Wall clock time and date at job start Tue Mar 31 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34688 * 117.00416 * 2 1 4 4 O 1.21438 * 119.99696 * 359.97438 * 3 2 1 5 5 C 1.47922 * 119.99926 * 179.97438 * 3 2 1 6 6 C 1.39603 * 120.00469 * 179.97438 * 5 3 2 7 7 C 1.37812 * 119.99564 * 180.02562 * 6 5 3 8 8 C 1.39556 * 120.00553 * 0.02562 * 7 6 5 9 9 C 1.48041 * 119.99440 * 179.97438 * 8 7 6 10 10 O 1.21530 * 119.99972 * 27.23879 * 9 8 7 11 11 N 1.34783 * 120.00252 * 207.24226 * 9 8 7 12 12 C 1.46493 * 119.99754 * 0.79475 * 11 9 8 13 13 C 1.50696 * 109.47290 * 258.33223 * 12 11 9 14 14 H 1.07998 * 119.99955 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00211 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00001 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47323 * 90.00287 * 17 15 13 19 19 H 1.48499 * 109.46972 * 210.00269 * 17 15 13 20 20 H 1.48499 * 109.47227 * 330.00267 * 17 15 13 21 21 C 1.46499 * 120.00036 * 180.79794 * 11 9 8 22 22 H 1.08997 * 109.47418 * 354.31878 * 21 11 9 23 23 C 1.53006 * 109.46877 * 234.32143 * 21 11 9 24 24 C 1.52996 * 109.47180 * 114.32327 * 21 11 9 25 25 C 1.53003 * 117.49871 * 248.61832 * 24 21 11 26 26 C 1.53002 * 117.49927 * 179.97438 * 24 21 11 27 27 C 1.39553 * 120.01211 * 0.27487 * 8 7 6 28 28 C 1.37820 * 119.99998 * 359.44455 * 27 8 7 29 29 H 1.09003 * 109.47295 * 60.00389 * 1 2 3 30 30 H 1.08998 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47037 * 300.00380 * 1 2 3 32 32 H 1.08001 * 120.00048 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.99497 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47270 * 18.33131 * 12 11 9 35 35 H 1.08997 * 109.47043 * 138.32645 * 12 11 9 36 36 H 0.97002 * 120.00292 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46880 * 300.00064 * 23 21 11 38 38 H 1.08999 * 109.47150 * 179.97438 * 23 21 11 39 39 H 1.09006 * 109.46606 * 60.00102 * 23 21 11 40 40 H 1.08998 * 115.54907 * 34.32966 * 24 21 11 41 41 H 1.08997 * 117.49890 * 0.02562 * 25 24 21 42 42 H 1.08996 * 117.49627 * 145.01913 * 25 24 21 43 43 H 1.08993 * 117.50305 * 214.97683 * 26 24 21 44 44 H 1.09000 * 117.49431 * 0.02562 * 26 24 21 45 45 H 1.07997 * 119.99981 * 179.72956 * 27 8 7 46 46 H 1.08004 * 120.00019 * 180.25548 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2185 -0.0005 5 6 3.5407 1.2773 0.0006 6 6 4.1747 2.5211 0.0000 7 6 5.5509 2.5929 0.0000 8 6 6.3108 1.4224 0.0000 9 6 7.7892 1.4998 -0.0005 10 8 8.3473 2.4661 0.4807 11 7 8.5163 0.4985 -0.5349 12 6 7.8433 -0.6582 -1.1307 13 6 7.8852 -1.8155 -0.1664 14 1 8.3656 -1.7009 0.7941 15 6 7.3113 -3.0209 -0.5107 16 7 7.3483 -4.0310 0.3306 17 14 6.4811 -3.2193 -2.1723 18 1 7.4754 -3.6911 -3.1693 19 1 5.3822 -4.2119 -2.0612 20 1 5.9257 -1.9126 -2.6073 21 6 9.9796 0.5671 -0.5197 22 1 10.2941 1.5359 -0.1319 23 6 10.5132 0.3898 -1.9427 24 6 10.5330 -0.5442 0.3745 25 6 11.2028 -0.1282 1.6857 26 6 12.0528 -0.6419 0.5213 27 6 5.6774 0.1789 -0.0058 28 6 4.3011 0.1066 0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.5866 3.4270 -0.0004 33 1 6.0414 3.5551 -0.0008 34 1 6.8059 -0.4032 -1.3473 35 1 8.3495 -0.9368 -2.0549 36 1 6.9441 -4.8790 0.0885 37 1 10.1988 -0.5791 -2.3306 38 1 11.6019 0.4413 -1.9316 39 1 10.1189 1.1816 -2.5798 40 1 9.9670 -1.4757 0.3714 41 1 11.2488 0.9371 1.9115 42 1 11.0773 -0.7860 2.5457 43 1 12.4865 -1.6374 0.6157 44 1 12.6584 0.0859 -0.0188 45 1 6.2656 -0.7268 -0.0102 46 1 3.8108 -0.8557 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069596651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:16 Heat of formation + Delta-G solvation = -51.604084 kcal Electronic energy + Delta-G solvation = -29048.760017 eV Core-core repulsion = 25098.231862 eV Total energy + Delta-G solvation = -3950.528155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90861 -41.34535 -39.47629 -38.44707 -37.55805 -36.67321 -34.62176 -33.16576 -32.32690 -31.06666 -29.93147 -28.72949 -26.19041 -25.24296 -24.11227 -23.67777 -23.10288 -22.37068 -21.32519 -20.33379 -19.09912 -18.94423 -18.36516 -18.20371 -17.57574 -17.44147 -16.46689 -16.30748 -15.95205 -15.88746 -15.32898 -15.21011 -15.07392 -14.78506 -14.71420 -14.49206 -14.37464 -13.98466 -13.64542 -13.51167 -13.24251 -13.23032 -13.02984 -12.96906 -12.63278 -12.55019 -12.25272 -12.18102 -11.87911 -11.85385 -11.81319 -11.61209 -11.40476 -11.06648 -10.86928 -10.76050 -10.69767 -10.18086 -9.93685 -9.46212 -8.28523 -6.34112 -0.71703 0.29830 1.13574 1.40115 1.45639 1.51322 1.60517 1.88899 2.11764 2.33998 2.73066 3.01631 3.03312 3.46164 3.67802 3.79588 3.84987 3.93102 4.10163 4.23768 4.26077 4.28076 4.32175 4.33028 4.38546 4.49452 4.55000 4.67568 4.68199 4.72878 4.77615 4.87608 4.93470 4.97710 5.00902 5.07811 5.14157 5.19202 5.28063 5.30454 5.34096 5.36732 5.41280 5.58033 5.73723 5.80044 6.17646 6.56497 6.57456 6.73971 7.13477 7.29651 8.84311 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011991 B = 0.004370 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.492052 B = 6406.357877 C = 7983.266827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.516 3.484 4 O -0.525 6.525 5 C -0.116 4.116 6 C -0.065 4.065 7 C -0.076 4.076 8 C -0.110 4.110 9 C 0.549 3.451 10 O -0.583 6.583 11 N -0.574 5.574 12 C 0.186 3.814 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.040 3.960 16 N -0.923 5.923 17 Si 0.910 3.090 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.237 1.237 21 C 0.172 3.828 22 H 0.082 0.918 23 C -0.150 4.150 24 C -0.185 4.185 25 C -0.188 4.188 26 C -0.153 4.153 27 C -0.130 4.130 28 C -0.076 4.076 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.270 0.730 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.186 0.814 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 6.576 -4.715 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.362 3.638 4 O -0.416 6.416 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.095 4.095 8 C -0.113 4.113 9 C 0.339 3.661 10 O -0.466 6.466 11 N -0.302 5.302 12 C 0.064 3.936 13 C -0.569 4.569 14 H 0.076 0.924 15 C -0.161 4.161 16 N -0.561 5.561 17 Si 0.734 3.266 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.160 1.160 21 C 0.069 3.931 22 H 0.100 0.900 23 C -0.208 4.208 24 C -0.204 4.204 25 C -0.225 4.225 26 C -0.190 4.190 27 C -0.147 4.147 28 C -0.094 4.094 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.085 0.915 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.129 0.871 45 H 0.202 0.798 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.849 7.133 -4.470 9.714 hybrid contribution -0.552 -0.702 -0.182 0.912 sum -5.401 6.430 -4.651 9.600 Atomic orbital electron populations 1.23641 0.73886 1.05976 1.02983 1.86574 1.25648 1.31662 1.83579 1.21229 0.88977 0.81626 0.71974 1.90785 1.67114 1.36608 1.47134 1.19412 0.89174 0.95396 1.07708 1.21255 0.93778 0.97043 0.96261 1.21265 0.92997 0.98065 0.97138 1.20283 0.92955 0.95194 1.02858 1.18613 0.87506 0.82231 0.77772 1.90653 1.73191 1.33967 1.48760 1.47867 1.06774 1.19538 1.55989 1.20501 0.95154 0.83646 0.94267 1.21380 1.37106 0.95215 1.03232 0.92421 1.25544 0.95830 0.95087 0.99681 1.69997 1.44907 1.03508 1.37654 0.86253 0.79360 0.80152 0.80878 1.19238 1.20694 1.16024 1.20572 0.78416 0.97577 0.96565 0.89985 1.22038 1.02235 1.02295 0.94213 1.23140 0.96206 1.02114 0.98945 1.22927 1.06009 1.01002 0.92581 1.22947 0.92154 1.02851 1.01037 1.23344 0.96058 1.00709 0.94637 1.21574 0.93322 0.98570 0.95947 0.91334 0.85017 0.91451 0.82356 0.83151 0.91666 0.94043 0.92029 0.92194 0.89352 0.92156 0.86495 0.89215 0.90015 0.88467 0.87085 0.79818 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -9.17 9.80 -55.98 -0.55 -9.72 16 3 C 0.52 14.91 7.90 70.39 0.56 15.46 16 4 O -0.53 -16.40 16.12 20.04 0.32 -16.08 16 5 C -0.12 -3.47 5.88 -20.05 -0.12 -3.59 16 6 C -0.07 -1.84 9.58 22.50 0.22 -1.62 16 7 C -0.08 -2.34 9.57 22.49 0.22 -2.13 16 8 C -0.11 -4.03 5.55 -20.04 -0.11 -4.14 16 9 C 0.55 22.26 7.49 86.84 0.65 22.91 16 10 O -0.58 -25.45 15.98 -3.81 -0.06 -25.51 16 11 N -0.57 -22.53 2.47 -805.33 -1.99 -24.52 16 12 C 0.19 7.51 3.50 85.63 0.30 7.81 16 13 C -0.53 -25.24 6.02 25.60 0.15 -25.08 16 14 H 0.06 3.15 6.28 -2.91 -0.02 3.13 16 15 C 0.04 1.98 5.36 84.65 0.45 2.43 16 16 N -0.92 -49.87 13.96 21.45 0.30 -49.57 16 17 Si 0.91 36.64 27.47 68.60 1.88 38.52 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 20 H -0.24 -8.66 6.54 99.48 0.65 -8.01 16 21 C 0.17 6.03 2.87 44.99 0.13 6.16 16 22 H 0.08 2.99 6.67 -2.39 -0.02 2.97 16 23 C -0.15 -4.31 8.84 71.98 0.64 -3.67 16 24 C -0.19 -6.72 4.86 -10.79 -0.05 -6.77 16 25 C -0.19 -6.22 10.18 30.61 0.31 -5.91 16 26 C -0.15 -4.34 9.74 30.61 0.30 -4.04 16 27 C -0.13 -4.84 7.44 22.49 0.17 -4.68 16 28 C -0.08 -2.48 9.60 22.50 0.22 -2.26 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.16 3.79 7.64 -2.91 -0.02 3.77 16 33 H 0.15 4.21 7.87 -2.91 -0.02 4.19 16 34 H 0.07 2.60 3.35 -2.39 -0.01 2.59 16 35 H 0.04 1.61 5.77 -2.39 -0.01 1.60 16 36 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 37 H 0.06 1.82 6.67 -2.39 -0.02 1.81 16 38 H 0.09 2.06 7.29 -2.39 -0.02 2.05 16 39 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.12 5.19 4.61 -2.39 -0.01 5.17 16 41 H 0.09 2.89 8.05 -2.39 -0.02 2.87 16 42 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.11 2.60 7.61 -2.39 -0.02 2.59 16 45 H 0.19 7.76 2.94 -2.91 -0.01 7.75 16 46 H 0.15 4.49 7.60 -2.91 -0.02 4.47 16 Total: -1.00 -60.41 371.00 6.09 -54.32 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: 0.96 Total: 39.99 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.22 Total: -7.43 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.69 Total: -74.09 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.29 Total: -51.31 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 1.88 Total: 38.52 kcal Total: -60.41 6.09 -54.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069596651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.716 kcal (2) G-P(sol) polarization free energy of solvation -60.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds