Wall clock time and date at job start Tue Mar 31 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34683 * 117.00337 * 2 1 4 4 O 1.21444 * 120.00087 * 359.97438 * 3 2 1 5 5 C 1.47926 * 120.00014 * 179.97438 * 3 2 1 6 6 C 1.39609 * 120.00714 * 179.97438 * 5 3 2 7 7 C 1.37808 * 119.99564 * 180.02562 * 6 5 3 8 8 C 1.39555 * 120.00823 * 0.02562 * 7 6 5 9 9 C 1.48047 * 119.99764 * 179.97438 * 8 7 6 10 10 O 1.21525 * 119.99798 * 50.96210 * 9 8 7 11 11 N 1.34780 * 119.99871 * 230.96383 * 9 8 7 12 12 C 1.46494 * 119.99619 * 164.66287 * 11 9 8 13 13 C 1.50703 * 109.47403 * 270.00052 * 12 11 9 14 14 H 1.07999 * 119.99629 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99885 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00320 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99799 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46895 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46880 * 119.99885 * 17 15 13 20 20 H 1.48497 * 109.47416 * 240.00053 * 17 15 13 21 21 C 1.46498 * 119.99891 * 344.67014 * 11 9 8 22 22 H 1.09003 * 109.47125 * 162.93179 * 21 11 9 23 23 C 1.53004 * 109.46867 * 282.92248 * 21 11 9 24 24 C 1.52996 * 109.47410 * 42.92301 * 21 11 9 25 25 C 1.53006 * 117.49714 * 200.58879 * 24 21 11 26 26 C 1.53008 * 60.03017 * 252.50111 * 25 24 21 27 27 C 1.39559 * 120.00737 * 0.23395 * 8 7 6 28 28 C 1.37809 * 120.00513 * 359.48615 * 27 8 7 29 29 H 1.09001 * 109.46955 * 300.00756 * 1 2 3 30 30 H 1.09004 * 109.46547 * 59.99822 * 1 2 3 31 31 H 1.08996 * 109.47862 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00166 * 0.02562 * 6 5 3 33 33 H 1.07998 * 119.99879 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47564 * 30.00545 * 12 11 9 35 35 H 1.09005 * 109.46585 * 150.00320 * 12 11 9 36 36 H 0.96996 * 120.00197 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.47039 * 137.57200 * 23 21 11 38 38 H 1.09003 * 109.47040 * 257.57295 * 23 21 11 39 39 H 1.09003 * 109.46751 * 17.57043 * 23 21 11 40 40 H 1.08997 * 115.56398 * 346.27754 * 24 21 11 41 41 H 1.08998 * 117.49949 * 0.02562 * 25 24 21 42 42 H 1.09000 * 117.49778 * 145.00154 * 25 24 21 43 43 H 1.08992 * 117.49814 * 107.50299 * 26 25 24 44 44 H 1.08996 * 117.49635 * 252.52414 * 26 25 24 45 45 H 1.08004 * 119.99752 * 179.74519 * 27 8 7 46 46 H 1.08008 * 120.00276 * 180.25449 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2186 -0.0005 5 6 3.5407 1.2773 0.0006 6 6 4.1748 2.5211 0.0000 7 6 5.5510 2.5929 0.0000 8 6 6.3109 1.4224 0.0000 9 6 7.7894 1.4998 -0.0005 10 8 8.3618 2.1937 0.8166 11 7 8.5004 0.8007 -0.9073 12 6 9.9113 1.1213 -1.1367 13 6 10.0203 2.1586 -2.2244 14 1 9.1279 2.5406 -2.6977 15 6 11.2595 2.6193 -2.6160 16 7 12.3462 2.1538 -2.0400 17 14 11.3946 3.9047 -3.9647 18 1 10.0359 4.2617 -4.4461 19 1 12.0635 5.1169 -3.4279 20 1 12.1918 3.3576 -5.0918 21 6 7.8622 -0.2797 -1.6635 22 1 8.4699 -0.5209 -2.5356 23 6 7.7332 -1.5177 -0.7737 24 6 6.4719 0.1684 -2.1185 25 6 5.4637 -0.9219 -2.4868 26 6 6.0983 -0.0655 -3.5844 27 6 5.6774 0.1789 -0.0049 28 6 4.3012 0.1066 0.0009 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 3.5867 3.4270 -0.0004 33 1 6.0415 3.5551 0.0000 34 1 10.3495 1.5108 -0.2179 35 1 10.4440 0.2198 -1.4397 36 1 13.2180 2.4777 -2.3157 37 1 6.7523 -1.9698 -0.9202 38 1 8.5081 -2.2374 -1.0380 39 1 7.8475 -1.2279 0.2708 40 1 6.0873 1.0682 -1.6386 41 1 5.7907 -1.9584 -2.4044 42 1 4.4157 -0.7395 -2.2488 43 1 6.8429 -0.5386 -4.2245 44 1 5.4679 0.6806 -4.0682 45 1 6.2656 -0.7268 -0.0091 46 1 3.8109 -0.8558 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069596645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:13 Heat of formation + Delta-G solvation = -9.761933 kcal Electronic energy + Delta-G solvation = -29459.214734 eV Core-core repulsion = 25510.500991 eV Total energy + Delta-G solvation = -3948.713743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43516 -40.41905 -37.98567 -37.49647 -36.56055 -34.63580 -32.87554 -31.79727 -31.24767 -30.06585 -28.21769 -27.22808 -24.86905 -24.38332 -23.09786 -22.56351 -22.14576 -21.13430 -20.29950 -18.86100 -18.17567 -17.36578 -16.92059 -16.55034 -16.51496 -15.79272 -15.38102 -15.10572 -14.95978 -14.65478 -14.28777 -14.13732 -13.81895 -13.63462 -13.37039 -13.09831 -12.86151 -12.68815 -12.51563 -12.34275 -12.19693 -11.89497 -11.72308 -11.31155 -11.22517 -11.13834 -11.05799 -10.88431 -10.78496 -10.66741 -10.55690 -10.39305 -10.10130 -9.94595 -9.65379 -9.19770 -8.91449 -8.49487 -8.36642 -7.76632 -6.10137 -4.15602 0.44073 1.32435 2.29126 2.45819 3.18165 3.26395 3.34651 3.38571 3.58054 3.79493 3.96502 4.39301 4.48216 4.63125 4.75450 4.81868 4.85780 4.90164 4.91002 5.07835 5.15579 5.21198 5.23525 5.24936 5.34485 5.38978 5.40145 5.59722 5.68184 5.71263 5.79686 5.93528 5.99436 6.01040 6.08160 6.13993 6.23249 6.26428 6.27225 6.37869 6.39285 6.69877 6.98174 7.35708 7.45529 7.53760 7.86412 8.15486 8.24976 8.75561 8.93795 9.50133 10.97790 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.003454 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.720333 B = 8104.529582 C = 8370.483164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.509 6.509 5 C -0.126 4.126 6 C -0.060 4.060 7 C -0.100 4.100 8 C -0.070 4.070 9 C 0.549 3.451 10 O -0.528 6.528 11 N -0.584 5.584 12 C 0.245 3.755 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.168 3.832 22 H 0.098 0.902 23 C -0.183 4.183 24 C -0.192 4.192 25 C -0.179 4.179 26 C -0.174 4.174 27 C -0.107 4.107 28 C -0.082 4.082 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.165 0.835 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.807 -9.838 1.347 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.398 6.398 5 C -0.127 4.127 6 C -0.079 4.079 7 C -0.118 4.118 8 C -0.074 4.074 9 C 0.335 3.665 10 O -0.405 6.405 11 N -0.314 5.314 12 C 0.126 3.874 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.063 3.937 22 H 0.116 0.884 23 C -0.241 4.241 24 C -0.209 4.209 25 C -0.216 4.216 26 C -0.211 4.211 27 C -0.124 4.124 28 C -0.100 4.100 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.182 0.818 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.474 -9.170 1.766 21.597 hybrid contribution -0.074 0.833 -0.979 1.288 sum -19.548 -8.337 0.786 21.266 Atomic orbital electron populations 1.23274 0.76094 1.03725 1.02621 1.86540 1.23443 1.32745 1.84377 1.21354 0.89243 0.81332 0.72461 1.90820 1.66848 1.36080 1.46023 1.19078 0.88501 0.95166 1.09944 1.21114 0.94106 0.96734 0.95918 1.21120 0.92703 0.98479 0.99537 1.20436 0.95324 0.94343 0.97252 1.18140 0.85877 0.80669 0.81796 1.90767 1.71262 1.41148 1.37327 1.48214 1.13706 1.32459 1.37058 1.19398 0.73583 0.96415 0.97981 1.21490 0.92738 1.23141 1.19546 0.92185 1.24925 0.95555 0.96652 0.96830 1.69936 0.97890 1.43356 1.41953 0.86456 0.78169 0.81420 0.81495 1.19722 1.20846 1.20921 1.20603 0.91635 0.86507 0.94973 0.88391 1.22769 1.02362 0.98363 1.00590 1.24102 0.95965 1.02145 0.98717 1.23279 0.97930 0.96249 1.04141 1.23128 1.03379 1.02672 0.91886 1.22357 0.95107 0.99007 0.95950 1.21235 0.93358 0.97763 0.97644 0.91855 0.91850 0.87970 0.84310 0.84174 0.93307 0.94720 0.92686 0.90544 0.91514 0.91463 0.84590 0.88272 0.88674 0.88753 0.89225 0.81846 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.61 9.80 -40.45 -0.40 -4.01 16 3 C 0.51 6.34 7.90 34.70 0.27 6.61 16 4 O -0.51 -7.44 16.12 -19.22 -0.31 -7.75 16 5 C -0.13 -1.55 5.88 -104.91 -0.62 -2.16 16 6 C -0.06 -0.79 9.58 -39.23 -0.38 -1.17 16 7 C -0.10 -1.49 9.34 -39.25 -0.37 -1.86 16 8 C -0.07 -1.12 3.25 -104.89 -0.34 -1.46 16 9 C 0.55 11.27 6.66 -12.24 -0.08 11.19 16 10 O -0.53 -13.02 16.62 5.34 0.09 -12.93 16 11 N -0.58 -11.85 2.33 -168.50 -0.39 -12.24 16 12 C 0.24 6.16 5.22 -5.20 -0.03 6.13 16 13 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 17 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.17 2.61 2.95 -67.93 -0.20 2.41 16 22 H 0.10 1.61 7.77 -51.93 -0.40 1.21 16 23 C -0.18 -2.21 7.88 37.16 0.29 -1.92 16 24 C -0.19 -2.62 3.23 -90.58 -0.29 -2.91 16 25 C -0.18 -1.84 7.58 -26.72 -0.20 -2.04 16 26 C -0.17 -2.15 10.18 -26.69 -0.27 -2.42 16 27 C -0.11 -1.35 5.18 -39.25 -0.20 -1.55 16 28 C -0.08 -0.90 7.40 -39.23 -0.29 -1.19 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 33 H 0.14 2.13 8.06 -52.49 -0.42 1.70 16 34 H 0.05 1.39 7.29 -51.93 -0.38 1.01 16 35 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.08 0.70 4.52 -51.93 -0.23 0.47 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.88 6.85 -51.93 -0.36 0.52 16 40 H 0.14 2.07 3.39 -76.23 -0.26 1.81 16 41 H 0.10 0.86 6.65 -51.93 -0.35 0.51 16 42 H 0.09 0.92 6.63 -51.93 -0.34 0.57 16 43 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.16 1.88 2.46 -52.48 -0.13 1.75 16 46 H 0.14 1.20 7.60 -52.48 -0.40 0.80 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -32.96 368.47 -7.96 -40.93 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.17 Total: 3.40 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.05 Total: -4.20 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.34 Total: -37.39 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.62 Total: -24.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.96 -7.96 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069596645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.166 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds