Wall clock time and date at job start Tue Mar 31 2020 04:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00112 * 2 1 4 4 C 1.50696 * 109.47510 * 270.00475 * 3 2 1 5 5 H 1.08001 * 119.99640 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00440 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99891 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00314 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47431 * 59.99400 * 8 6 4 10 10 H 1.48504 * 109.47322 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46947 * 299.99774 * 8 6 4 12 12 C 1.34772 * 119.99868 * 180.02562 * 2 1 3 13 13 O 1.21589 * 120.00088 * 184.40468 * 12 2 1 14 14 C 1.47554 * 120.00298 * 4.39664 * 12 2 1 15 15 C 1.39785 * 120.04666 * 310.90655 * 14 12 2 16 16 C 1.36560 * 120.12737 * 179.74112 * 15 14 12 17 17 C 1.39595 * 120.22754 * 0.25077 * 16 15 14 18 18 C 1.48251 * 119.95393 * 179.97438 * 17 16 15 19 19 C 1.39422 * 120.10431 * 359.72784 * 18 17 16 20 20 C 1.37942 * 119.90138 * 179.74630 * 19 18 17 21 21 C 1.38583 * 120.09818 * 0.55402 * 20 19 18 22 22 F 1.35094 * 119.89673 * 179.72074 * 21 20 19 23 23 C 1.38576 * 120.20260 * 359.69985 * 21 20 19 24 24 C 1.37950 * 120.10110 * 0.02562 * 23 21 20 25 25 C 1.39392 * 120.09055 * 0.03016 * 17 16 15 26 26 C 1.38055 * 119.86998 * 359.96753 * 25 17 16 27 27 F 1.35102 * 120.11181 * 180.02562 * 26 25 17 28 28 H 1.09002 * 109.46855 * 273.01221 * 1 2 3 29 29 H 1.08997 * 109.47119 * 33.00858 * 1 2 3 30 30 H 1.09001 * 109.47311 * 153.01274 * 1 2 3 31 31 H 1.09001 * 109.47079 * 30.00305 * 3 2 1 32 32 H 1.09001 * 109.47116 * 150.00501 * 3 2 1 33 33 H 0.97000 * 119.99931 * 180.02562 * 7 6 4 34 34 H 1.07996 * 119.93330 * 0.02562 * 15 14 12 35 35 H 1.08000 * 119.88814 * 180.28062 * 16 15 14 36 36 H 1.08000 * 120.04680 * 0.02562 * 19 18 17 37 37 H 1.07991 * 119.95156 * 180.27635 * 20 19 18 38 38 H 1.07998 * 119.95192 * 180.02562 * 23 21 20 39 39 H 1.08002 * 120.04537 * 180.02562 * 24 23 21 40 40 H 1.08006 * 120.06566 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0963 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.5543 3.6176 -0.6730 8 14 3.4375 3.4172 -3.4338 9 1 2.1397 3.5956 -4.1331 10 1 4.1801 4.7032 -3.4338 11 1 4.2392 2.3821 -4.1346 12 6 2.1388 -1.1672 -0.0005 13 8 3.3520 -1.1688 0.0803 14 6 1.4044 -2.4431 -0.0991 15 6 0.3101 -2.6871 0.7358 16 6 -0.3741 -3.8652 0.6424 17 6 0.0180 -4.8342 -0.2828 18 6 -0.7288 -6.1113 -0.3787 19 6 -1.8187 -6.3485 0.4577 20 6 -2.5138 -7.5361 0.3613 21 6 -2.1231 -8.4974 -0.5572 22 9 -2.8034 -9.6614 -0.6443 23 6 -1.0372 -8.2682 -1.3870 24 6 -0.3396 -7.0812 -1.3016 25 6 1.1114 -4.6030 -1.1159 26 6 1.8059 -3.4133 -1.0248 27 9 2.8661 -3.1840 -1.8302 28 1 -0.3633 0.0540 1.0263 29 1 -0.3633 0.8618 -0.5598 30 1 -0.3634 -0.9158 -0.4663 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 4.0311 4.4435 -0.8503 34 1 0.0023 -1.9405 1.4529 35 1 -1.2218 -4.0478 1.2862 36 1 -2.1211 -5.6017 1.1769 37 1 -3.3609 -7.7188 1.0057 38 1 -0.7365 -9.0200 -2.1017 39 1 0.5064 -6.9033 -1.9490 40 1 1.4147 -5.3532 -1.8313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069815641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:31 Heat of formation + Delta-G solvation = -66.541741 kcal Electronic energy + Delta-G solvation = -26702.721090 eV Core-core repulsion = 22504.624580 eV Total energy + Delta-G solvation = -4198.096510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.112 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.28802 -48.75782 -40.30611 -39.24973 -37.74683 -34.92326 -33.09789 -32.38049 -31.94032 -30.70231 -29.32294 -27.67265 -26.02735 -24.47831 -24.07975 -22.87765 -22.06814 -21.49429 -19.34726 -18.26074 -17.56010 -17.02587 -16.81322 -16.54371 -15.98307 -15.98237 -15.70980 -15.65640 -15.23894 -15.00398 -14.52082 -14.33384 -14.17949 -13.84743 -13.71428 -13.42712 -13.34616 -12.91952 -12.58842 -12.56114 -12.29639 -12.14039 -11.98989 -11.85251 -11.51848 -11.22295 -11.10399 -10.92664 -10.60042 -10.18580 -9.82673 -9.66031 -9.59507 -9.13554 -9.00067 -8.45120 -8.27745 -7.72934 -6.06286 -4.11368 0.06859 0.78865 1.06231 1.26057 2.93522 3.30810 3.32450 3.36060 3.40946 3.60099 3.80571 3.86717 3.99553 4.17280 4.34073 4.41148 4.43356 4.59450 4.69019 4.83058 4.85859 4.88576 5.14160 5.28148 5.30371 5.42244 5.56192 5.62414 5.66624 5.70638 5.75403 5.80178 5.88625 5.93073 6.07350 6.16893 6.25294 6.40856 6.62885 6.98447 7.38613 7.45856 7.89469 8.19430 8.27965 8.81986 8.97687 9.53682 11.01815 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.025538 B = 0.002392 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.129496 B =11703.668712 C =12070.228018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.591 5.591 3 C 0.245 3.755 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.545 3.455 13 O -0.525 6.525 14 C -0.144 4.144 15 C -0.060 4.060 16 C -0.128 4.128 17 C -0.011 4.011 18 C -0.053 4.053 19 C -0.077 4.077 20 C -0.151 4.151 21 C 0.098 3.902 22 F -0.140 7.140 23 C -0.150 4.150 24 C -0.079 4.079 25 C -0.153 4.153 26 C 0.151 3.849 27 F -0.119 7.119 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.752 -22.077 2.701 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.331 3.669 13 O -0.402 6.402 14 C -0.149 4.149 15 C -0.078 4.078 16 C -0.146 4.146 17 C -0.011 4.011 18 C -0.054 4.054 19 C -0.095 4.095 20 C -0.170 4.170 21 C 0.079 3.921 22 F -0.118 7.118 23 C -0.169 4.169 24 C -0.097 4.097 25 C -0.171 4.171 26 C 0.131 3.869 27 F -0.097 7.097 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.983 -21.878 2.756 26.111 hybrid contribution 0.190 0.207 -1.202 1.234 sum -13.793 -21.672 1.554 25.736 Atomic orbital electron populations 1.21861 0.81327 1.02887 1.00627 1.48088 1.06328 1.07454 1.70398 1.19360 0.92700 0.77593 0.97736 1.21378 1.36838 1.06451 0.92152 0.92479 1.24928 0.95234 0.96319 0.97538 1.69922 1.38189 1.14352 1.30814 0.86543 0.78405 0.77848 0.84564 1.20215 1.21112 1.20100 1.17900 0.87207 0.83129 0.78707 1.90805 1.13164 1.86801 1.49426 1.20482 0.98750 0.96552 0.99085 1.20981 0.92321 0.97243 0.97267 1.20875 1.01116 0.93271 0.99296 1.18509 0.94093 0.92966 0.95539 1.18781 0.96007 0.93414 0.97150 1.21144 0.93805 0.96467 0.98083 1.21101 1.02152 0.93889 0.99827 1.17856 0.93095 0.82778 0.98356 1.91508 1.78767 1.46097 1.95463 1.21107 0.95892 0.99167 1.00745 1.21186 0.99160 0.91966 0.97343 1.21082 0.97011 0.96735 1.02318 1.17517 0.85642 0.93474 0.90308 1.91598 1.53082 1.94634 1.70392 0.93360 0.90645 0.91934 0.94625 0.93521 0.92597 0.83965 0.84634 0.84247 0.84357 0.84377 0.84392 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 9.09 59.85 0.54 1.74 16 2 N -0.59 -12.66 2.86 -184.19 -0.53 -13.19 16 3 C 0.24 6.42 5.21 -5.20 -0.03 6.39 16 4 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.55 11.87 7.00 -12.46 -0.09 11.78 16 13 O -0.52 -13.87 16.19 5.29 0.09 -13.79 16 14 C -0.14 -2.38 4.90 -104.87 -0.51 -2.90 16 15 C -0.06 -0.71 7.54 -39.61 -0.30 -1.01 16 16 C -0.13 -1.19 9.36 -39.68 -0.37 -1.56 16 17 C -0.01 -0.11 5.88 -104.85 -0.62 -0.72 16 18 C -0.05 -0.44 5.88 -104.90 -0.62 -1.06 16 19 C -0.08 -0.53 9.42 -39.25 -0.37 -0.90 16 20 C -0.15 -1.04 10.01 -39.56 -0.40 -1.44 16 21 C 0.10 0.79 7.30 -39.33 -0.29 0.50 16 22 F -0.14 -1.24 17.26 2.25 0.04 -1.20 16 23 C -0.15 -1.10 10.01 -39.56 -0.40 -1.50 16 24 C -0.08 -0.60 9.42 -39.25 -0.37 -0.97 16 25 C -0.15 -1.77 9.40 -39.22 -0.37 -2.14 16 26 C 0.15 2.38 7.25 -38.99 -0.28 2.10 16 27 F -0.12 -2.23 16.50 2.25 0.04 -2.19 16 28 H 0.05 0.61 7.55 -51.93 -0.39 0.21 16 29 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 30 H 0.06 0.83 5.68 -51.93 -0.29 0.54 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 34 H 0.14 1.46 6.55 -52.49 -0.34 1.12 16 35 H 0.14 0.81 6.18 -52.49 -0.32 0.49 16 36 H 0.14 0.66 6.18 -52.49 -0.32 0.33 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.14 0.85 6.19 -52.49 -0.32 0.52 16 40 H 0.14 1.29 6.19 -52.48 -0.32 0.97 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -34.81 349.74 -8.20 -43.00 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -3.94 Total: -3.61 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -4.88 Total: -5.44 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.21 Total: -39.02 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.81 -8.20 -43.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069815641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.538 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds