Wall clock time and date at job start Tue Mar 31 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34688 * 117.00416 * 2 1 4 4 O 1.21438 * 119.99696 * 359.97438 * 3 2 1 5 5 C 1.47922 * 119.99926 * 179.97438 * 3 2 1 6 6 C 1.39603 * 120.00469 * 179.97438 * 5 3 2 7 7 C 1.37812 * 119.99564 * 180.02562 * 6 5 3 8 8 C 1.39556 * 120.00553 * 0.02562 * 7 6 5 9 9 C 1.48041 * 119.99440 * 179.97438 * 8 7 6 10 10 O 1.21530 * 119.99972 * 27.23879 * 9 8 7 11 11 N 1.34783 * 120.00252 * 207.24226 * 9 8 7 12 12 C 1.46493 * 119.99754 * 0.79475 * 11 9 8 13 13 C 1.50696 * 109.47290 * 258.33223 * 12 11 9 14 14 H 1.07998 * 119.99955 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00211 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00001 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47323 * 90.00287 * 17 15 13 19 19 H 1.48499 * 109.46972 * 210.00269 * 17 15 13 20 20 H 1.48499 * 109.47227 * 330.00267 * 17 15 13 21 21 C 1.46499 * 120.00036 * 180.79794 * 11 9 8 22 22 H 1.08997 * 109.47418 * 354.31878 * 21 11 9 23 23 C 1.53006 * 109.46877 * 234.32143 * 21 11 9 24 24 C 1.52996 * 109.47180 * 114.32327 * 21 11 9 25 25 C 1.53003 * 117.49871 * 248.61832 * 24 21 11 26 26 C 1.53002 * 117.49927 * 179.97438 * 24 21 11 27 27 C 1.39553 * 120.01211 * 0.27487 * 8 7 6 28 28 C 1.37820 * 119.99998 * 359.44455 * 27 8 7 29 29 H 1.09003 * 109.47295 * 60.00389 * 1 2 3 30 30 H 1.08998 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47037 * 300.00380 * 1 2 3 32 32 H 1.08001 * 120.00048 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.99497 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47270 * 18.33131 * 12 11 9 35 35 H 1.08997 * 109.47043 * 138.32645 * 12 11 9 36 36 H 0.97002 * 120.00292 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46880 * 300.00064 * 23 21 11 38 38 H 1.08999 * 109.47150 * 179.97438 * 23 21 11 39 39 H 1.09006 * 109.46606 * 60.00102 * 23 21 11 40 40 H 1.08998 * 115.54907 * 34.32966 * 24 21 11 41 41 H 1.08997 * 117.49890 * 0.02562 * 25 24 21 42 42 H 1.08996 * 117.49627 * 145.01913 * 25 24 21 43 43 H 1.08993 * 117.50305 * 214.97683 * 26 24 21 44 44 H 1.09000 * 117.49431 * 0.02562 * 26 24 21 45 45 H 1.07997 * 119.99981 * 179.72956 * 27 8 7 46 46 H 1.08004 * 120.00019 * 180.25548 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2185 -0.0005 5 6 3.5407 1.2773 0.0006 6 6 4.1747 2.5211 0.0000 7 6 5.5509 2.5929 0.0000 8 6 6.3108 1.4224 0.0000 9 6 7.7892 1.4998 -0.0005 10 8 8.3473 2.4661 0.4807 11 7 8.5163 0.4985 -0.5349 12 6 7.8433 -0.6582 -1.1307 13 6 7.8852 -1.8155 -0.1664 14 1 8.3656 -1.7009 0.7941 15 6 7.3113 -3.0209 -0.5107 16 7 7.3483 -4.0310 0.3306 17 14 6.4811 -3.2193 -2.1723 18 1 7.4754 -3.6911 -3.1693 19 1 5.3822 -4.2119 -2.0612 20 1 5.9257 -1.9126 -2.6073 21 6 9.9796 0.5671 -0.5197 22 1 10.2941 1.5359 -0.1319 23 6 10.5132 0.3898 -1.9427 24 6 10.5330 -0.5442 0.3745 25 6 11.2028 -0.1282 1.6857 26 6 12.0528 -0.6419 0.5213 27 6 5.6774 0.1789 -0.0058 28 6 4.3011 0.1066 0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.5866 3.4270 -0.0004 33 1 6.0414 3.5551 -0.0008 34 1 6.8059 -0.4032 -1.3473 35 1 8.3495 -0.9368 -2.0549 36 1 6.9441 -4.8790 0.0885 37 1 10.1988 -0.5791 -2.3306 38 1 11.6019 0.4413 -1.9316 39 1 10.1189 1.1816 -2.5798 40 1 9.9670 -1.4757 0.3714 41 1 11.2488 0.9371 1.9115 42 1 11.0773 -0.7860 2.5457 43 1 12.4865 -1.6374 0.6157 44 1 12.6584 0.0859 -0.0188 45 1 6.2656 -0.7268 -0.0102 46 1 3.8108 -0.8557 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069596651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:16 Heat of formation + Delta-G solvation = -38.805253 kcal Electronic energy + Delta-G solvation = -29048.205018 eV Core-core repulsion = 25098.231862 eV Total energy + Delta-G solvation = -3949.973156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61191 -39.98165 -38.14903 -36.99626 -36.39362 -35.13737 -32.87231 -31.78932 -30.98858 -29.70404 -28.26520 -27.78620 -24.91200 -23.78595 -22.53389 -22.34849 -21.80513 -21.09573 -19.93790 -18.84195 -17.87414 -17.19531 -17.08177 -16.81122 -16.36474 -16.10111 -14.97449 -14.81725 -14.56767 -14.43058 -14.03184 -13.80570 -13.70885 -13.49780 -13.35496 -13.25019 -12.85758 -12.57778 -12.35888 -12.23190 -12.07820 -11.88782 -11.69029 -11.56759 -11.17893 -10.97433 -10.93531 -10.86955 -10.68327 -10.57319 -10.28578 -10.12488 -9.97873 -9.44292 -9.41854 -9.24344 -8.96537 -8.83118 -8.53078 -7.88947 -6.43287 -4.46778 0.61389 1.61921 2.43960 2.66402 3.06024 3.14752 3.17929 3.33970 3.58808 4.08557 4.10942 4.36339 4.71870 4.83369 4.99911 5.03456 5.07390 5.10025 5.16214 5.19142 5.39493 5.42313 5.56295 5.58835 5.66018 5.73688 5.78682 5.89622 5.99994 6.02296 6.09206 6.19456 6.28156 6.30317 6.33968 6.42751 6.44605 6.49665 6.56675 6.61839 6.69565 6.75015 7.05091 7.12646 7.20806 7.32568 7.72153 7.92755 8.23490 8.62399 8.73047 9.12864 10.66034 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011991 B = 0.004370 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.492052 B = 6406.357877 C = 7983.266827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.512 3.488 4 O -0.512 6.512 5 C -0.117 4.117 6 C -0.078 4.078 7 C -0.082 4.082 8 C -0.094 4.094 9 C 0.556 3.444 10 O -0.561 6.561 11 N -0.572 5.572 12 C 0.178 3.822 13 C -0.550 4.550 14 H 0.095 0.905 15 C 0.085 3.915 16 N -0.873 5.873 17 Si 0.858 3.142 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.258 1.258 21 C 0.175 3.825 22 H 0.088 0.912 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.182 4.182 26 C -0.183 4.183 27 C -0.116 4.116 28 C -0.077 4.077 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.271 0.729 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.153 0.847 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.208 0.792 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 5.377 -3.124 7.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.357 3.643 4 O -0.401 6.401 5 C -0.118 4.118 6 C -0.096 4.096 7 C -0.101 4.101 8 C -0.097 4.097 9 C 0.344 3.656 10 O -0.442 6.442 11 N -0.301 5.301 12 C 0.057 3.943 13 C -0.587 4.587 14 H 0.113 0.887 15 C -0.122 4.122 16 N -0.508 5.508 17 Si 0.684 3.316 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.182 1.182 21 C 0.072 3.928 22 H 0.106 0.894 23 C -0.215 4.215 24 C -0.183 4.183 25 C -0.219 4.219 26 C -0.221 4.221 27 C -0.133 4.133 28 C -0.096 4.096 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.223 0.777 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.081 5.934 -2.866 7.751 hybrid contribution -0.745 -0.360 -0.788 1.142 sum -4.826 5.574 -3.653 8.229 Atomic orbital electron populations 1.23273 0.76201 1.03773 1.02456 1.86589 1.23370 1.32650 1.84153 1.21405 0.89320 0.81296 0.72245 1.90790 1.66916 1.36087 1.46345 1.19271 0.88512 0.95477 1.08542 1.21026 0.94162 0.96426 0.98021 1.21127 0.92660 0.98342 0.97988 1.20292 0.93752 0.94330 1.01293 1.18281 0.86652 0.82427 0.78200 1.90682 1.72569 1.33177 1.47756 1.47774 1.05868 1.20031 1.56381 1.20639 0.94429 0.84404 0.94842 1.21412 1.38743 0.94281 1.04297 0.88691 1.24921 0.95149 0.95487 0.96638 1.69868 1.42686 1.02801 1.35428 0.87096 0.80300 0.79446 0.84788 1.19559 1.20411 1.18204 1.20418 0.79326 0.98157 0.94942 0.89389 1.22074 1.00681 1.02613 0.96129 1.23382 0.94147 1.03369 0.97389 1.22915 1.05301 1.00901 0.92765 1.22857 0.94139 1.01937 1.03126 1.23669 0.95351 1.01521 0.92716 1.21555 0.94103 0.97672 0.96242 0.91923 0.87950 0.91880 0.84560 0.84498 0.92506 0.94992 0.91872 0.91302 0.91865 0.92941 0.82924 0.89524 0.89329 0.89207 0.89653 0.77651 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.87 9.80 -40.46 -0.40 -5.27 16 3 C 0.51 7.93 7.90 34.70 0.27 8.21 16 4 O -0.51 -8.57 16.12 -19.22 -0.31 -8.88 16 5 C -0.12 -1.86 5.88 -104.92 -0.62 -2.48 16 6 C -0.08 -1.19 9.58 -39.23 -0.38 -1.56 16 7 C -0.08 -1.33 9.57 -39.25 -0.38 -1.71 16 8 C -0.09 -1.73 5.55 -104.90 -0.58 -2.32 16 9 C 0.56 11.22 7.49 -12.24 -0.09 11.12 16 10 O -0.56 -12.22 15.98 5.34 0.09 -12.13 16 11 N -0.57 -11.15 2.47 -168.51 -0.42 -11.57 16 12 C 0.18 3.58 3.50 -5.20 -0.02 3.57 16 13 C -0.55 -12.61 6.02 -34.44 -0.21 -12.82 16 14 H 0.10 2.43 6.28 -52.49 -0.33 2.10 16 15 C 0.08 2.03 5.36 -17.82 -0.10 1.93 16 16 N -0.87 -22.68 13.96 55.43 0.77 -21.91 16 17 Si 0.86 17.88 27.47 -169.99 -4.67 13.21 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 20 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 21 C 0.17 3.10 2.87 -67.93 -0.19 2.91 16 22 H 0.09 1.62 6.67 -51.93 -0.35 1.27 16 23 C -0.16 -2.38 8.84 37.16 0.33 -2.06 16 24 C -0.16 -2.94 4.86 -90.62 -0.44 -3.38 16 25 C -0.18 -2.98 10.18 -26.71 -0.27 -3.25 16 26 C -0.18 -2.72 9.74 -26.71 -0.26 -2.98 16 27 C -0.12 -2.16 7.44 -39.24 -0.29 -2.45 16 28 C -0.08 -1.30 9.60 -39.23 -0.38 -1.68 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.14 1.84 7.64 -52.49 -0.40 1.44 16 33 H 0.14 2.04 7.87 -52.49 -0.41 1.63 16 34 H 0.06 1.15 3.35 -51.93 -0.17 0.98 16 35 H 0.03 0.63 5.77 -51.93 -0.30 0.33 16 36 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.07 1.09 6.67 -51.93 -0.35 0.75 16 38 H 0.06 0.83 7.29 -51.93 -0.38 0.45 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.15 3.22 4.61 -51.93 -0.24 2.98 16 41 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.13 7.61 -51.93 -0.39 0.74 16 45 H 0.21 4.26 2.94 -52.49 -0.15 4.11 16 46 H 0.14 2.19 7.60 -52.48 -0.40 1.79 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -27.34 371.00 -7.87 -35.20 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.00 Total: 13.28 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.53 Total: -7.53 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.36 Total: -33.47 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.62 Total: -26.29 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.67 Total: 13.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.34 -7.87 -35.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069596651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.601 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds