Wall clock time and date at job start Tue Mar 31 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34683 * 117.00337 * 2 1 4 4 O 1.21444 * 120.00087 * 359.97438 * 3 2 1 5 5 C 1.47926 * 120.00014 * 179.97438 * 3 2 1 6 6 C 1.39609 * 120.00714 * 179.97438 * 5 3 2 7 7 C 1.37808 * 119.99564 * 180.02562 * 6 5 3 8 8 C 1.39555 * 120.00823 * 0.02562 * 7 6 5 9 9 C 1.48047 * 119.99764 * 179.97438 * 8 7 6 10 10 O 1.21525 * 119.99798 * 50.96210 * 9 8 7 11 11 N 1.34780 * 119.99871 * 230.96383 * 9 8 7 12 12 C 1.46494 * 119.99619 * 164.66287 * 11 9 8 13 13 C 1.50703 * 109.47403 * 270.00052 * 12 11 9 14 14 H 1.07999 * 119.99629 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99885 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00320 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99799 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46895 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46880 * 119.99885 * 17 15 13 20 20 H 1.48497 * 109.47416 * 240.00053 * 17 15 13 21 21 C 1.46498 * 119.99891 * 344.67014 * 11 9 8 22 22 H 1.09003 * 109.47125 * 162.93179 * 21 11 9 23 23 C 1.53004 * 109.46867 * 282.92248 * 21 11 9 24 24 C 1.52996 * 109.47410 * 42.92301 * 21 11 9 25 25 C 1.53006 * 117.49714 * 200.58879 * 24 21 11 26 26 C 1.53008 * 60.03017 * 252.50111 * 25 24 21 27 27 C 1.39559 * 120.00737 * 0.23395 * 8 7 6 28 28 C 1.37809 * 120.00513 * 359.48615 * 27 8 7 29 29 H 1.09001 * 109.46955 * 300.00756 * 1 2 3 30 30 H 1.09004 * 109.46547 * 59.99822 * 1 2 3 31 31 H 1.08996 * 109.47862 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00166 * 0.02562 * 6 5 3 33 33 H 1.07998 * 119.99879 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47564 * 30.00545 * 12 11 9 35 35 H 1.09005 * 109.46585 * 150.00320 * 12 11 9 36 36 H 0.96996 * 120.00197 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.47039 * 137.57200 * 23 21 11 38 38 H 1.09003 * 109.47040 * 257.57295 * 23 21 11 39 39 H 1.09003 * 109.46751 * 17.57043 * 23 21 11 40 40 H 1.08997 * 115.56398 * 346.27754 * 24 21 11 41 41 H 1.08998 * 117.49949 * 0.02562 * 25 24 21 42 42 H 1.09000 * 117.49778 * 145.00154 * 25 24 21 43 43 H 1.08992 * 117.49814 * 107.50299 * 26 25 24 44 44 H 1.08996 * 117.49635 * 252.52414 * 26 25 24 45 45 H 1.08004 * 119.99752 * 179.74519 * 27 8 7 46 46 H 1.08008 * 120.00276 * 180.25449 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2186 -0.0005 5 6 3.5407 1.2773 0.0006 6 6 4.1748 2.5211 0.0000 7 6 5.5510 2.5929 0.0000 8 6 6.3109 1.4224 0.0000 9 6 7.7894 1.4998 -0.0005 10 8 8.3618 2.1937 0.8166 11 7 8.5004 0.8007 -0.9073 12 6 9.9113 1.1213 -1.1367 13 6 10.0203 2.1586 -2.2244 14 1 9.1279 2.5406 -2.6977 15 6 11.2595 2.6193 -2.6160 16 7 12.3462 2.1538 -2.0400 17 14 11.3946 3.9047 -3.9647 18 1 10.0359 4.2617 -4.4461 19 1 12.0635 5.1169 -3.4279 20 1 12.1918 3.3576 -5.0918 21 6 7.8622 -0.2797 -1.6635 22 1 8.4699 -0.5209 -2.5356 23 6 7.7332 -1.5177 -0.7737 24 6 6.4719 0.1684 -2.1185 25 6 5.4637 -0.9219 -2.4868 26 6 6.0983 -0.0655 -3.5844 27 6 5.6774 0.1789 -0.0049 28 6 4.3012 0.1066 0.0009 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 3.5867 3.4270 -0.0004 33 1 6.0415 3.5551 0.0000 34 1 10.3495 1.5108 -0.2179 35 1 10.4440 0.2198 -1.4397 36 1 13.2180 2.4777 -2.3157 37 1 6.7523 -1.9698 -0.9202 38 1 8.5081 -2.2374 -1.0380 39 1 7.8475 -1.2279 0.2708 40 1 6.0873 1.0682 -1.6386 41 1 5.7907 -1.9584 -2.4044 42 1 4.4157 -0.7395 -2.2488 43 1 6.8429 -0.5386 -4.2245 44 1 5.4679 0.6806 -4.0682 45 1 6.2656 -0.7268 -0.0091 46 1 3.8109 -0.8558 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069596645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:12 Heat of formation + Delta-G solvation = -28.719136 kcal Electronic energy + Delta-G solvation = -29460.036780 eV Core-core repulsion = 25510.500991 eV Total energy + Delta-G solvation = -3949.535789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62354 -41.38680 -39.39550 -38.64509 -37.47089 -36.21439 -34.78148 -33.02726 -32.36479 -31.33144 -29.41818 -28.54918 -26.24235 -25.53492 -24.53783 -23.85893 -23.06638 -22.20551 -21.50587 -20.18070 -19.14251 -18.66189 -18.42900 -17.98906 -17.37948 -17.35664 -16.55795 -16.47465 -16.30153 -16.01538 -15.55320 -15.24739 -15.00542 -14.58476 -14.50378 -14.37481 -14.18358 -14.06236 -13.67785 -13.58811 -13.45793 -13.16873 -12.97222 -12.82558 -12.74403 -12.57284 -12.28257 -12.18042 -11.97914 -11.79943 -11.78826 -11.71998 -11.55968 -11.28658 -10.96871 -10.81508 -10.66946 -9.95900 -9.50686 -9.40935 -8.25232 -6.40112 -0.62966 0.30284 1.22927 1.34584 1.36833 1.48322 1.63780 1.71764 2.17514 2.37598 2.63006 2.98388 3.04559 3.32840 3.64442 3.72936 3.85628 3.86216 4.10869 4.17468 4.20932 4.24857 4.31215 4.36098 4.39134 4.39392 4.53699 4.60929 4.75796 4.80841 4.86641 4.91642 4.96139 4.99391 5.06555 5.10809 5.16408 5.19648 5.25532 5.29436 5.32817 5.36430 5.38226 5.56173 5.66566 5.81466 6.02211 6.61150 6.64228 6.70008 7.16858 7.34024 8.82020 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.003454 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.720333 B = 8104.529582 C = 8370.483164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.516 3.484 4 O -0.535 6.535 5 C -0.120 4.120 6 C -0.060 4.060 7 C -0.111 4.111 8 C -0.087 4.087 9 C 0.543 3.457 10 O -0.588 6.588 11 N -0.587 5.587 12 C 0.260 3.740 13 C -0.543 4.543 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.965 3.035 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.161 3.839 22 H 0.082 0.918 23 C -0.178 4.178 24 C -0.217 4.217 25 C -0.140 4.140 26 C -0.185 4.185 27 C -0.092 4.092 28 C -0.061 4.061 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.122 0.878 34 H 0.003 0.997 35 H 0.027 0.973 36 H 0.268 0.732 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.179 0.821 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.136 -12.378 0.142 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.362 3.638 4 O -0.427 6.427 5 C -0.121 4.121 6 C -0.079 4.079 7 C -0.130 4.130 8 C -0.090 4.090 9 C 0.332 3.668 10 O -0.469 6.469 11 N -0.316 5.316 12 C 0.140 3.860 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.193 1.193 21 C 0.058 3.942 22 H 0.100 0.900 23 C -0.235 4.235 24 C -0.234 4.234 25 C -0.176 4.176 26 C -0.222 4.222 27 C -0.109 4.109 28 C -0.079 4.079 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.140 0.860 34 H 0.021 0.979 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.196 0.804 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -22.842 -11.765 0.536 25.700 hybrid contribution 0.890 1.581 -0.600 1.911 sum -21.953 -10.184 -0.065 24.200 Atomic orbital electron populations 1.23620 0.74169 1.06078 1.02584 1.86519 1.25206 1.31040 1.83632 1.21257 0.88997 0.81690 0.71857 1.90821 1.67354 1.37199 1.47298 1.19213 0.89039 0.95158 1.08736 1.21088 0.92993 0.97857 0.95928 1.21002 0.93613 0.97659 1.00719 1.20034 0.91977 0.96385 1.00625 1.18888 0.88038 0.79301 0.80599 1.90713 1.72986 1.43530 1.39675 1.48179 1.12097 1.33775 1.37565 1.18836 0.76644 0.95390 0.95161 1.21708 0.92701 1.23805 1.19991 0.92898 1.25801 0.95155 0.98651 0.99162 1.70046 0.98456 1.44631 1.43350 0.85410 0.78347 0.78551 0.78783 1.19265 1.20710 1.19342 1.20892 0.92300 0.86291 0.94713 0.89966 1.22734 1.05059 0.96719 0.98950 1.23936 0.95822 1.03654 1.00028 1.23440 0.97696 0.96348 1.00163 1.23185 1.03877 1.03648 0.91457 1.22440 0.95919 0.97778 0.94788 1.21564 0.92153 0.98899 0.95259 0.91995 0.91908 0.84427 0.83791 0.85966 0.97894 0.95457 0.92318 0.86453 0.90721 0.92553 0.85992 0.85533 0.86905 0.88889 0.89372 0.80442 0.80215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.54 9.80 -55.92 -0.55 -6.08 16 3 C 0.52 11.16 7.90 70.39 0.56 11.72 16 4 O -0.54 -14.57 16.12 20.02 0.32 -14.25 16 5 C -0.12 -2.62 5.88 -20.05 -0.12 -2.73 16 6 C -0.06 -1.54 9.58 22.50 0.22 -1.33 16 7 C -0.11 -3.43 9.34 22.49 0.21 -3.22 16 8 C -0.09 -2.82 3.25 -20.04 -0.07 -2.88 16 9 C 0.54 23.67 6.66 86.85 0.58 24.25 16 10 O -0.59 -31.49 16.62 -3.79 -0.06 -31.55 16 11 N -0.59 -25.09 2.33 -805.31 -1.88 -26.97 16 12 C 0.26 14.03 5.22 85.64 0.45 14.48 16 13 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 15 C 0.01 0.67 5.46 84.65 0.46 1.13 16 16 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 17 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 C 0.16 4.97 2.95 44.99 0.13 5.10 16 22 H 0.08 2.75 7.77 -2.39 -0.02 2.73 16 23 C -0.18 -3.89 7.88 71.98 0.57 -3.32 16 24 C -0.22 -5.55 3.23 -10.77 -0.03 -5.58 16 25 C -0.14 -2.21 7.58 30.60 0.23 -1.97 16 26 C -0.18 -4.15 10.18 30.62 0.31 -3.83 16 27 C -0.09 -2.09 5.18 22.49 0.12 -1.98 16 28 C -0.06 -1.08 7.40 22.50 0.17 -0.91 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.14 3.47 7.64 -2.91 -0.02 3.45 16 33 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.00 0.18 7.29 -2.39 -0.02 0.17 16 35 H 0.03 1.48 8.07 -2.38 -0.02 1.46 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 37 H 0.12 1.56 4.52 -2.39 -0.01 1.55 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.40 6.85 -2.39 -0.02 1.38 16 40 H 0.12 3.62 3.39 -25.22 -0.09 3.53 16 41 H 0.13 1.37 6.65 -2.39 -0.02 1.35 16 42 H 0.11 1.46 6.63 -2.39 -0.02 1.44 16 43 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.18 3.49 2.46 -2.91 -0.01 3.48 16 46 H 0.18 1.83 7.60 -2.91 -0.02 1.80 16 Total: -1.00 -77.92 368.47 6.30 -71.62 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.94 Total: 16.19 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.22 Total: -0.57 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -1.59 Total: -82.25 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.29 Total: -51.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -77.92 6.30 -71.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069596645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.903 kcal (2) G-P(sol) polarization free energy of solvation -77.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds