Wall clock time and date at job start Tue Mar 31 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86802 * 120.00394 * 2 1 4 4 H 1.48494 * 109.47225 * 90.00096 * 3 2 1 5 5 H 1.48501 * 109.47228 * 210.00315 * 3 2 1 6 6 H 1.48497 * 109.46947 * 330.00052 * 3 2 1 7 7 C 1.39894 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99681 * 162.22037 * 7 2 1 9 9 C 1.41211 * 120.00233 * 342.21444 * 7 2 1 10 10 C 1.40835 * 120.17907 * 335.28284 * 9 7 2 11 11 C 1.36439 * 119.81135 * 179.73921 * 10 9 7 12 12 C 1.39312 * 120.18517 * 0.56368 * 11 10 9 13 13 O 1.35666 * 119.81764 * 179.71262 * 12 11 10 14 14 C 1.42894 * 117.00386 * 359.97438 * 13 12 11 15 15 C 1.50700 * 109.47604 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99766 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99980 * 179.97438 * 15 14 13 18 18 C 1.47060 * 120.24928 * 359.72336 * 17 15 14 19 19 C 1.53914 * 107.30128 * 130.04637 * 18 17 15 20 20 O 1.42703 * 108.43057 * 55.33335 * 19 18 17 21 21 C 1.42806 * 115.45815 * 295.63413 * 20 19 18 22 22 H 1.08997 * 112.35947 * 292.19628 * 21 20 19 23 23 C 1.55301 * 107.32906 * 168.47710 * 21 20 19 24 24 C 1.54313 * 104.16619 * 282.12328 * 23 21 20 25 25 C 1.54027 * 106.53852 * 336.17928 * 24 23 21 26 26 C 1.45888 * 120.24545 * 179.97438 * 17 15 14 27 27 H 1.08999 * 109.90122 * 346.25134 * 26 17 15 28 28 C 1.39311 * 120.36358 * 359.69497 * 12 11 10 29 29 C 1.36445 * 120.18592 * 0.02562 * 28 12 11 30 30 H 0.97003 * 119.99360 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.09200 * 0.02562 * 10 9 7 32 32 H 1.07994 * 119.90353 * 180.25880 * 11 10 9 33 33 H 1.09009 * 109.46659 * 300.00044 * 14 13 12 34 34 H 1.08997 * 109.47446 * 59.99185 * 14 13 12 35 35 H 1.09004 * 109.84972 * 249.60715 * 18 17 15 36 36 H 1.09006 * 109.85006 * 10.60304 * 18 17 15 37 37 H 1.08999 * 109.77287 * 295.59554 * 19 18 17 38 38 H 1.08997 * 109.73334 * 175.05194 * 19 18 17 39 39 H 1.08999 * 110.49423 * 40.80020 * 23 21 20 40 40 H 1.09000 * 110.48992 * 163.32199 * 23 21 20 41 41 H 1.08993 * 110.04298 * 95.45143 * 24 23 21 42 42 H 1.08995 * 110.04159 * 216.86351 * 24 23 21 43 43 H 1.08993 * 110.08043 * 240.95483 * 25 24 23 44 44 H 1.09011 * 110.07590 * 119.40184 * 25 24 23 45 45 H 1.08003 * 119.90841 * 180.02562 * 28 12 11 46 46 H 1.07996 * 120.09215 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0463 1.4000 5 1 3.5405 1.4401 -0.7001 6 1 1.4405 2.6526 -0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0496 -1.2338 -0.2862 9 6 1.3527 -2.4054 0.3725 10 6 0.2239 -2.3603 1.2134 11 6 -0.4068 -3.5180 1.5648 12 6 0.0698 -4.7432 1.1037 13 8 -0.5597 -5.8901 1.4624 14 6 -1.7010 -5.7651 2.3131 15 6 -2.2643 -7.1326 2.6024 16 8 -1.7402 -8.1174 2.1264 17 7 -3.3504 -7.2613 3.3900 18 6 -3.9865 -6.0714 3.9749 19 6 -5.4932 -6.1634 3.6744 20 8 -5.9773 -7.4099 4.1726 21 6 -5.4385 -8.5733 3.5437 22 1 -5.7622 -8.6721 2.5076 23 6 -5.8512 -9.7979 4.4051 24 6 -4.8773 -9.7635 5.6016 25 6 -3.6316 -8.9896 5.1308 26 6 -3.9005 -8.5825 3.6731 27 1 -3.4746 -9.3161 2.9887 28 6 1.1890 -4.7969 0.2759 29 6 1.8279 -3.6480 -0.0895 30 1 -0.4849 0.8401 0.0004 31 1 -0.1441 -1.4116 1.5754 32 1 -1.2750 -3.4848 2.2062 33 1 -1.4067 -5.2877 3.2479 34 1 -2.4586 -5.1578 1.8179 35 1 -3.8215 -6.0553 5.0523 36 1 -3.5723 -5.1702 3.5227 37 1 -5.6585 -6.1102 2.5983 38 1 -6.0173 -5.3440 4.1663 39 1 -6.8807 -9.6938 4.7478 40 1 -5.7302 -10.7211 3.8384 41 1 -5.3395 -9.2502 6.4447 42 1 -4.6015 -10.7783 5.8879 43 1 -2.7510 -9.6297 5.1844 44 1 -3.4876 -8.1019 5.7469 45 1 1.5519 -5.7507 -0.0777 46 1 2.6952 -3.6915 -0.7316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071830068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:38 Heat of formation + Delta-G solvation = -90.975004 kcal Electronic energy + Delta-G solvation = -28133.135379 eV Core-core repulsion = 24180.899973 eV Total energy + Delta-G solvation = -3952.235406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02633 -39.24106 -38.25284 -36.32588 -36.03121 -35.06865 -33.38980 -30.13747 -29.89719 -29.61705 -28.88228 -28.07264 -26.58565 -24.72020 -23.79387 -21.69923 -21.04140 -20.89627 -20.27927 -18.88958 -17.85056 -17.35761 -17.22142 -16.68774 -16.27293 -16.07663 -15.78914 -15.34994 -15.08387 -14.58344 -14.46678 -14.24133 -14.00258 -13.71359 -13.27252 -13.03999 -12.88283 -12.43269 -12.36270 -12.20394 -11.97202 -11.89617 -11.71530 -11.56490 -11.54679 -11.48538 -11.15355 -11.07515 -11.04866 -10.66170 -10.61334 -10.29010 -10.03464 -9.83740 -9.72662 -9.39013 -9.07099 -8.76040 -7.70736 -7.07101 -6.77571 -4.29768 2.47877 2.51420 2.72022 2.92506 3.05963 3.09537 3.17807 3.34904 3.91596 3.93876 4.17465 4.27876 4.46824 4.52701 4.56863 4.69078 4.76067 4.88608 4.91653 5.09910 5.13698 5.23540 5.27672 5.30163 5.33264 5.35544 5.48891 5.54963 5.59100 5.62999 5.75339 5.86213 5.99085 6.01378 6.23214 6.27369 6.63217 6.84298 6.87875 7.02166 7.07737 7.23212 7.35210 7.51175 7.83334 7.95290 8.05848 8.11765 8.37782 8.59304 8.85850 8.93896 10.17424 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.002304 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.391168 B =12148.745831 C =12920.411224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.279 1.279 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.135 4.135 11 C -0.174 4.174 12 C -0.014 4.014 13 O -0.305 6.305 14 C 0.054 3.946 15 C 0.520 3.480 16 O -0.514 6.514 17 N -0.611 5.611 18 C 0.068 3.932 19 C 0.049 3.951 20 O -0.372 6.372 21 C 0.077 3.923 22 H 0.078 0.922 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.129 4.129 26 C 0.111 3.889 27 H 0.110 0.890 28 C -0.107 4.107 29 C -0.195 4.195 30 H 0.279 0.721 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -11.397 10.617 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.204 1.204 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.154 4.154 11 C -0.193 4.193 12 C -0.057 4.057 13 O -0.220 6.220 14 C -0.025 4.025 15 C 0.308 3.692 16 O -0.388 6.388 17 N -0.347 5.347 18 C -0.055 4.055 19 C -0.028 4.028 20 O -0.291 6.291 21 C 0.019 3.981 22 H 0.096 0.904 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.168 4.168 26 C 0.007 3.993 27 H 0.128 0.872 28 C -0.126 4.126 29 C -0.215 4.215 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.533 -11.961 10.405 20.844 hybrid contribution 0.347 1.228 -0.097 1.280 sum -13.186 -10.733 10.308 19.883 Atomic orbital electron populations 1.69840 1.07525 1.29087 1.36112 1.25888 0.94735 1.01268 0.92326 0.86311 0.80509 0.80628 0.79264 1.19342 1.18634 1.20389 1.19496 0.98119 0.91157 1.40366 0.90403 1.17613 0.91825 0.92193 0.89767 1.20934 0.98523 0.96431 0.99515 1.20560 1.01342 0.92880 1.04493 1.18596 0.97849 0.83442 1.05854 1.85910 1.40655 1.30687 1.64699 1.22114 0.90469 0.93637 0.96312 1.20515 0.79503 0.91402 0.77779 1.90704 1.58320 1.39931 1.49807 1.47726 1.29794 1.07052 1.50148 1.22656 0.94339 0.88414 1.00066 1.23035 0.92994 0.87029 0.99791 1.87805 1.66632 1.13123 1.61514 1.23432 0.91708 0.86297 0.96709 0.90417 1.22480 1.00499 0.95860 0.96552 1.22055 0.95045 1.00229 0.98089 1.22343 0.98515 1.00642 0.95298 1.22160 0.93877 0.85318 0.97979 0.87225 1.19626 0.95217 0.97848 0.99870 1.20615 1.03157 0.92133 1.05563 0.90974 0.86016 0.88915 0.90085 0.90091 0.89991 0.88302 0.92328 0.87310 0.90108 0.89963 0.91260 0.91515 0.91142 0.91117 0.88297 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.23 10.96 55.55 0.61 -19.62 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.40 29.60 -169.99 -5.03 13.36 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.07 9.04 -37.83 -0.34 -12.41 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 9 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 10 C -0.13 -3.40 8.64 -39.25 -0.34 -3.74 16 11 C -0.17 -3.94 8.96 -39.83 -0.36 -4.30 16 12 C -0.01 -0.33 6.71 -38.78 -0.26 -0.59 16 13 O -0.30 -6.57 9.65 -38.61 -0.37 -6.95 16 14 C 0.05 0.88 3.56 36.01 0.13 1.01 16 15 C 0.52 8.24 7.76 -10.98 -0.09 8.15 16 16 O -0.51 -10.16 15.91 -14.35 -0.23 -10.39 16 17 N -0.61 -7.29 2.72 -164.32 -0.45 -7.74 16 18 C 0.07 0.61 6.28 -3.26 -0.02 0.59 16 19 C 0.05 0.39 7.03 37.63 0.26 0.66 16 20 O -0.37 -3.55 10.00 -35.23 -0.35 -3.91 16 21 C 0.08 0.70 3.97 -24.81 -0.10 0.60 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 23 C -0.12 -0.83 6.43 -24.82 -0.16 -0.99 16 24 C -0.12 -0.86 6.71 -25.51 -0.17 -1.03 16 25 C -0.13 -1.21 6.40 -25.82 -0.17 -1.37 16 26 C 0.11 1.19 3.04 -67.18 -0.20 0.99 16 27 H 0.11 1.36 7.06 -51.93 -0.37 0.99 16 28 C -0.11 -2.53 9.92 -39.83 -0.40 -2.93 16 29 C -0.19 -4.81 9.74 -39.25 -0.38 -5.19 16 30 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 31 H 0.12 3.13 6.17 -52.48 -0.32 2.81 16 32 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 33 H 0.08 1.17 7.49 -51.92 -0.39 0.78 16 34 H 0.08 1.18 7.13 -51.93 -0.37 0.81 16 35 H 0.08 0.65 7.48 -51.93 -0.39 0.27 16 36 H 0.10 0.80 5.97 -51.93 -0.31 0.49 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.68 7.16 -51.92 -0.37 0.31 16 45 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 46 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -31.29 367.24 -10.19 -41.47 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.63 Total: 5.31 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -3.27 Total: -17.07 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.16 Total: -27.36 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.95 Total: -21.24 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.29 -10.19 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071830068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.504 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds