Wall clock time and date at job start Tue Mar 31 2020 04:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47449 * 2 1 4 4 O 1.42902 * 109.47016 * 239.99751 * 2 1 3 5 5 C 1.35906 * 116.99680 * 84.86357 * 4 2 1 6 6 C 1.38755 * 120.05548 * 354.57766 * 5 4 2 7 7 C 1.38116 * 119.94315 * 179.97438 * 6 5 4 8 8 C 1.38291 * 120.05666 * 359.97438 * 7 6 5 9 9 C 1.38246 * 120.11016 * 359.97438 * 8 7 6 10 10 C 1.38165 * 120.05709 * 0.29642 * 9 8 7 11 11 C 1.50693 * 120.02898 * 179.72779 * 10 9 8 12 12 F 1.39905 * 109.47418 * 359.97438 * 11 10 9 13 13 F 1.39903 * 109.47427 * 119.99889 * 11 10 9 14 14 F 1.39897 * 109.47349 * 239.99941 * 11 10 9 15 15 C 1.50698 * 109.46901 * 120.00185 * 2 1 3 16 16 O 1.21286 * 120.00251 * 120.00051 * 15 2 1 17 17 N 1.34774 * 120.00243 * 299.99563 * 15 2 1 18 18 C 1.46500 * 119.99988 * 0.02562 * 17 15 2 19 19 C 1.46500 * 120.00352 * 180.02562 * 17 15 2 20 20 C 1.50692 * 109.47171 * 90.00122 * 19 17 15 21 21 H 1.07994 * 120.00453 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00087 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99527 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00054 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47066 * 60.00302 * 24 22 20 26 26 H 1.48500 * 109.47262 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47452 * 300.00506 * 24 22 20 28 28 H 1.08995 * 109.47449 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47275 * 300.00030 * 1 2 3 30 30 H 1.09007 * 109.46661 * 59.99773 * 1 2 3 31 31 H 1.07998 * 120.02799 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.97459 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.94526 * 180.02562 * 8 7 6 34 34 H 1.08007 * 119.97108 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.47268 * 89.99577 * 18 17 15 36 36 H 1.08991 * 109.47549 * 209.99793 * 18 17 15 37 37 H 1.08998 * 109.46890 * 329.99984 * 18 17 15 38 38 H 1.09000 * 109.47098 * 210.00437 * 19 17 15 39 39 H 1.09006 * 109.47160 * 329.99990 * 19 17 15 40 40 H 0.97001 * 119.99805 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1097 0.0619 -2.3049 6 6 1.6551 1.3726 -2.3289 7 6 1.7618 2.1182 -3.4866 8 6 2.3217 1.5596 -4.6211 9 6 2.7763 0.2542 -4.5994 10 6 2.6667 -0.4976 -3.4454 11 6 3.1569 -1.9224 -3.4243 12 9 3.6769 -2.2555 -4.6797 13 9 4.1561 -2.0576 -2.4544 14 9 2.0924 -2.7774 -3.1193 15 6 2.0322 -0.7104 1.2304 16 8 2.7295 -1.6966 1.1192 17 7 1.7067 -0.2500 2.4545 18 6 0.8641 0.9408 2.5890 19 6 2.1955 -0.9403 3.6507 20 6 3.5228 -0.3564 4.0606 21 1 3.9586 0.4487 3.4878 22 6 4.1805 -0.8492 5.1678 23 7 3.6495 -1.8294 5.8657 24 14 5.8261 -0.1259 5.6754 25 1 5.6613 1.3202 5.9704 26 1 6.3215 -0.8255 6.8880 27 1 6.8041 -0.2975 4.5712 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.2190 1.8097 -1.4428 32 1 1.4086 3.1386 -3.5057 33 1 2.4046 2.1444 -5.5252 34 1 3.2135 -0.1796 -5.4866 35 1 -0.1838 0.6426 2.6225 36 1 1.1218 1.4664 3.5084 37 1 1.0273 1.5995 1.7361 38 1 1.4775 -0.8151 4.4613 39 1 2.3169 -2.0016 3.4337 40 1 4.1119 -2.1759 6.6448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069700607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:01 Heat of formation + Delta-G solvation = -183.040441 kcal Electronic energy + Delta-G solvation = -29244.385515 eV Core-core repulsion = 24610.468017 eV Total energy + Delta-G solvation = -4633.917498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.95709 -47.53452 -47.33282 -40.81063 -39.14494 -37.47441 -35.00660 -33.09103 -32.42066 -31.41627 -30.23485 -27.72116 -26.32008 -25.97407 -24.56981 -23.34828 -22.19826 -21.83516 -19.06504 -18.90271 -18.28424 -18.24922 -17.55995 -16.59545 -16.50587 -15.89297 -15.69548 -15.44637 -15.11435 -14.67114 -14.51173 -14.37832 -14.26344 -14.05399 -13.84271 -13.56257 -13.53112 -13.40427 -13.34659 -12.88249 -12.77080 -12.59389 -12.31710 -12.18464 -11.92996 -11.85897 -11.55563 -11.25609 -11.12463 -11.06070 -10.92040 -10.60057 -10.19152 -9.69695 -9.56165 -9.01597 -8.56119 -8.46158 -7.76928 -6.07533 -4.12780 0.68334 1.02645 2.63667 2.79936 3.19248 3.24673 3.30542 3.35562 3.39542 3.79959 3.92166 4.07289 4.41599 4.49070 4.57011 4.58506 4.65948 4.82022 4.85882 4.91771 4.98271 5.14214 5.27081 5.37482 5.40883 5.49653 5.50959 5.75344 5.80842 5.86805 5.93518 6.05396 6.13383 6.30818 6.88192 7.09138 7.36668 7.43861 7.87929 8.17531 8.24605 8.81990 8.96373 9.52349 11.00639 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003480 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.504699 B = 8044.080897 C = 8656.378770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.064 3.936 3 H 0.097 0.903 4 O -0.273 6.273 5 C 0.188 3.812 6 C -0.217 4.217 7 C -0.047 4.047 8 C -0.167 4.167 9 C -0.035 4.035 10 C -0.221 4.221 11 C 0.516 3.484 12 F -0.185 7.185 13 F -0.165 7.165 14 F -0.173 7.173 15 C 0.508 3.492 16 O -0.511 6.511 17 N -0.596 5.596 18 C 0.077 3.923 19 C 0.248 3.752 20 C -0.531 4.531 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 9.795 -20.225 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.004 3.996 3 H 0.114 0.886 4 O -0.184 6.184 5 C 0.140 3.860 6 C -0.236 4.236 7 C -0.065 4.065 8 C -0.185 4.185 9 C -0.053 4.053 10 C -0.223 4.223 11 C 0.461 3.539 12 F -0.166 7.166 13 F -0.147 7.147 14 F -0.154 7.154 15 C 0.292 3.708 16 O -0.385 6.385 17 N -0.330 5.330 18 C -0.067 4.067 19 C 0.129 3.871 20 C -0.569 4.569 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.734 8.862 -20.029 23.227 hybrid contribution 0.912 0.455 0.448 1.114 sum -6.822 9.316 -19.581 22.732 Atomic orbital electron populations 1.22596 0.92791 1.04852 1.04195 1.22469 0.95736 0.97146 0.84212 0.88559 1.86311 1.79628 1.36855 1.15616 1.18713 0.91002 0.90351 0.85899 1.21358 1.07647 0.93636 1.00924 1.21176 0.94095 0.99442 0.91753 1.21029 1.02919 0.95183 0.99366 1.20879 0.94841 0.93790 0.95811 1.19370 1.12596 0.94526 0.95790 1.17984 0.75827 0.86645 0.73397 1.93128 1.87497 1.93732 1.42269 1.93291 1.61745 1.96431 1.63187 1.93223 1.56316 1.72971 1.92902 1.19654 0.81898 0.85563 0.83665 1.90750 1.36396 1.25709 1.85648 1.48051 1.49929 1.28408 1.06621 1.21860 0.94017 0.88053 1.02740 1.19347 0.94341 0.93788 0.79613 1.21372 1.04919 1.19293 1.11360 0.92487 1.24929 0.97951 0.94895 0.96204 1.69918 1.39105 1.25902 1.18302 0.86546 0.83860 0.78989 0.77974 1.20230 1.21098 1.20117 0.90562 0.88820 0.91202 0.84043 0.84814 0.84804 0.83934 0.93021 0.90285 0.92603 0.94599 0.93636 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 8.80 37.16 0.33 -1.81 16 2 C 0.06 0.98 1.84 -27.89 -0.05 0.93 16 3 H 0.10 1.23 5.58 -51.93 -0.29 0.94 16 4 O -0.27 -4.66 8.24 -39.36 -0.32 -4.99 16 5 C 0.19 2.60 6.48 -39.22 -0.25 2.35 16 6 C -0.22 -2.23 8.24 -39.43 -0.32 -2.56 16 7 C -0.05 -0.37 10.04 -39.61 -0.40 -0.77 16 8 C -0.17 -1.32 10.04 -39.56 -0.40 -1.72 16 9 C -0.04 -0.35 9.43 -39.61 -0.37 -0.72 16 10 C -0.22 -2.94 5.38 -104.48 -0.56 -3.50 16 11 C 0.52 7.82 2.99 36.00 0.11 7.93 16 12 F -0.18 -2.43 15.97 2.25 0.04 -2.40 16 13 F -0.17 -3.00 16.94 2.25 0.04 -2.96 16 14 F -0.17 -2.84 16.96 2.25 0.04 -2.80 16 15 C 0.51 10.73 7.15 -10.99 -0.08 10.65 16 16 O -0.51 -13.57 16.08 -14.36 -0.23 -13.80 16 17 N -0.60 -12.23 2.86 -182.96 -0.52 -12.76 16 18 C 0.08 1.10 8.80 59.85 0.53 1.63 16 19 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16 20 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 24 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.91 4.53 -51.93 -0.24 0.67 16 30 H 0.07 0.63 6.90 -51.93 -0.36 0.27 16 31 H 0.14 1.19 5.43 -52.49 -0.28 0.91 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.14 1.12 7.16 -52.48 -0.38 0.75 16 35 H 0.05 0.61 6.95 -51.93 -0.36 0.24 16 36 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 37 H 0.06 0.61 6.01 -51.93 -0.31 0.30 16 38 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -35.26 346.89 -6.20 -41.47 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.25 Total: -3.29 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.93 Total: 5.19 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.21 Total: -38.49 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.56 Total: -18.78 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.11 Total: -8.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.26 -6.20 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069700607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.574 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds