Wall clock time and date at job start Tue Mar 31 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46932 * 2 1 4 4 O 1.42899 * 109.46738 * 119.99007 * 2 1 3 5 5 C 1.35900 * 117.00364 * 276.33174 * 4 2 1 6 6 C 1.38752 * 120.05623 * 357.61809 * 5 4 2 7 7 C 1.38122 * 119.94697 * 180.27261 * 6 5 4 8 8 C 1.38294 * 120.05250 * 359.76974 * 7 6 5 9 9 C 1.38242 * 120.11187 * 359.97438 * 8 7 6 10 10 C 1.38163 * 120.05838 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.03160 * 179.97438 * 10 9 8 12 12 F 1.39900 * 109.46778 * 0.02562 * 11 10 9 13 13 F 1.39890 * 109.47229 * 240.00407 * 11 10 9 14 14 F 1.39900 * 109.46842 * 120.00052 * 11 10 9 15 15 C 1.50694 * 109.47432 * 239.99054 * 2 1 3 16 16 O 1.21280 * 120.00262 * 254.13724 * 15 2 1 17 17 N 1.34781 * 119.99892 * 74.14014 * 15 2 1 18 18 C 1.46500 * 119.99802 * 5.27591 * 17 15 2 19 19 C 1.46494 * 120.00296 * 185.27750 * 17 15 2 20 20 C 1.50707 * 109.47263 * 89.99608 * 19 17 15 21 21 H 1.08004 * 119.99574 * 0.02562 * 20 19 17 22 22 C 1.37870 * 120.00251 * 180.02562 * 20 19 17 23 23 N 1.31515 * 119.99960 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00238 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47259 * 89.99610 * 24 22 20 26 26 H 1.48501 * 109.46947 * 209.99691 * 24 22 20 27 27 H 1.48501 * 109.46724 * 329.99716 * 24 22 20 28 28 H 1.09000 * 109.47675 * 305.23488 * 1 2 3 29 29 H 1.09006 * 109.46986 * 65.23281 * 1 2 3 30 30 H 1.09003 * 109.47116 * 185.23057 * 1 2 3 31 31 H 1.08004 * 120.02701 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.97799 * 179.74536 * 7 6 5 33 33 H 1.08001 * 119.94236 * 179.97438 * 8 7 6 34 34 H 1.08003 * 119.97042 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.47189 * 93.76177 * 18 17 15 36 36 H 1.09003 * 109.47233 * 213.76284 * 18 17 15 37 37 H 1.09005 * 109.47259 * 333.75830 * 18 17 15 38 38 H 1.08995 * 109.47486 * 209.99635 * 19 17 15 39 39 H 1.09007 * 109.47331 * 330.00024 * 19 17 15 40 40 H 0.97004 * 120.00053 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6734 1.1669 5 6 2.0860 0.0558 2.3109 6 6 1.7606 1.4046 2.2993 7 6 1.8478 2.1450 3.4621 8 6 2.2545 1.5419 4.6382 9 6 2.5742 0.1970 4.6535 10 6 2.4886 -0.5479 3.4931 11 6 2.8378 -2.0139 3.5104 12 9 3.2164 -2.3878 4.8042 13 9 3.8963 -2.2515 2.6273 14 9 1.7241 -2.7631 3.1159 15 6 2.0324 -0.7106 -1.2303 16 8 2.5052 -1.8235 -1.1372 17 7 1.9563 -0.1092 -2.4341 18 6 1.4932 1.2772 -2.5323 19 6 2.3366 -0.8419 -3.6443 20 6 1.1293 -1.5502 -4.2030 21 1 0.1742 -1.4628 -3.7064 22 6 1.2441 -2.3096 -5.3479 23 7 2.4071 -2.4156 -5.9529 24 14 -0.2524 -3.1869 -6.0408 25 1 -0.9493 -2.2939 -7.0010 26 1 0.1787 -4.4246 -6.7392 27 1 -1.1762 -3.5398 -4.9330 28 1 -0.3634 0.5929 0.8394 29 1 -0.3633 0.4305 -0.9332 30 1 -0.3633 -1.0234 0.0937 31 1 1.4431 1.8761 1.3809 32 1 1.5986 3.1958 3.4527 33 1 2.3225 2.1226 5.5463 34 1 2.8912 -0.2718 5.5735 35 1 2.3517 1.9488 -2.5199 36 1 0.9409 1.4108 -3.4625 37 1 0.8425 1.5037 -1.6877 38 1 2.7232 -0.1429 -4.3859 39 1 3.1061 -1.5740 -3.3991 40 1 2.4878 -2.9496 -6.7587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069700609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:04 Heat of formation + Delta-G solvation = -207.894319 kcal Electronic energy + Delta-G solvation = -29198.322091 eV Core-core repulsion = 24563.326848 eV Total energy + Delta-G solvation = -4634.995243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.15991 -48.70298 -48.62820 -41.87324 -40.48533 -38.53459 -36.71216 -34.89410 -33.57297 -32.51896 -31.04788 -29.68694 -27.56434 -26.98081 -26.04716 -24.81757 -23.19338 -22.94347 -20.32017 -20.08267 -19.49541 -19.42976 -18.70975 -18.58441 -17.96698 -17.23879 -16.84647 -16.65242 -16.21727 -16.02816 -15.87602 -15.53922 -15.43583 -15.38065 -15.07189 -14.82077 -14.79161 -14.70150 -14.42866 -14.19856 -13.94588 -13.67508 -13.57321 -13.53079 -13.33709 -13.12119 -12.93574 -12.75139 -12.57314 -12.50327 -12.24852 -12.19713 -11.90219 -11.73430 -10.66197 -10.65322 -10.29188 -9.51648 -9.41161 -8.24842 -6.39937 -0.06407 0.28198 1.35360 1.39285 1.47891 1.50347 1.61626 1.70875 2.35338 2.49394 2.55134 2.78219 3.03548 3.05397 3.37339 3.40144 3.57151 3.81038 3.85964 3.91668 4.17724 4.28654 4.33949 4.41120 4.55295 4.61662 4.68315 4.75709 4.90359 4.94626 5.07307 5.13200 5.19647 5.25582 5.39780 5.49933 5.65314 5.77810 6.01660 6.13078 6.61029 6.69857 7.21359 7.35876 8.82701 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017809 B = 0.003318 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.872486 B = 8436.801197 C = 9255.107797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.077 3.923 3 H 0.136 0.864 4 O -0.315 6.315 5 C 0.153 3.847 6 C -0.217 4.217 7 C -0.033 4.033 8 C -0.152 4.152 9 C -0.040 4.040 10 C -0.243 4.243 11 C 0.507 3.493 12 F -0.175 7.175 13 F -0.191 7.191 14 F -0.189 7.189 15 C 0.496 3.504 16 O -0.585 6.585 17 N -0.600 5.600 18 C 0.064 3.936 19 C 0.259 3.741 20 C -0.545 4.545 21 H 0.058 0.942 22 C 0.007 3.993 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.259 1.259 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.163 0.837 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.157 0.843 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.031 0.969 39 H -0.006 1.006 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 16.691 22.648 28.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.018 3.982 3 H 0.153 0.847 4 O -0.227 6.227 5 C 0.107 3.893 6 C -0.235 4.235 7 C -0.051 4.051 8 C -0.170 4.170 9 C -0.058 4.058 10 C -0.245 4.245 11 C 0.453 3.547 12 F -0.157 7.157 13 F -0.173 7.173 14 F -0.170 7.170 15 C 0.284 3.716 16 O -0.465 6.465 17 N -0.332 5.332 18 C -0.078 4.078 19 C 0.138 3.862 20 C -0.584 4.584 21 H 0.076 0.924 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.184 1.184 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.181 0.819 32 H 0.194 0.806 33 H 0.189 0.811 34 H 0.175 0.825 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.049 0.951 39 H 0.012 0.988 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.903 15.804 22.468 27.745 hybrid contribution -0.123 -1.581 -1.035 1.894 sum -4.026 14.223 21.432 26.036 Atomic orbital electron populations 1.22365 0.90350 1.03976 1.05958 1.22417 0.97231 0.97318 0.81242 0.84650 1.86278 1.80394 1.39516 1.16542 1.19068 0.93595 0.92026 0.84642 1.21635 1.08113 0.91037 1.02707 1.21702 0.91380 1.01565 0.90440 1.21536 1.01530 0.93397 1.00549 1.21175 0.94107 0.95090 0.95397 1.19476 1.17515 0.91529 0.96030 1.18444 0.74200 0.88998 0.73047 1.93128 1.91535 1.93012 1.38009 1.93211 1.58524 1.95650 1.69867 1.93190 1.53385 1.79465 1.90958 1.20808 0.79156 0.86282 0.85397 1.90688 1.46862 1.22410 1.86549 1.48040 1.64184 1.15095 1.05892 1.22234 1.00935 0.79737 1.04861 1.18812 0.95004 0.91241 0.81152 1.21712 0.95907 1.30877 1.09859 0.92376 1.25882 0.99354 0.96887 0.97088 1.70058 1.25573 1.41186 1.19986 0.85396 0.78799 0.78106 0.78402 1.18378 1.20907 1.19783 0.87214 0.88188 0.93200 0.81926 0.80579 0.81067 0.82518 0.90619 0.90597 0.87925 0.95055 0.98780 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.86 71.98 0.64 -3.36 16 2 C 0.08 2.28 1.80 29.85 0.05 2.33 16 3 H 0.14 2.74 5.12 -2.39 -0.01 2.73 16 4 O -0.31 -10.84 8.29 -73.78 -0.61 -11.46 16 5 C 0.15 3.94 6.46 22.51 0.15 4.09 16 6 C -0.22 -3.40 8.37 22.37 0.19 -3.21 16 7 C -0.03 -0.31 10.04 22.26 0.22 -0.09 16 8 C -0.15 -1.53 10.04 22.28 0.22 -1.30 16 9 C -0.04 -0.66 9.43 22.25 0.21 -0.45 16 10 C -0.24 -6.17 5.38 -19.77 -0.11 -6.27 16 11 C 0.51 15.76 2.99 71.24 0.21 15.97 16 12 F -0.18 -4.61 15.97 44.97 0.72 -3.90 16 13 F -0.19 -7.14 16.94 44.97 0.76 -6.38 16 14 F -0.19 -6.66 16.96 44.97 0.76 -5.89 16 15 C 0.50 21.71 6.97 87.65 0.61 22.32 16 16 O -0.59 -33.45 16.11 15.62 0.25 -33.20 16 17 N -0.60 -25.13 2.86 -851.12 -2.43 -27.57 16 18 C 0.06 1.69 9.87 127.77 1.26 2.95 16 19 C 0.26 14.07 5.22 85.64 0.45 14.52 16 20 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 21 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 22 C 0.01 0.40 5.46 84.65 0.46 0.87 16 23 N -0.93 -56.67 13.29 21.44 0.28 -56.38 16 24 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 H 0.11 1.71 7.30 -2.39 -0.02 1.69 16 29 H 0.10 2.08 6.29 -2.38 -0.01 2.07 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.16 1.72 5.61 -2.91 -0.02 1.70 16 32 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 33 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 34 H 0.16 2.00 7.16 -2.91 -0.02 1.98 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 37 H 0.10 1.82 4.59 -2.38 -0.01 1.81 16 38 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 39 H -0.01 -0.38 7.36 -2.38 -0.02 -0.40 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -85.90 349.67 7.66 -78.24 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.09 Total: 2.25 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 4.81 Total: 17.24 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.15 Total: -83.95 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.36 Total: -44.65 kcal Atomic # 9 Polarization: -18.41 SS G_CDS: 2.24 Total: -16.17 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -85.90 7.66 -78.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069700609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.657 kcal (2) G-P(sol) polarization free energy of solvation -85.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds