Wall clock time and date at job start Tue Mar 31 2020 04:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47449 * 2 1 4 4 O 1.42902 * 109.47016 * 239.99751 * 2 1 3 5 5 C 1.35906 * 116.99680 * 84.86357 * 4 2 1 6 6 C 1.38755 * 120.05548 * 354.57766 * 5 4 2 7 7 C 1.38116 * 119.94315 * 179.97438 * 6 5 4 8 8 C 1.38291 * 120.05666 * 359.97438 * 7 6 5 9 9 C 1.38246 * 120.11016 * 359.97438 * 8 7 6 10 10 C 1.38165 * 120.05709 * 0.29642 * 9 8 7 11 11 C 1.50693 * 120.02898 * 179.72779 * 10 9 8 12 12 F 1.39905 * 109.47418 * 359.97438 * 11 10 9 13 13 F 1.39903 * 109.47427 * 119.99889 * 11 10 9 14 14 F 1.39897 * 109.47349 * 239.99941 * 11 10 9 15 15 C 1.50698 * 109.46901 * 120.00185 * 2 1 3 16 16 O 1.21286 * 120.00251 * 120.00051 * 15 2 1 17 17 N 1.34774 * 120.00243 * 299.99563 * 15 2 1 18 18 C 1.46500 * 119.99988 * 0.02562 * 17 15 2 19 19 C 1.46500 * 120.00352 * 180.02562 * 17 15 2 20 20 C 1.50692 * 109.47171 * 90.00122 * 19 17 15 21 21 H 1.07994 * 120.00453 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00087 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99527 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00054 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47066 * 60.00302 * 24 22 20 26 26 H 1.48500 * 109.47262 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47452 * 300.00506 * 24 22 20 28 28 H 1.08995 * 109.47449 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47275 * 300.00030 * 1 2 3 30 30 H 1.09007 * 109.46661 * 59.99773 * 1 2 3 31 31 H 1.07998 * 120.02799 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.97459 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.94526 * 180.02562 * 8 7 6 34 34 H 1.08007 * 119.97108 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.47268 * 89.99577 * 18 17 15 36 36 H 1.08991 * 109.47549 * 209.99793 * 18 17 15 37 37 H 1.08998 * 109.46890 * 329.99984 * 18 17 15 38 38 H 1.09000 * 109.47098 * 210.00437 * 19 17 15 39 39 H 1.09006 * 109.47160 * 329.99990 * 19 17 15 40 40 H 0.97001 * 119.99805 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1097 0.0619 -2.3049 6 6 1.6551 1.3726 -2.3289 7 6 1.7618 2.1182 -3.4866 8 6 2.3217 1.5596 -4.6211 9 6 2.7763 0.2542 -4.5994 10 6 2.6667 -0.4976 -3.4454 11 6 3.1569 -1.9224 -3.4243 12 9 3.6769 -2.2555 -4.6797 13 9 4.1561 -2.0576 -2.4544 14 9 2.0924 -2.7774 -3.1193 15 6 2.0322 -0.7104 1.2304 16 8 2.7295 -1.6966 1.1192 17 7 1.7067 -0.2500 2.4545 18 6 0.8641 0.9408 2.5890 19 6 2.1955 -0.9403 3.6507 20 6 3.5228 -0.3564 4.0606 21 1 3.9586 0.4487 3.4878 22 6 4.1805 -0.8492 5.1678 23 7 3.6495 -1.8294 5.8657 24 14 5.8261 -0.1259 5.6754 25 1 5.6613 1.3202 5.9704 26 1 6.3215 -0.8255 6.8880 27 1 6.8041 -0.2975 4.5712 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.2190 1.8097 -1.4428 32 1 1.4086 3.1386 -3.5057 33 1 2.4046 2.1444 -5.5252 34 1 3.2135 -0.1796 -5.4866 35 1 -0.1838 0.6426 2.6225 36 1 1.1218 1.4664 3.5084 37 1 1.0273 1.5995 1.7361 38 1 1.4775 -0.8151 4.4613 39 1 2.3169 -2.0016 3.4337 40 1 4.1119 -2.1759 6.6448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069700607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:01 Heat of formation + Delta-G solvation = -205.548741 kcal Electronic energy + Delta-G solvation = -29245.361548 eV Core-core repulsion = 24610.468017 eV Total energy + Delta-G solvation = -4634.893531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.16190 -48.70553 -48.62800 -41.87151 -40.49150 -38.52426 -36.74390 -34.95013 -33.55826 -32.50460 -31.06658 -29.55248 -27.70795 -26.98047 -25.94567 -24.77552 -23.21771 -22.95825 -20.37082 -20.06738 -19.49560 -19.43272 -18.75129 -18.55217 -17.91353 -17.27259 -16.85173 -16.62863 -16.28450 -16.00606 -15.74992 -15.54464 -15.44943 -15.39931 -15.07408 -14.82158 -14.79775 -14.70142 -14.48416 -14.24318 -13.95306 -13.70757 -13.56894 -13.54170 -13.35607 -13.05614 -12.84647 -12.68336 -12.56472 -12.44476 -12.22716 -12.10910 -11.95549 -11.73449 -10.66330 -10.64857 -10.29448 -9.51680 -9.41131 -8.25032 -6.39885 -0.07255 0.27318 1.34719 1.40002 1.46199 1.52153 1.64350 1.70678 2.34905 2.50119 2.54200 2.78016 3.03275 3.05124 3.37934 3.39615 3.60878 3.83137 3.85566 3.92173 4.16606 4.32412 4.34763 4.40830 4.55603 4.64204 4.70273 4.75246 4.91744 4.95061 5.07180 5.15636 5.19323 5.24690 5.38863 5.50211 5.64956 5.77757 6.01983 6.13265 6.61801 6.69597 7.22206 7.36686 8.82226 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.003480 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.504699 B = 8044.080897 C = 8656.378770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 H 0.129 0.871 4 O -0.314 6.314 5 C 0.153 3.847 6 C -0.216 4.216 7 C -0.035 4.035 8 C -0.152 4.152 9 C -0.041 4.041 10 C -0.244 4.244 11 C 0.507 3.493 12 F -0.176 7.176 13 F -0.192 7.192 14 F -0.187 7.187 15 C 0.494 3.506 16 O -0.585 6.585 17 N -0.599 5.599 18 C 0.066 3.934 19 C 0.260 3.740 20 C -0.546 4.546 21 H 0.055 0.945 22 C 0.008 3.992 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.255 1.255 26 H -0.278 1.278 27 H -0.282 1.282 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.034 0.966 39 H -0.006 1.006 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 14.291 -22.100 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.017 3.983 3 H 0.146 0.854 4 O -0.227 6.227 5 C 0.107 3.893 6 C -0.235 4.235 7 C -0.052 4.052 8 C -0.170 4.170 9 C -0.058 4.058 10 C -0.246 4.246 11 C 0.453 3.547 12 F -0.157 7.157 13 F -0.173 7.173 14 F -0.169 7.169 15 C 0.281 3.719 16 O -0.465 6.465 17 N -0.331 5.331 18 C -0.075 4.075 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.073 0.927 22 C -0.191 4.191 23 N -0.567 5.567 24 Si 0.791 3.209 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.208 1.208 28 H 0.073 0.927 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.181 0.819 32 H 0.194 0.806 33 H 0.189 0.811 34 H 0.175 0.825 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.012 0.988 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.797 13.420 -21.920 27.165 hybrid contribution 1.204 -0.937 0.907 1.775 sum -7.592 12.483 -21.013 25.593 Atomic orbital electron populations 1.22609 0.89592 1.04390 1.06877 1.22397 0.97778 0.96861 0.81221 0.85419 1.86250 1.80890 1.38728 1.16843 1.19064 0.93353 0.91996 0.84916 1.21666 1.07000 0.92002 1.02793 1.21706 0.92227 1.00866 0.90436 1.21536 1.00527 0.94108 1.00844 1.21182 0.94941 0.94694 0.95031 1.19490 1.14350 0.93315 0.97436 1.18440 0.75069 0.88136 0.73037 1.93127 1.87370 1.93855 1.41349 1.93230 1.62916 1.96678 1.64484 1.93180 1.56858 1.73761 1.93079 1.20855 0.80636 0.84936 0.85472 1.90702 1.39765 1.29106 1.86927 1.48024 1.50181 1.29754 1.05161 1.22286 0.94540 0.86167 1.04481 1.18802 0.94037 0.91574 0.81659 1.21675 1.06001 1.19326 1.11481 0.92718 1.25862 1.01783 0.95211 0.96241 1.70042 1.40783 1.27109 1.18793 0.85481 0.78704 0.79351 0.77365 1.17918 1.20283 1.20778 0.92716 0.86605 0.87796 0.81917 0.80598 0.81052 0.82507 0.89795 0.90797 0.88320 0.94854 0.98831 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.61 8.80 71.98 0.63 -2.97 16 2 C 0.08 2.26 1.84 29.85 0.05 2.31 16 3 H 0.13 2.85 5.58 -2.39 -0.01 2.84 16 4 O -0.31 -10.95 8.24 -73.46 -0.61 -11.55 16 5 C 0.15 4.08 6.48 22.51 0.15 4.22 16 6 C -0.22 -3.59 8.24 22.36 0.18 -3.41 16 7 C -0.03 -0.36 10.04 22.25 0.22 -0.14 16 8 C -0.15 -1.67 10.04 22.28 0.22 -1.44 16 9 C -0.04 -0.71 9.43 22.25 0.21 -0.50 16 10 C -0.24 -6.40 5.38 -19.77 -0.11 -6.51 16 11 C 0.51 16.19 2.99 71.23 0.21 16.40 16 12 F -0.18 -4.76 15.97 44.97 0.72 -4.04 16 13 F -0.19 -7.51 16.94 44.97 0.76 -6.75 16 14 F -0.19 -6.60 16.96 44.97 0.76 -5.84 16 15 C 0.49 21.60 7.15 87.66 0.63 22.23 16 16 O -0.59 -33.58 16.08 15.99 0.26 -33.32 16 17 N -0.60 -24.98 2.86 -851.15 -2.43 -27.41 16 18 C 0.07 1.73 8.80 127.77 1.12 2.86 16 19 C 0.26 14.12 5.16 85.63 0.44 14.57 16 20 C -0.55 -31.72 9.39 25.60 0.24 -31.48 16 21 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 22 C 0.01 0.48 5.46 84.66 0.46 0.94 16 23 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 24 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 25 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.12 1.77 4.53 -2.39 -0.01 1.76 16 30 H 0.10 1.43 6.90 -2.38 -0.02 1.41 16 31 H 0.16 1.87 5.43 -2.91 -0.02 1.85 16 32 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 34 H 0.16 2.13 7.16 -2.91 -0.02 2.11 16 35 H 0.08 1.68 6.95 -2.39 -0.02 1.66 16 36 H 0.07 2.03 8.07 -2.39 -0.02 2.02 16 37 H 0.10 1.73 6.01 -2.39 -0.01 1.72 16 38 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 39 H -0.01 -0.41 7.42 -2.38 -0.02 -0.43 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -86.62 346.89 7.55 -79.08 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 1.10 Total: 1.86 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 4.68 Total: 17.08 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.15 Total: -83.85 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.35 Total: -44.87 kcal Atomic # 9 Polarization: -18.87 SS G_CDS: 2.24 Total: -16.63 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -86.62 7.55 -79.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069700607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.473 kcal (2) G-P(sol) polarization free energy of solvation -86.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds