Wall clock time and date at job start Tue Mar 31 2020 05:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48496 * 109.47271 * 239.99981 * 3 2 1 5 5 H 1.48503 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47126 * 119.99879 * 3 2 1 7 7 C 1.39897 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99935 * 197.92452 * 7 2 1 9 9 C 1.41216 * 119.99659 * 17.92568 * 7 2 1 10 10 C 1.40829 * 120.18360 * 24.54129 * 9 7 2 11 11 C 1.36435 * 119.81238 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18831 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81730 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99857 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.46993 * 179.97438 * 14 13 12 16 16 O 1.21271 * 120.00270 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99543 * 179.97438 * 15 14 13 18 18 C 1.45926 * 117.98316 * 0.02562 * 17 15 14 19 19 C 1.53357 * 108.44670 * 205.13701 * 18 17 15 20 20 O 1.42631 * 107.69210 * 304.12951 * 19 18 17 21 21 C 1.41232 * 116.43711 * 65.83898 * 20 19 18 22 22 H 1.09005 * 108.70709 * 83.67089 * 21 20 19 23 23 C 1.54691 * 109.47932 * 202.15208 * 21 20 19 24 24 C 1.55139 * 103.73774 * 148.87921 * 23 21 20 25 25 C 1.55212 * 102.15567 * 320.87677 * 24 23 21 26 26 C 1.44369 * 117.97796 * 179.73457 * 17 15 14 27 27 H 1.09004 * 108.13787 * 59.98080 * 26 17 15 28 28 C 1.39312 * 120.35986 * 0.25284 * 12 11 10 29 29 C 1.36436 * 120.18705 * 359.48591 * 28 12 11 30 30 H 0.96997 * 119.99623 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.08891 * 0.04472 * 10 9 7 32 32 H 1.08002 * 119.90502 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.47080 * 59.99552 * 14 13 12 34 34 H 1.09000 * 109.46757 * 300.00089 * 14 13 12 35 35 H 1.08997 * 109.64021 * 324.83008 * 18 17 15 36 36 H 1.09004 * 109.64422 * 85.24255 * 18 17 15 37 37 H 1.09001 * 109.80811 * 63.67749 * 19 18 17 38 38 H 1.09000 * 109.81867 * 184.51526 * 19 18 17 39 39 H 1.09003 * 110.56805 * 267.44269 * 23 21 20 40 40 H 1.08994 * 110.56817 * 30.31699 * 23 21 20 41 41 H 1.09001 * 110.86315 * 79.04120 * 24 23 21 42 42 H 1.08993 * 110.86496 * 202.50244 * 24 23 21 43 43 H 1.09007 * 110.61620 * 158.12680 * 25 24 23 44 44 H 1.08997 * 110.61965 * 280.96933 * 25 24 23 45 45 H 1.08003 * 119.90138 * 179.72194 * 28 12 11 46 46 H 1.08003 * 120.09522 * 180.25979 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6963 -1.2124 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2344 0.2873 9 6 1.3535 -2.4046 -0.3775 10 6 0.2243 -2.3575 -1.2177 11 6 -0.4028 -3.5148 -1.5767 12 6 0.0707 -4.7407 -1.1142 13 8 -0.5590 -5.8868 -1.4755 14 6 -0.0230 -7.1097 -0.9663 15 6 -0.8465 -8.2671 -1.4694 16 8 -1.7989 -8.0648 -2.1924 17 7 -0.5246 -9.5272 -1.1158 18 6 0.6295 -9.7200 -0.2437 19 6 1.1828 -11.1313 -0.4760 20 8 0.1196 -12.0557 -0.2540 21 6 -0.9606 -12.0016 -1.1622 22 1 -0.7058 -12.5894 -2.0440 23 6 -2.2183 -12.6177 -0.5052 24 6 -3.3916 -11.8299 -1.1451 25 6 -2.8206 -10.3881 -1.2094 26 6 -1.3466 -10.6026 -1.6179 27 1 -1.3080 -10.5791 -2.7070 28 6 1.1836 -4.7956 -0.2781 29 6 1.8254 -3.6480 0.0861 30 1 -0.4849 0.8401 0.0004 31 1 -0.1440 -1.4080 -1.5770 32 1 -1.2686 -3.4805 -2.2213 33 1 -0.0492 -7.0921 0.1233 34 1 1.0074 -7.2229 -1.3031 35 1 1.3957 -8.9822 -0.4816 36 1 0.3249 -9.6093 0.7970 37 1 1.5440 -11.2225 -1.5004 38 1 1.9969 -11.3285 0.2215 39 1 -2.2941 -13.6787 -0.7436 40 1 -2.1993 -12.4670 0.5741 41 1 -3.6119 -12.2052 -2.1445 42 1 -4.2782 -11.8720 -0.5125 43 1 -3.3462 -9.8004 -1.9622 44 1 -2.8849 -9.9060 -0.2340 45 1 1.5416 -5.7496 0.0798 46 1 2.6906 -3.6926 0.7310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071830069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:42 Heat of formation + Delta-G solvation = -88.057893 kcal Electronic energy + Delta-G solvation = -28083.784393 eV Core-core repulsion = 24131.675482 eV Total energy + Delta-G solvation = -3952.108910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.19439 -39.23339 -38.28719 -36.54809 -36.23053 -35.18833 -33.35579 -30.32961 -30.07497 -29.32142 -28.93507 -28.03037 -26.63226 -24.71954 -23.56796 -21.80362 -21.27513 -20.78056 -20.39012 -18.84405 -17.91519 -17.55307 -17.28072 -16.85500 -16.44216 -15.91591 -15.46353 -15.22555 -15.06505 -14.79063 -14.63786 -14.33299 -13.99984 -13.80712 -13.26031 -13.11093 -12.93999 -12.52689 -12.37134 -12.21097 -12.09814 -11.79034 -11.77435 -11.54869 -11.46384 -11.25942 -11.12464 -11.05225 -10.94458 -10.85330 -10.68965 -10.17822 -10.05654 -9.88041 -9.59353 -9.33217 -9.04988 -8.85798 -7.67867 -7.07850 -6.74879 -4.28595 2.44095 2.53696 2.76308 2.91929 3.07000 3.09015 3.20125 3.27549 3.88269 3.93440 4.14419 4.20209 4.37678 4.53954 4.58825 4.69849 4.77132 4.83562 4.91558 5.02708 5.10034 5.14722 5.24333 5.27904 5.29541 5.36939 5.43138 5.57095 5.64157 5.64894 5.75548 5.98093 5.99967 6.02225 6.18007 6.33347 6.67432 6.88440 6.93669 7.02572 7.08741 7.15152 7.41892 7.52215 7.73799 7.97483 8.07997 8.17778 8.39452 8.61094 8.86944 8.94924 10.19596 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.002181 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.609437 B =12833.062322 C =13459.633304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.090 3.910 10 C -0.134 4.134 11 C -0.114 4.114 12 C -0.014 4.014 13 O -0.304 6.304 14 C 0.054 3.946 15 C 0.514 3.486 16 O -0.507 6.507 17 N -0.604 5.604 18 C 0.069 3.931 19 C 0.056 3.944 20 O -0.374 6.374 21 C 0.093 3.907 22 H 0.065 0.935 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.129 4.129 26 C 0.120 3.880 27 H 0.075 0.925 28 C -0.167 4.167 29 C -0.199 4.199 30 H 0.281 0.719 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -21.908 -0.309 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.133 4.133 12 C -0.057 4.057 13 O -0.219 6.219 14 C -0.025 4.025 15 C 0.301 3.699 16 O -0.380 6.380 17 N -0.342 5.342 18 C -0.054 4.054 19 C -0.021 4.021 20 O -0.292 6.292 21 C 0.035 3.965 22 H 0.083 0.917 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.168 4.168 26 C 0.016 3.984 27 H 0.093 0.907 28 C -0.186 4.186 29 C -0.219 4.219 30 H 0.092 0.908 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.272 -21.781 -0.677 21.829 hybrid contribution 0.705 0.931 0.106 1.173 sum -0.568 -20.850 -0.571 20.865 Atomic orbital electron populations 1.69823 1.07524 1.29344 1.35565 1.25894 0.94731 1.01275 0.92355 0.86370 0.80125 0.80313 0.79913 1.18858 1.20371 1.19085 1.19437 0.98093 0.91244 1.40513 0.90522 1.17603 0.91784 0.92136 0.89745 1.20988 0.98502 0.96280 0.99519 1.19841 1.00750 0.90033 1.02664 1.18621 0.97248 0.84433 1.05356 1.85936 1.54157 1.11293 1.70470 1.22130 0.96667 0.84507 0.99204 1.20514 0.85282 0.83332 0.80749 1.90699 1.27995 1.84156 1.35145 1.47043 1.30336 1.05731 1.51054 1.22331 0.88533 0.99314 0.95247 1.22897 0.89787 0.87077 1.02325 1.87404 1.29624 1.57993 1.54220 1.22371 0.87774 0.93628 0.92761 0.91690 1.22640 0.91990 0.99541 1.01361 1.22574 0.97536 0.95017 1.01201 1.22893 0.94011 0.96948 1.02921 1.21274 0.91384 0.86823 0.98966 0.90657 1.20365 0.97938 0.97779 1.02496 1.20542 1.03184 0.92471 1.05667 0.90781 0.85575 0.88280 0.90129 0.90222 0.88923 0.90321 0.92198 0.86807 0.90554 0.90121 0.90915 0.90527 0.89545 0.91129 0.88931 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.57 10.96 55.55 0.61 -19.96 16 2 C 0.07 1.86 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.14 9.04 -37.83 -0.34 -12.48 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 9 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 10 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 11 C -0.11 -2.81 9.92 -39.83 -0.40 -3.20 16 12 C -0.01 -0.31 6.71 -38.78 -0.26 -0.57 16 13 O -0.30 -6.54 9.65 -38.64 -0.37 -6.92 16 14 C 0.05 0.87 3.74 36.00 0.13 1.00 16 15 C 0.51 7.99 7.36 -10.99 -0.08 7.91 16 16 O -0.51 -9.74 14.69 -14.35 -0.21 -9.95 16 17 N -0.60 -7.15 2.99 -167.53 -0.50 -7.65 16 18 C 0.07 0.59 6.03 -4.17 -0.03 0.57 16 19 C 0.06 0.41 7.00 37.34 0.26 0.67 16 20 O -0.37 -3.51 10.18 -35.01 -0.36 -3.86 16 21 C 0.09 0.83 3.62 -26.29 -0.10 0.73 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 C -0.12 -0.90 6.54 -24.71 -0.16 -1.06 16 24 C -0.13 -0.98 6.94 -24.43 -0.17 -1.15 16 25 C -0.13 -1.43 5.25 -24.79 -0.13 -1.56 16 26 C 0.12 1.30 2.74 -68.75 -0.19 1.12 16 27 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 28 C -0.17 -3.65 8.96 -39.83 -0.36 -4.01 16 29 C -0.20 -4.77 9.74 -39.25 -0.38 -5.15 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 32 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.08 1.16 7.55 -51.93 -0.39 0.77 16 34 H 0.08 1.10 6.80 -51.93 -0.35 0.75 16 35 H 0.09 0.68 6.41 -51.93 -0.33 0.35 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 1.12 7.25 -51.93 -0.38 0.74 16 44 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 45 H 0.09 1.66 6.27 -52.48 -0.33 1.33 16 46 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -31.36 366.45 -10.28 -41.65 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.73 Total: 5.14 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -3.22 Total: -17.47 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.11 Total: -27.61 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.94 Total: -20.73 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.36 -10.28 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071830069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.412 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds