Wall clock time and date at job start Tue Mar 31 2020 05:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48498 * 109.46887 * 239.99832 * 3 2 1 5 5 H 1.48496 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47308 * 119.99996 * 3 2 1 7 7 C 1.39884 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00230 * 195.40649 * 7 2 1 9 9 C 1.41218 * 120.00398 * 15.41354 * 7 2 1 10 10 C 1.40838 * 120.17169 * 24.69199 * 9 7 2 11 11 C 1.36437 * 119.80644 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18457 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81610 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99938 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47241 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99568 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99992 * 179.97438 * 15 14 13 18 18 C 1.48142 * 122.64259 * 5.59160 * 17 15 14 19 19 C 1.52772 * 110.69312 * 228.36005 * 18 17 15 20 20 O 1.43924 * 111.92815 * 314.79129 * 19 18 17 21 21 C 1.41094 * 111.16218 * 57.98758 * 20 19 18 22 22 H 1.08997 * 109.77990 * 51.06261 * 21 20 19 23 23 C 1.52790 * 118.42743 * 178.19842 * 21 20 19 24 24 C 1.55470 * 102.76602 * 158.72806 * 23 21 20 25 25 C 1.55042 * 106.31044 * 336.04007 * 24 23 21 26 26 C 1.45635 * 122.64238 * 185.29464 * 17 15 14 27 27 H 1.08997 * 109.90208 * 240.87516 * 26 17 15 28 28 C 1.39311 * 120.36624 * 0.02562 * 12 11 10 29 29 C 1.36436 * 120.18545 * 359.97438 * 28 12 11 30 30 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.09665 * 0.27915 * 10 9 7 32 32 H 1.07998 * 119.91227 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47195 * 300.00353 * 14 13 12 34 34 H 1.08997 * 109.47345 * 60.00101 * 14 13 12 35 35 H 1.09000 * 109.23497 * 348.68073 * 18 17 15 36 36 H 1.09003 * 109.23340 * 108.09653 * 18 17 15 37 37 H 1.09000 * 108.98576 * 75.41639 * 19 18 17 38 38 H 1.08996 * 108.99228 * 194.23746 * 19 18 17 39 39 H 1.08997 * 110.75088 * 277.04451 * 23 21 20 40 40 H 1.08997 * 110.75212 * 40.22498 * 23 21 20 41 41 H 1.08994 * 110.09158 * 95.25152 * 24 23 21 42 42 H 1.08999 * 110.08624 * 216.77039 * 24 23 21 43 43 H 1.09007 * 110.29116 * 114.88831 * 25 24 23 44 44 H 1.09002 * 110.29132 * 236.90941 * 25 24 23 45 45 H 1.08002 * 119.90664 * 179.97438 * 28 12 11 46 46 H 1.07998 * 120.09608 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0966 1.6965 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0592 -1.2282 0.2490 9 6 1.3404 -2.4126 -0.3240 10 6 0.1818 -2.3844 -1.1243 11 6 -0.4579 -3.5493 -1.4328 12 6 0.0316 -4.7642 -0.9581 13 8 -0.6108 -5.9181 -1.2690 14 6 -0.0571 -7.1289 -0.7500 15 6 -0.8976 -8.2975 -1.1964 16 8 -1.8747 -8.1115 -1.8904 17 7 -0.5633 -9.5491 -0.8246 18 6 0.5435 -9.8339 0.1181 19 6 1.4542 -10.9293 -0.4339 20 8 0.7028 -12.0337 -0.9697 21 6 -0.1704 -11.6071 -1.9927 22 1 0.3801 -11.0165 -2.7249 23 6 -1.0203 -12.6561 -2.7079 24 6 -2.1801 -11.8100 -3.3046 25 6 -2.2803 -10.5321 -2.4323 26 6 -1.2658 -10.7277 -1.3128 27 1 -1.7121 -11.2664 -0.4770 28 6 1.1763 -4.8007 -0.1650 29 6 1.8279 -3.6448 0.1527 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1968 -1.4438 -1.4960 32 1 -1.3467 -3.5296 -2.0460 33 1 0.9606 -7.2512 -1.1205 34 1 -0.0445 -7.0851 0.3390 35 1 1.1265 -8.9260 0.2722 36 1 0.1280 -10.1600 1.0716 37 1 2.0773 -10.5083 -1.2229 38 1 2.0961 -11.2943 0.3679 39 1 -0.4494 -13.1414 -3.4995 40 1 -1.4004 -13.3930 -2.0004 41 1 -1.9554 -11.5419 -4.3368 42 1 -3.1141 -12.3699 -3.2585 43 1 -2.0294 -9.6508 -3.0227 44 1 -3.2836 -10.4354 -2.0173 45 1 1.5491 -5.7466 0.1993 46 1 2.7150 -3.6747 0.7679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071830067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:34 Heat of formation + Delta-G solvation = -81.295269 kcal Electronic energy + Delta-G solvation = -28116.036922 eV Core-core repulsion = 24164.221261 eV Total energy + Delta-G solvation = -3951.815661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.13541 -39.22111 -38.24209 -36.56558 -36.22375 -35.03564 -33.35676 -30.23573 -30.06946 -29.31085 -28.91569 -28.05822 -26.40733 -24.72071 -23.41469 -22.05053 -21.05868 -20.98697 -20.60478 -19.12689 -17.51945 -17.26433 -17.08685 -16.72208 -16.25486 -16.16607 -15.47796 -15.26083 -15.03583 -14.91430 -14.74018 -14.07952 -13.98121 -13.58596 -13.30213 -13.21394 -12.94723 -12.77217 -12.24312 -12.16495 -12.03105 -11.88454 -11.74062 -11.59330 -11.41583 -11.33672 -11.12480 -11.05649 -10.94785 -10.75629 -10.69581 -10.41816 -10.06331 -9.89092 -9.46599 -9.25141 -9.07620 -8.69219 -7.68569 -7.07568 -6.73529 -4.30152 2.46452 2.50759 2.75509 2.91184 3.06595 3.08758 3.19180 3.20895 3.86769 3.93105 4.18982 4.33459 4.46059 4.58977 4.61201 4.62865 4.68353 4.84413 4.97960 5.07689 5.13755 5.15537 5.24211 5.25225 5.29159 5.36672 5.43391 5.57596 5.63735 5.69892 5.72653 5.95755 5.97141 6.03677 6.17247 6.40953 6.67441 6.71633 6.93112 7.05561 7.12396 7.15365 7.41893 7.51577 7.72805 7.96838 8.07456 8.17800 8.38628 8.60565 8.86736 8.94104 10.20248 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.030271 B = 0.002209 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.760136 B =12672.344404 C =13342.283821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.132 4.132 11 C -0.115 4.115 12 C -0.012 4.012 13 O -0.303 6.303 14 C 0.052 3.948 15 C 0.525 3.475 16 O -0.506 6.506 17 N -0.615 5.615 18 C 0.074 3.926 19 C 0.047 3.953 20 O -0.364 6.364 21 C 0.062 3.938 22 H 0.067 0.933 23 C -0.110 4.110 24 C -0.122 4.122 25 C -0.125 4.125 26 C 0.108 3.892 27 H 0.083 0.917 28 C -0.168 4.168 29 C -0.198 4.198 30 H 0.281 0.719 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -21.304 -1.475 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.086 3.914 10 C -0.151 4.151 11 C -0.134 4.134 12 C -0.055 4.055 13 O -0.218 6.218 14 C -0.027 4.027 15 C 0.313 3.687 16 O -0.379 6.379 17 N -0.352 5.352 18 C -0.049 4.049 19 C -0.030 4.030 20 O -0.282 6.282 21 C 0.002 3.998 22 H 0.085 0.915 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.163 4.163 26 C 0.005 3.995 27 H 0.101 0.899 28 C -0.187 4.187 29 C -0.218 4.218 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.223 -21.165 -1.896 21.251 hybrid contribution 0.685 0.958 0.439 1.257 sum 0.462 -20.208 -1.457 20.265 Atomic orbital electron populations 1.69807 1.07461 1.29259 1.36049 1.25895 0.94785 1.01276 0.92420 0.86341 0.80051 0.80270 0.79878 1.18893 1.20363 1.19097 1.19446 0.97173 0.90923 1.41591 0.90571 1.17615 0.91956 0.92160 0.89690 1.21063 0.98056 0.96259 0.99726 1.19860 1.00594 0.90117 1.02832 1.18638 0.96367 0.84339 1.06205 1.85938 1.52183 1.11573 1.72086 1.22120 0.96449 0.84778 0.99369 1.20384 0.85305 0.82878 0.80118 1.90673 1.26668 1.83954 1.36633 1.47937 1.34310 1.05265 1.47683 1.22485 0.89078 1.00305 0.93053 1.23004 0.93069 0.87484 0.99478 1.87912 1.56204 1.31857 1.52249 1.23100 0.90679 0.96078 0.89905 0.91526 1.22065 0.96088 0.97075 0.99541 1.22559 0.98047 0.95747 0.99615 1.22218 0.98652 0.99135 0.96282 1.22365 0.94242 0.85356 0.97583 0.89864 1.20355 0.97401 0.97754 1.03195 1.20548 1.02737 0.92551 1.05966 0.90807 0.85269 0.88261 0.90314 0.90247 0.88375 0.90169 0.92236 0.87186 0.90543 0.90310 0.91100 0.90941 0.88039 0.90842 0.88987 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.60 10.82 55.54 0.60 -20.00 16 2 C 0.07 1.82 5.19 -17.34 -0.09 1.73 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.07 9.05 -37.83 -0.34 -12.41 16 8 H 0.08 1.90 7.89 -52.48 -0.41 1.49 16 9 C 0.09 2.32 5.58 -106.80 -0.60 1.73 16 10 C -0.13 -3.44 8.63 -39.25 -0.34 -3.77 16 11 C -0.12 -2.83 9.92 -39.83 -0.40 -3.22 16 12 C -0.01 -0.29 6.71 -38.78 -0.26 -0.55 16 13 O -0.30 -6.48 9.65 -38.64 -0.37 -6.85 16 14 C 0.05 0.83 3.65 36.01 0.13 0.96 16 15 C 0.52 8.07 7.74 -10.98 -0.09 7.99 16 16 O -0.51 -9.53 13.46 -14.36 -0.19 -9.72 16 17 N -0.61 -7.20 2.96 -164.07 -0.49 -7.69 16 18 C 0.07 0.60 6.50 -3.26 -0.02 0.58 16 19 C 0.05 0.35 6.81 37.04 0.25 0.60 16 20 O -0.36 -3.54 10.85 -34.89 -0.38 -3.92 16 21 C 0.06 0.59 2.97 -25.20 -0.07 0.52 16 22 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 23 C -0.11 -0.85 6.77 -25.53 -0.17 -1.03 16 24 C -0.12 -0.99 6.88 -24.34 -0.17 -1.16 16 25 C -0.13 -1.40 5.32 -25.99 -0.14 -1.54 16 26 C 0.11 1.18 3.20 -67.10 -0.21 0.96 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 C -0.17 -3.66 8.96 -39.83 -0.36 -4.02 16 29 C -0.20 -4.73 9.74 -39.25 -0.38 -5.12 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.13 3.45 6.08 -52.49 -0.32 3.13 16 32 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.08 1.09 7.43 -51.93 -0.39 0.70 16 34 H 0.08 1.12 7.42 -51.93 -0.39 0.74 16 35 H 0.10 0.69 6.31 -51.93 -0.33 0.36 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 1.43 5.79 -51.93 -0.30 1.13 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.64 6.27 -52.49 -0.33 1.31 16 46 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -31.09 365.12 -10.27 -41.35 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.66 Total: 5.57 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.25 Total: -17.75 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.12 Total: -27.69 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.94 Total: -20.49 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.09 -10.27 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071830067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.940 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds