Wall clock time and date at job start Tue Mar 31 2020 05:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86792 * 120.00275 * 2 1 4 4 H 1.48505 * 109.47008 * 270.00061 * 3 2 1 5 5 H 1.48496 * 109.47289 * 29.99958 * 3 2 1 6 6 H 1.48501 * 109.47354 * 150.00369 * 3 2 1 7 7 C 1.39894 * 119.99499 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99770 * 161.93311 * 7 2 1 9 9 C 1.41217 * 120.00109 * 342.20663 * 7 2 1 10 10 C 1.40834 * 120.17893 * 335.28256 * 9 7 2 11 11 C 1.36441 * 119.80910 * 179.73855 * 10 9 7 12 12 C 1.39305 * 120.18301 * 0.56391 * 11 10 9 13 13 O 1.35679 * 119.81629 * 179.71436 * 12 11 10 14 14 C 1.42896 * 116.99986 * 359.97438 * 13 12 11 15 15 C 1.50702 * 109.47156 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00314 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.48092 * 122.62843 * 0.02562 * 17 15 14 19 19 C 1.52761 * 110.76283 * 131.16776 * 18 17 15 20 20 O 1.43962 * 111.84424 * 45.30963 * 19 18 17 21 21 C 1.40821 * 111.21797 * 302.43062 * 20 19 18 22 22 H 1.09003 * 109.03063 * 311.05730 * 21 20 19 23 23 C 1.51970 * 119.44414 * 184.87633 * 21 20 19 24 24 C 1.55073 * 105.14962 * 210.92956 * 23 21 20 25 25 C 1.55440 * 106.29606 * 3.77283 * 24 23 21 26 26 C 1.45865 * 122.62653 * 179.71123 * 17 15 14 27 27 H 1.08999 * 110.79631 * 117.59836 * 26 17 15 28 28 C 1.39311 * 120.36861 * 359.68692 * 12 11 10 29 29 C 1.36440 * 120.18274 * 0.02694 * 28 12 11 30 30 H 0.97003 * 119.99355 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.09378 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.90912 * 180.27492 * 11 10 9 33 33 H 1.08997 * 109.47443 * 299.99804 * 14 13 12 34 34 H 1.09008 * 109.47256 * 60.00267 * 14 13 12 35 35 H 1.09001 * 109.21568 * 251.49691 * 18 17 15 36 36 H 1.09000 * 109.22214 * 10.87717 * 18 17 15 37 37 H 1.09003 * 109.00856 * 165.91752 * 19 18 17 38 38 H 1.09002 * 109.00847 * 284.77657 * 19 18 17 39 39 H 1.09005 * 110.30691 * 329.84329 * 23 21 20 40 40 H 1.08997 * 110.30913 * 91.91440 * 23 21 20 41 41 H 1.08995 * 110.08987 * 122.97929 * 24 23 21 42 42 H 1.09001 * 110.08751 * 244.56427 * 24 23 21 43 43 H 1.09005 * 110.73353 * 142.50884 * 25 24 23 44 44 H 1.08997 * 110.73712 * 265.82302 * 25 24 23 45 45 H 1.08004 * 119.90811 * 180.02562 * 28 12 11 46 46 H 1.07996 * 120.09193 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4400 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0483 -1.2348 -0.2895 9 6 1.3527 -2.4051 0.3748 10 6 0.2240 -2.3591 1.2158 11 6 -0.4067 -3.5165 1.5684 12 6 0.0698 -4.7420 1.1083 13 8 -0.5597 -5.8888 1.4682 14 6 -1.7009 -5.7629 2.3189 15 6 -2.2634 -7.1302 2.6105 16 8 -1.7390 -8.1155 2.1361 17 7 -3.3494 -7.2581 3.3985 18 6 -4.0356 -6.0956 4.0073 19 6 -5.5430 -6.1721 3.7715 20 8 -6.0596 -7.4905 4.0312 21 6 -5.4158 -8.4563 3.2339 22 1 -5.4080 -8.1148 2.1988 23 6 -5.8934 -9.8984 3.2757 24 6 -4.6275 -10.7525 3.0058 25 6 -3.4394 -9.7545 2.9137 26 6 -3.9447 -8.5521 3.7132 27 1 -3.8968 -8.7500 4.7839 28 6 1.1888 -4.7966 0.2803 29 6 1.8276 -3.6481 -0.0863 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1440 -1.4101 1.5769 32 1 -1.2751 -3.4828 2.2096 33 1 -1.4067 -5.2847 3.2532 34 1 -2.4586 -5.1560 1.8230 35 1 -3.8403 -6.0848 5.0796 36 1 -3.6497 -5.1780 3.5631 37 1 -6.0418 -5.4596 4.4286 38 1 -5.7542 -5.9070 2.7355 39 1 -6.3051 -10.1322 4.2576 40 1 -6.6408 -10.0720 2.5016 41 1 -4.4661 -11.4521 3.8259 42 1 -4.7350 -11.2946 2.0663 43 1 -2.5439 -10.1775 3.3691 44 1 -3.2509 -9.4736 1.8775 45 1 1.5517 -5.7508 -0.0724 46 1 2.6947 -3.6921 -0.7285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071830070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:46 Heat of formation + Delta-G solvation = -82.718306 kcal Electronic energy + Delta-G solvation = -28196.755466 eV Core-core repulsion = 24244.878097 eV Total energy + Delta-G solvation = -3951.877369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.15284 -39.21796 -38.22758 -36.57639 -36.22299 -35.01235 -33.39317 -30.10982 -29.94904 -29.62454 -28.85849 -28.02764 -26.40748 -24.71265 -23.40704 -22.07879 -21.24575 -20.72680 -20.55734 -19.15997 -17.51851 -17.29165 -17.14579 -16.61008 -16.20837 -16.18203 -15.46539 -15.31690 -15.06314 -14.84808 -14.65665 -14.10169 -13.98826 -13.56043 -13.34610 -13.16423 -12.86920 -12.77482 -12.42127 -12.08933 -11.97239 -11.87604 -11.73179 -11.53451 -11.47782 -11.31189 -11.15770 -11.05468 -10.98392 -10.76866 -10.66399 -10.34692 -10.03452 -9.85416 -9.52149 -9.31206 -9.05784 -8.69741 -7.70932 -7.07248 -6.78129 -4.29825 2.48123 2.53767 2.72190 2.92264 3.05168 3.08961 3.18161 3.20908 3.87973 3.91740 4.21333 4.35427 4.49188 4.56569 4.63409 4.64987 4.70451 4.86315 4.99842 5.08084 5.13907 5.17414 5.25617 5.29527 5.31727 5.39754 5.46758 5.60152 5.62903 5.70492 5.73691 6.00366 6.01154 6.02098 6.23797 6.35554 6.63236 6.74588 6.84095 7.01851 7.13616 7.22829 7.35130 7.50936 7.83233 7.95010 8.07442 8.12713 8.37610 8.58956 8.85519 8.93679 10.16814 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.002365 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.033427 B =11835.644565 C =12768.770605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.089 3.911 10 C -0.135 4.135 11 C -0.174 4.174 12 C -0.015 4.015 13 O -0.304 6.304 14 C 0.053 3.947 15 C 0.525 3.475 16 O -0.507 6.507 17 N -0.615 5.615 18 C 0.072 3.928 19 C 0.048 3.952 20 O -0.363 6.363 21 C 0.064 3.936 22 H 0.060 0.940 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.112 4.112 26 C 0.105 3.895 27 H 0.087 0.913 28 C -0.106 4.106 29 C -0.196 4.196 30 H 0.279 0.721 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 -11.626 9.034 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.154 4.154 11 C -0.193 4.193 12 C -0.058 4.058 13 O -0.219 6.219 14 C -0.026 4.026 15 C 0.313 3.687 16 O -0.381 6.381 17 N -0.352 5.352 18 C -0.051 4.051 19 C -0.030 4.030 20 O -0.281 6.281 21 C 0.005 3.995 22 H 0.078 0.922 23 C -0.147 4.147 24 C -0.162 4.162 25 C -0.150 4.150 26 C 0.001 3.999 27 H 0.105 0.895 28 C -0.125 4.125 29 C -0.215 4.215 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.151 -12.207 8.799 19.984 hybrid contribution 0.265 1.345 -0.006 1.371 sum -12.886 -10.862 8.793 19.009 Atomic orbital electron populations 1.69841 1.07542 1.29099 1.36054 1.25886 0.94724 1.01279 0.92309 0.86334 0.80656 0.80650 0.79218 1.19531 1.20161 1.18486 1.19478 0.98164 0.91187 1.40297 0.90431 1.17606 0.91795 0.92181 0.89773 1.20928 0.98535 0.96431 0.99553 1.20557 1.01327 0.92889 1.04485 1.18594 0.97866 0.83454 1.05867 1.85910 1.40643 1.30655 1.64682 1.22111 0.90460 0.93783 0.96267 1.20373 0.79156 0.91369 0.77763 1.90702 1.58254 1.39466 1.49662 1.47994 1.29362 1.07219 1.50633 1.22474 0.93233 0.89522 0.99823 1.23034 0.92790 0.84831 1.02322 1.87840 1.61354 1.15836 1.63115 1.22561 0.91295 0.91067 0.94610 0.92222 1.21763 0.98325 0.91406 1.03218 1.22594 0.93449 0.97778 1.02401 1.22321 0.97319 0.93039 1.02298 1.22418 0.93307 0.84179 1.00014 0.89496 1.19621 0.95210 0.97835 0.99849 1.20612 1.03179 0.92143 1.05594 0.90974 0.86035 0.88940 0.90179 0.90255 0.90158 0.88338 0.87092 0.92194 0.90440 0.90586 0.91079 0.90915 0.90445 0.89072 0.88303 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.20 10.96 55.55 0.61 -19.59 16 2 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.46 -12.06 9.04 -37.83 -0.34 -12.40 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.09 2.34 5.57 -106.81 -0.60 1.74 16 10 C -0.14 -3.41 8.64 -39.25 -0.34 -3.75 16 11 C -0.17 -3.93 8.96 -39.83 -0.36 -4.29 16 12 C -0.01 -0.34 6.71 -38.79 -0.26 -0.60 16 13 O -0.30 -6.50 9.65 -38.65 -0.37 -6.88 16 14 C 0.05 0.86 3.67 36.01 0.13 0.99 16 15 C 0.53 8.18 7.78 -10.98 -0.09 8.10 16 16 O -0.51 -9.56 13.54 -14.35 -0.19 -9.76 16 17 N -0.61 -7.37 2.97 -164.23 -0.49 -7.86 16 18 C 0.07 0.63 6.48 -3.29 -0.02 0.60 16 19 C 0.05 0.38 6.80 37.03 0.25 0.63 16 20 O -0.36 -3.68 10.87 -34.57 -0.38 -4.06 16 21 C 0.06 0.64 2.84 -26.19 -0.07 0.56 16 22 H 0.06 0.66 7.93 -51.93 -0.41 0.25 16 23 C -0.11 -0.87 6.77 -26.16 -0.18 -1.05 16 24 C -0.12 -1.00 6.89 -24.34 -0.17 -1.17 16 25 C -0.11 -1.26 4.83 -25.44 -0.12 -1.39 16 26 C 0.10 1.15 3.30 -67.22 -0.22 0.93 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 C -0.11 -2.51 9.92 -39.83 -0.40 -2.91 16 29 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16 30 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 31 H 0.12 3.13 6.17 -52.49 -0.32 2.80 16 32 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 33 H 0.08 1.16 7.60 -51.93 -0.39 0.76 16 34 H 0.08 1.16 7.22 -51.92 -0.38 0.78 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.76 6.31 -51.93 -0.33 0.43 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.47 8.06 -51.93 -0.42 0.06 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 44 H 0.09 1.26 6.52 -51.93 -0.34 0.92 16 45 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 46 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -30.89 365.48 -10.29 -41.17 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.69 Total: 5.59 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -3.25 Total: -17.43 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.12 Total: -27.45 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.94 Total: -20.69 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.89 -10.29 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071830070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.544 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds