 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.343 5.343 13 C 0.283 3.717 14 O -0.467 6.467 15 C 0.014 3.986 16 H 0.149 0.851 17 C -0.224 4.224 18 O -0.225 6.225 19 C 0.107 3.893 20 C -0.235 4.235 21 C -0.054 4.054 22 C -0.170 4.170 23 C -0.058 4.058 24 C -0.245 4.245 25 C 0.454 3.546 26 F -0.157 7.157 27 F -0.172 7.172 28 F -0.169 7.169 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.180 0.820 38 H 0.192 0.808 39 H 0.189 0.811 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.850 -9.680 21.889 25.881 hybrid contribution -0.342 0.368 -1.211 1.311 sum 9.508 -9.312 20.678 24.591 Atomic orbital electron populations 1.21908 0.98245 0.99747 0.99412 1.18377 0.91169 0.91881 0.81722 0.98734 1.21511 1.32790 1.13747 0.90418 0.90179 1.25853 0.94814 0.95548 1.02522 1.70060 1.36964 1.24043 1.24736 0.85348 0.78666 0.78750 0.77270 1.18505 1.21530 1.19433 1.46098 1.65038 1.14311 1.08833 1.20850 0.78418 0.87090 0.85364 1.90704 1.51960 1.18502 1.85582 1.22448 1.03535 0.89399 0.83237 0.85071 1.22353 0.98915 0.95776 1.05390 1.86250 1.56406 1.50644 1.29190 1.19037 0.89189 0.94026 0.87026 1.21668 1.01350 0.96360 1.04084 1.21700 0.93174 0.99825 0.90658 1.21528 1.01444 0.93101 1.00950 1.21179 0.91218 0.98402 0.95046 1.19489 1.08147 0.94973 1.01926 1.18415 0.77786 0.85324 0.73083 1.93128 1.91839 1.79443 1.51316 1.93223 1.93022 1.79306 1.51650 1.93183 1.33945 1.93645 1.96098 0.97381 0.91491 0.93481 0.92554 0.75384 0.92601 0.87641 0.87946 0.81972 0.80777 0.81124 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.07 2.56 44.25 0.11 14.19 16 3 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 4 C -0.55 -28.25 8.73 25.60 0.22 -28.02 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 8 Si 0.98 41.13 29.54 68.60 2.03 43.16 16 9 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 12 N -0.69 -27.77 4.96 -446.08 -2.21 -29.98 16 13 C 0.50 20.39 7.20 87.66 0.63 21.02 16 14 O -0.59 -31.43 16.16 16.00 0.26 -31.17 16 15 C 0.07 2.04 2.64 29.85 0.08 2.12 16 16 H 0.13 2.71 6.31 -2.39 -0.02 2.69 16 17 C -0.17 -3.37 9.07 71.98 0.65 -2.72 16 18 O -0.31 -10.35 8.24 -73.32 -0.60 -10.96 16 19 C 0.15 3.93 6.48 22.51 0.15 4.08 16 20 C -0.22 -3.49 8.25 22.37 0.18 -3.31 16 21 C -0.04 -0.37 10.04 22.26 0.22 -0.14 16 22 C -0.15 -1.61 10.04 22.28 0.22 -1.39 16 23 C -0.04 -0.68 9.43 22.25 0.21 -0.47 16 24 C -0.24 -6.14 5.38 -19.77 -0.11 -6.25 16 25 C 0.51 15.56 2.99 71.24 0.21 15.78 16 26 F -0.18 -4.58 15.97 44.97 0.72 -3.87 16 27 F -0.19 -7.10 16.95 44.97 0.76 -6.34 16 28 F -0.19 -6.39 16.95 44.97 0.76 -5.63 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.41 12.78 7.96 -92.71 -0.74 12.05 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.66 7.57 -2.38 -0.02 1.64 16 36 H 0.10 1.44 6.91 -2.39 -0.02 1.42 16 37 H 0.16 1.84 5.43 -2.91 -0.02 1.83 16 38 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 39 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.16 2.03 7.16 -2.91 -0.02 2.01 16 Total: -1.00 -78.09 350.35 6.23 -71.86 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.37 Total: 15.84 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 3.91 Total: 9.81 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.97 Total: -82.70 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.35 Total: -42.13 kcal Atomic # 9 Polarization: -18.08 SS G_CDS: 2.24 Total: -15.84 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -78.09 6.23 -71.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069563582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.090 kcal (2) G-P(sol) polarization free energy of solvation -78.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds