Wall clock time and date at job start Tue Mar 31 2020 05:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86792 * 120.00275 * 2 1 4 4 H 1.48505 * 109.47008 * 270.00061 * 3 2 1 5 5 H 1.48496 * 109.47289 * 29.99958 * 3 2 1 6 6 H 1.48501 * 109.47354 * 150.00369 * 3 2 1 7 7 C 1.39894 * 119.99499 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99770 * 161.93311 * 7 2 1 9 9 C 1.41217 * 120.00109 * 342.20663 * 7 2 1 10 10 C 1.40834 * 120.17893 * 335.28256 * 9 7 2 11 11 C 1.36441 * 119.80910 * 179.73855 * 10 9 7 12 12 C 1.39305 * 120.18301 * 0.56391 * 11 10 9 13 13 O 1.35679 * 119.81629 * 179.71436 * 12 11 10 14 14 C 1.42896 * 116.99986 * 359.97438 * 13 12 11 15 15 C 1.50702 * 109.47156 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00314 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.48092 * 122.62843 * 0.02562 * 17 15 14 19 19 C 1.52761 * 110.76283 * 131.16776 * 18 17 15 20 20 O 1.43962 * 111.84424 * 45.30963 * 19 18 17 21 21 C 1.40821 * 111.21797 * 302.43062 * 20 19 18 22 22 H 1.09003 * 109.03063 * 311.05730 * 21 20 19 23 23 C 1.51970 * 119.44414 * 184.87633 * 21 20 19 24 24 C 1.55073 * 105.14962 * 210.92956 * 23 21 20 25 25 C 1.55440 * 106.29606 * 3.77283 * 24 23 21 26 26 C 1.45865 * 122.62653 * 179.71123 * 17 15 14 27 27 H 1.08999 * 110.79631 * 117.59836 * 26 17 15 28 28 C 1.39311 * 120.36861 * 359.68692 * 12 11 10 29 29 C 1.36440 * 120.18274 * 0.02694 * 28 12 11 30 30 H 0.97003 * 119.99355 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.09378 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.90912 * 180.27492 * 11 10 9 33 33 H 1.08997 * 109.47443 * 299.99804 * 14 13 12 34 34 H 1.09008 * 109.47256 * 60.00267 * 14 13 12 35 35 H 1.09001 * 109.21568 * 251.49691 * 18 17 15 36 36 H 1.09000 * 109.22214 * 10.87717 * 18 17 15 37 37 H 1.09003 * 109.00856 * 165.91752 * 19 18 17 38 38 H 1.09002 * 109.00847 * 284.77657 * 19 18 17 39 39 H 1.09005 * 110.30691 * 329.84329 * 23 21 20 40 40 H 1.08997 * 110.30913 * 91.91440 * 23 21 20 41 41 H 1.08995 * 110.08987 * 122.97929 * 24 23 21 42 42 H 1.09001 * 110.08751 * 244.56427 * 24 23 21 43 43 H 1.09005 * 110.73353 * 142.50884 * 25 24 23 44 44 H 1.08997 * 110.73712 * 265.82302 * 25 24 23 45 45 H 1.08004 * 119.90811 * 180.02562 * 28 12 11 46 46 H 1.07996 * 120.09193 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4400 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0483 -1.2348 -0.2895 9 6 1.3527 -2.4051 0.3748 10 6 0.2240 -2.3591 1.2158 11 6 -0.4067 -3.5165 1.5684 12 6 0.0698 -4.7420 1.1083 13 8 -0.5597 -5.8888 1.4682 14 6 -1.7009 -5.7629 2.3189 15 6 -2.2634 -7.1302 2.6105 16 8 -1.7390 -8.1155 2.1361 17 7 -3.3494 -7.2581 3.3985 18 6 -4.0356 -6.0956 4.0073 19 6 -5.5430 -6.1721 3.7715 20 8 -6.0596 -7.4905 4.0312 21 6 -5.4158 -8.4563 3.2339 22 1 -5.4080 -8.1148 2.1988 23 6 -5.8934 -9.8984 3.2757 24 6 -4.6275 -10.7525 3.0058 25 6 -3.4394 -9.7545 2.9137 26 6 -3.9447 -8.5521 3.7132 27 1 -3.8968 -8.7500 4.7839 28 6 1.1888 -4.7966 0.2803 29 6 1.8276 -3.6481 -0.0863 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1440 -1.4101 1.5769 32 1 -1.2751 -3.4828 2.2096 33 1 -1.4067 -5.2847 3.2532 34 1 -2.4586 -5.1560 1.8230 35 1 -3.8403 -6.0848 5.0796 36 1 -3.6497 -5.1780 3.5631 37 1 -6.0418 -5.4596 4.4286 38 1 -5.7542 -5.9070 2.7355 39 1 -6.3051 -10.1322 4.2576 40 1 -6.6408 -10.0720 2.5016 41 1 -4.4661 -11.4521 3.8259 42 1 -4.7350 -11.2946 2.0663 43 1 -2.5439 -10.1775 3.3691 44 1 -3.2509 -9.4736 1.8775 45 1 1.5517 -5.7508 -0.0724 46 1 2.6947 -3.6921 -0.7285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071830070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:45 Heat of formation + Delta-G solvation = -99.605904 kcal Electronic energy + Delta-G solvation = -28197.487767 eV Core-core repulsion = 24244.878097 eV Total energy + Delta-G solvation = -3952.609670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.09031 -40.68139 -39.57421 -38.05111 -37.22253 -35.99972 -35.23777 -31.64272 -31.38528 -30.80113 -30.21878 -28.96689 -27.49237 -26.48027 -24.15242 -23.33142 -22.91301 -22.15426 -21.44407 -20.29033 -19.29546 -18.89607 -18.05080 -17.58145 -17.38344 -17.32881 -17.03152 -16.33668 -16.16208 -15.83221 -15.77475 -15.76337 -15.06795 -14.82146 -14.69417 -14.46460 -14.19597 -13.96210 -13.77022 -13.55104 -13.36200 -13.25810 -12.82623 -12.78218 -12.73673 -12.63361 -12.32202 -12.29572 -12.01373 -11.77021 -11.74103 -11.65071 -11.54374 -11.30834 -11.16303 -10.88938 -10.51894 -9.62310 -9.58444 -8.94786 -8.61597 -6.23570 0.91783 1.02884 1.35596 1.40959 1.42449 1.49690 1.56377 2.23379 2.52279 2.63989 2.71195 3.25843 3.45146 3.68899 3.69756 3.78974 3.89270 3.94952 4.04912 4.09633 4.21703 4.24762 4.28376 4.31704 4.38486 4.39894 4.43089 4.57422 4.73358 4.78745 4.82944 4.93749 4.97420 4.99094 5.06209 5.14182 5.16837 5.25613 5.35773 5.44882 5.50592 5.63744 5.93830 6.02531 6.04513 6.10928 6.22244 6.53206 6.73728 6.94300 6.95678 7.06626 8.35606 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.002365 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.033427 B =11835.644565 C =12768.770605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.057 3.943 10 C -0.153 4.153 11 C -0.169 4.169 12 C -0.008 4.008 13 O -0.324 6.324 14 C 0.046 3.954 15 C 0.523 3.477 16 O -0.551 6.551 17 N -0.608 5.608 18 C 0.065 3.935 19 C 0.045 3.955 20 O -0.372 6.372 21 C 0.070 3.930 22 H 0.044 0.956 23 C -0.105 4.105 24 C -0.115 4.115 25 C -0.113 4.113 26 C 0.097 3.903 27 H 0.097 0.903 28 C -0.120 4.120 29 C -0.207 4.207 30 H 0.288 0.712 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.141 0.859 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 -11.143 10.530 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.093 0.907 9 C 0.055 3.945 10 C -0.173 4.173 11 C -0.187 4.187 12 C -0.052 4.052 13 O -0.239 6.239 14 C -0.033 4.033 15 C 0.312 3.688 16 O -0.429 6.429 17 N -0.343 5.343 18 C -0.057 4.057 19 C -0.032 4.032 20 O -0.290 6.290 21 C 0.011 3.989 22 H 0.062 0.938 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.007 4.007 27 H 0.115 0.885 28 C -0.139 4.139 29 C -0.227 4.227 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.130 0.870 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.938 -11.727 10.325 21.617 hybrid contribution 0.702 1.084 -0.419 1.358 sum -14.236 -10.643 9.905 20.348 Atomic orbital electron populations 1.69874 1.08809 1.30520 1.36142 1.26694 0.95527 1.04307 0.91303 0.85229 0.79134 0.76110 0.79388 1.18943 1.18899 1.18481 1.19717 0.98390 0.92404 1.42234 0.90725 1.17973 0.92842 0.92959 0.90739 1.20947 0.99044 0.96989 1.00302 1.20819 1.01933 0.91776 1.04214 1.18695 0.97452 0.84183 1.04854 1.85882 1.42330 1.29988 1.65691 1.22439 0.89314 0.94928 0.96575 1.20329 0.79864 0.90551 0.78098 1.90695 1.59982 1.40465 1.51724 1.48057 1.28144 1.08915 1.49218 1.22806 0.93528 0.88599 1.00761 1.23230 0.92317 0.84491 1.03143 1.87837 1.61511 1.16588 1.63065 1.22538 0.90519 0.92185 0.93672 0.93780 1.21793 0.98306 0.89851 1.04334 1.22558 0.92024 0.97243 1.03482 1.22213 0.98248 0.94300 1.00312 1.22615 0.94006 0.83621 1.00415 0.88499 1.19863 0.95721 0.98090 1.00204 1.20769 1.03716 0.92202 1.05989 0.90097 0.86929 0.85296 0.87916 0.88337 0.88295 0.87141 0.84159 0.92343 0.89239 0.89462 0.89428 0.90303 0.91857 0.92096 0.87046 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.94 10.96 21.82 0.24 -41.70 16 2 C 0.04 1.78 5.13 85.23 0.44 2.22 16 3 Si 0.98 37.42 29.60 68.60 2.03 39.45 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.50 -26.61 9.04 23.40 0.21 -26.40 16 8 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 9 C 0.06 3.07 5.57 -21.28 -0.12 2.95 16 10 C -0.15 -7.81 8.64 22.49 0.19 -7.61 16 11 C -0.17 -7.49 8.96 22.11 0.20 -7.30 16 12 C -0.01 -0.38 6.71 22.79 0.15 -0.23 16 13 O -0.32 -13.67 9.65 -70.94 -0.68 -14.35 16 14 C 0.05 1.41 3.67 71.24 0.26 1.67 16 15 C 0.52 16.06 7.78 87.66 0.68 16.74 16 16 O -0.55 -21.30 13.54 16.01 0.22 -21.08 16 17 N -0.61 -13.78 2.97 -791.88 -2.35 -16.13 16 18 C 0.06 0.94 6.48 85.99 0.56 1.50 16 19 C 0.04 0.58 6.80 71.90 0.49 1.07 16 20 O -0.37 -6.59 10.87 -146.63 -1.59 -8.19 16 21 C 0.07 1.29 2.84 30.94 0.09 1.38 16 22 H 0.04 0.94 7.93 -2.39 -0.02 0.92 16 23 C -0.11 -1.46 6.77 30.96 0.21 -1.25 16 24 C -0.12 -1.70 6.89 32.14 0.22 -1.48 16 25 C -0.11 -2.56 4.83 31.43 0.15 -2.40 16 26 C 0.10 2.03 3.30 45.79 0.15 2.18 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 C -0.12 -5.72 9.92 22.11 0.22 -5.50 16 29 C -0.21 -10.43 9.74 22.48 0.22 -10.21 16 30 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 31 H 0.11 5.86 6.17 -2.91 -0.02 5.84 16 32 H 0.13 4.62 6.27 -2.91 -0.02 4.60 16 33 H 0.10 2.70 7.60 -2.39 -0.02 2.68 16 34 H 0.10 2.65 7.22 -2.38 -0.02 2.63 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.34 6.31 -2.39 -0.02 1.33 16 37 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 0.79 8.06 -2.39 -0.02 0.77 16 39 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.57 8.12 -2.38 -0.02 1.55 16 44 H 0.06 1.76 6.52 -2.39 -0.02 1.75 16 45 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 46 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -68.57 365.48 3.17 -65.40 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.99 Total: 29.27 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.33 Total: -32.66 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -2.11 Total: -57.83 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.06 Total: -43.63 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -68.57 3.17 -65.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071830070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.206 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds