Wall clock time and date at job start Tue Mar 31 2020 05:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86802 * 120.00394 * 2 1 4 4 H 1.48494 * 109.47225 * 90.00096 * 3 2 1 5 5 H 1.48501 * 109.47228 * 210.00315 * 3 2 1 6 6 H 1.48497 * 109.46947 * 330.00052 * 3 2 1 7 7 C 1.39894 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99681 * 162.22037 * 7 2 1 9 9 C 1.41211 * 120.00233 * 342.21444 * 7 2 1 10 10 C 1.40835 * 120.17907 * 335.28284 * 9 7 2 11 11 C 1.36439 * 119.81135 * 179.73921 * 10 9 7 12 12 C 1.39312 * 120.18517 * 0.56368 * 11 10 9 13 13 O 1.35666 * 119.81764 * 179.71262 * 12 11 10 14 14 C 1.42894 * 117.00386 * 359.97438 * 13 12 11 15 15 C 1.50700 * 109.47604 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99766 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99980 * 179.97438 * 15 14 13 18 18 C 1.47060 * 120.24928 * 359.72336 * 17 15 14 19 19 C 1.53914 * 107.30128 * 130.04637 * 18 17 15 20 20 O 1.42703 * 108.43057 * 55.33335 * 19 18 17 21 21 C 1.42806 * 115.45815 * 295.63413 * 20 19 18 22 22 H 1.08997 * 112.35947 * 292.19628 * 21 20 19 23 23 C 1.55301 * 107.32906 * 168.47710 * 21 20 19 24 24 C 1.54313 * 104.16619 * 282.12328 * 23 21 20 25 25 C 1.54027 * 106.53852 * 336.17928 * 24 23 21 26 26 C 1.45888 * 120.24545 * 179.97438 * 17 15 14 27 27 H 1.08999 * 109.90122 * 346.25134 * 26 17 15 28 28 C 1.39311 * 120.36358 * 359.69497 * 12 11 10 29 29 C 1.36445 * 120.18592 * 0.02562 * 28 12 11 30 30 H 0.97003 * 119.99360 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.09200 * 0.02562 * 10 9 7 32 32 H 1.07994 * 119.90353 * 180.25880 * 11 10 9 33 33 H 1.09009 * 109.46659 * 300.00044 * 14 13 12 34 34 H 1.08997 * 109.47446 * 59.99185 * 14 13 12 35 35 H 1.09004 * 109.84972 * 249.60715 * 18 17 15 36 36 H 1.09006 * 109.85006 * 10.60304 * 18 17 15 37 37 H 1.08999 * 109.77287 * 295.59554 * 19 18 17 38 38 H 1.08997 * 109.73334 * 175.05194 * 19 18 17 39 39 H 1.08999 * 110.49423 * 40.80020 * 23 21 20 40 40 H 1.09000 * 110.48992 * 163.32199 * 23 21 20 41 41 H 1.08993 * 110.04298 * 95.45143 * 24 23 21 42 42 H 1.08995 * 110.04159 * 216.86351 * 24 23 21 43 43 H 1.08993 * 110.08043 * 240.95483 * 25 24 23 44 44 H 1.09011 * 110.07590 * 119.40184 * 25 24 23 45 45 H 1.08003 * 119.90841 * 180.02562 * 28 12 11 46 46 H 1.07996 * 120.09215 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0463 1.4000 5 1 3.5405 1.4401 -0.7001 6 1 1.4405 2.6526 -0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0496 -1.2338 -0.2862 9 6 1.3527 -2.4054 0.3725 10 6 0.2239 -2.3603 1.2134 11 6 -0.4068 -3.5180 1.5648 12 6 0.0698 -4.7432 1.1037 13 8 -0.5597 -5.8901 1.4624 14 6 -1.7010 -5.7651 2.3131 15 6 -2.2643 -7.1326 2.6024 16 8 -1.7402 -8.1174 2.1264 17 7 -3.3504 -7.2613 3.3900 18 6 -3.9865 -6.0714 3.9749 19 6 -5.4932 -6.1634 3.6744 20 8 -5.9773 -7.4099 4.1726 21 6 -5.4385 -8.5733 3.5437 22 1 -5.7622 -8.6721 2.5076 23 6 -5.8512 -9.7979 4.4051 24 6 -4.8773 -9.7635 5.6016 25 6 -3.6316 -8.9896 5.1308 26 6 -3.9005 -8.5825 3.6731 27 1 -3.4746 -9.3161 2.9887 28 6 1.1890 -4.7969 0.2759 29 6 1.8279 -3.6480 -0.0895 30 1 -0.4849 0.8401 0.0004 31 1 -0.1441 -1.4116 1.5754 32 1 -1.2750 -3.4848 2.2062 33 1 -1.4067 -5.2877 3.2479 34 1 -2.4586 -5.1578 1.8179 35 1 -3.8215 -6.0553 5.0523 36 1 -3.5723 -5.1702 3.5227 37 1 -5.6585 -6.1102 2.5983 38 1 -6.0173 -5.3440 4.1663 39 1 -6.8807 -9.6938 4.7478 40 1 -5.7302 -10.7211 3.8384 41 1 -5.3395 -9.2502 6.4447 42 1 -4.6015 -10.7783 5.8879 43 1 -2.7510 -9.6297 5.1844 44 1 -3.4876 -8.1019 5.7469 45 1 1.5519 -5.7507 -0.0777 46 1 2.6952 -3.6915 -0.7316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071830068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:37 Heat of formation + Delta-G solvation = -107.875460 kcal Electronic energy + Delta-G solvation = -28133.868237 eV Core-core repulsion = 24180.899973 eV Total energy + Delta-G solvation = -3952.968265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98155 -40.66701 -39.62603 -38.04313 -36.73698 -36.07346 -35.23738 -31.64836 -31.39056 -30.77279 -30.21891 -28.93476 -27.64125 -26.50914 -24.54204 -23.28542 -22.71396 -21.63365 -21.53474 -19.83022 -19.34058 -19.12331 -18.13102 -17.95019 -17.40158 -17.22282 -16.98807 -16.62260 -16.18384 -15.81221 -15.71608 -15.50033 -15.07542 -15.02483 -14.67790 -14.27940 -14.22400 -13.93252 -13.71002 -13.36454 -13.30283 -13.07852 -12.91610 -12.80166 -12.75926 -12.61069 -12.32883 -12.23480 -12.18465 -11.76307 -11.74358 -11.63895 -11.32291 -11.30311 -11.10190 -10.92099 -10.82399 -9.69006 -9.58407 -8.94954 -8.61255 -6.23693 0.91495 1.02878 1.30281 1.40604 1.41441 1.52791 1.53628 2.23569 2.63295 2.70272 2.71294 3.30489 3.43795 3.57760 3.68903 3.81556 3.87230 3.96139 4.05643 4.12329 4.20511 4.24219 4.28730 4.37613 4.40549 4.42885 4.53452 4.68311 4.72906 4.80084 4.82419 4.88084 4.97797 4.98764 5.14100 5.14428 5.15616 5.34144 5.35967 5.40860 5.50316 5.63770 5.93781 6.02608 6.05920 6.18981 6.22147 6.53221 6.73597 6.90535 6.94534 7.06482 8.35960 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.002304 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.391168 B =12148.745831 C =12920.411224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.057 3.943 10 C -0.153 4.153 11 C -0.169 4.169 12 C -0.008 4.008 13 O -0.325 6.325 14 C 0.047 3.953 15 C 0.519 3.481 16 O -0.565 6.565 17 N -0.600 5.600 18 C 0.061 3.939 19 C 0.048 3.952 20 O -0.378 6.378 21 C 0.078 3.922 22 H 0.077 0.923 23 C -0.112 4.112 24 C -0.111 4.111 25 C -0.126 4.126 26 C 0.102 3.898 27 H 0.088 0.912 28 C -0.121 4.121 29 C -0.206 4.206 30 H 0.288 0.712 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.260 -10.767 12.095 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.193 1.193 7 C -0.527 4.527 8 H 0.092 0.908 9 C 0.054 3.946 10 C -0.172 4.172 11 C -0.187 4.187 12 C -0.052 4.052 13 O -0.240 6.240 14 C -0.032 4.032 15 C 0.308 3.692 16 O -0.443 6.443 17 N -0.334 5.334 18 C -0.061 4.061 19 C -0.029 4.029 20 O -0.297 6.297 21 C 0.019 3.981 22 H 0.095 0.905 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.165 4.165 26 C -0.001 4.001 27 H 0.106 0.894 28 C -0.140 4.140 29 C -0.226 4.226 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.148 0.852 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.074 0.926 38 H 0.154 0.846 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.266 -11.336 11.919 22.441 hybrid contribution 0.756 0.918 -0.507 1.293 sum -14.510 -10.417 11.412 21.197 Atomic orbital electron populations 1.69872 1.08789 1.30508 1.36182 1.26694 0.95539 1.04292 0.91321 0.85210 0.78992 0.76050 0.79494 1.18619 1.18552 1.19312 1.19722 0.98308 0.92368 1.42298 0.90753 1.17980 0.92878 0.92963 0.90732 1.20953 0.99020 0.96997 1.00249 1.20823 1.01953 0.91736 1.04203 1.18694 0.97443 0.84160 1.04868 1.85882 1.42364 1.30075 1.65720 1.22451 0.89378 0.94659 0.96688 1.20509 0.80159 0.90564 0.78008 1.90684 1.60244 1.41154 1.52244 1.47789 1.28361 1.08710 1.48566 1.22977 0.94852 0.87421 1.00845 1.23193 0.92399 0.87295 1.00035 1.87807 1.66666 1.13537 1.61684 1.23466 0.90121 0.87226 0.97239 0.90527 1.22511 1.00821 0.95408 0.96174 1.22036 0.93967 1.00650 0.98198 1.22315 0.99330 1.00701 0.94152 1.22322 0.95080 0.84275 0.98445 0.89396 1.19869 0.95741 0.98099 1.00241 1.20766 1.03687 0.92187 1.05957 0.90097 0.86894 0.85212 0.87750 0.87965 0.88527 0.87149 0.92644 0.84625 0.89192 0.88805 0.90792 0.90271 0.92020 0.91251 0.87069 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.93 10.96 21.82 0.24 -41.69 16 2 C 0.04 1.77 5.14 85.24 0.44 2.21 16 3 Si 0.98 37.47 29.60 68.60 2.03 39.50 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 6 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.50 -26.57 9.04 23.40 0.21 -26.36 16 8 H 0.07 3.86 7.91 -2.91 -0.02 3.83 16 9 C 0.06 3.05 5.57 -21.28 -0.12 2.93 16 10 C -0.15 -7.76 8.64 22.49 0.19 -7.57 16 11 C -0.17 -7.47 8.96 22.11 0.20 -7.27 16 12 C -0.01 -0.37 6.71 22.79 0.15 -0.22 16 13 O -0.33 -13.82 9.65 -70.79 -0.68 -14.50 16 14 C 0.05 1.44 3.56 71.24 0.25 1.69 16 15 C 0.52 16.18 7.76 87.66 0.68 16.86 16 16 O -0.57 -22.83 15.91 16.01 0.25 -22.57 16 17 N -0.60 -13.61 2.72 -792.18 -2.15 -15.76 16 18 C 0.06 0.92 6.28 86.58 0.54 1.46 16 19 C 0.05 0.64 7.03 72.29 0.51 1.15 16 20 O -0.38 -6.29 10.00 -148.98 -1.49 -7.78 16 21 C 0.08 1.30 3.97 31.84 0.13 1.43 16 22 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 23 C -0.11 -1.36 6.43 31.83 0.20 -1.15 16 24 C -0.11 -1.40 6.71 31.39 0.21 -1.19 16 25 C -0.13 -2.22 6.40 31.18 0.20 -2.02 16 26 C 0.10 2.14 3.04 45.80 0.14 2.28 16 27 H 0.09 2.24 7.06 -2.39 -0.02 2.22 16 28 C -0.12 -5.77 9.92 22.11 0.22 -5.55 16 29 C -0.21 -10.39 9.74 22.49 0.22 -10.18 16 30 H 0.29 13.13 8.30 -92.71 -0.77 12.37 16 31 H 0.11 5.87 6.17 -2.91 -0.02 5.85 16 32 H 0.13 4.62 6.27 -2.91 -0.02 4.61 16 33 H 0.10 2.74 7.49 -2.38 -0.02 2.72 16 34 H 0.10 2.72 7.13 -2.39 -0.02 2.71 16 35 H 0.10 1.25 7.48 -2.38 -0.02 1.23 16 36 H 0.11 1.42 5.97 -2.38 -0.01 1.41 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.23 7.16 -2.38 -0.02 1.21 16 45 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 46 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -69.02 367.24 3.57 -65.45 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.99 Total: 28.84 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 4.38 Total: -31.49 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -1.91 Total: -57.46 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.92 Total: -44.85 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -69.02 3.57 -65.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071830068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.422 kcal (2) G-P(sol) polarization free energy of solvation -69.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds