Wall clock time and date at job start Tue Mar 31 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 114.00015 * 2 1 4 4 C 1.53000 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46823 * 183.80461 * 4 3 2 6 6 C 1.50707 * 109.47084 * 303.80215 * 4 3 2 7 7 C 1.38252 * 120.00026 * 78.40024 * 6 4 3 8 8 C 1.38218 * 119.99818 * 179.97438 * 7 6 4 9 9 C 1.38251 * 119.99807 * 0.09021 * 8 7 6 10 10 C 1.38204 * 120.00416 * 359.86312 * 9 8 7 11 11 C 1.50704 * 120.00204 * 180.02562 * 10 9 8 12 12 F 1.39903 * 109.47198 * 270.02699 * 11 10 9 13 13 F 1.39900 * 109.46815 * 30.02777 * 11 10 9 14 14 F 1.39894 * 109.47053 * 150.02561 * 11 10 9 15 15 C 1.38216 * 119.99631 * 258.38241 * 6 4 3 16 16 N 1.46896 * 109.47126 * 63.79847 * 4 3 2 17 17 C 1.46903 * 110.99934 * 54.08263 * 16 4 3 18 18 C 1.46900 * 110.99770 * 178.03059 * 16 4 3 19 19 C 1.53002 * 109.47148 * 170.00600 * 18 16 4 20 20 C 1.50697 * 109.47250 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00260 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00223 * 179.97438 * 20 19 18 23 23 N 1.31524 * 119.99855 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00428 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47297 * 59.99833 * 24 22 20 26 26 H 1.48497 * 109.47584 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47087 * 300.00134 * 24 22 20 28 28 H 1.08998 * 109.46890 * 299.99564 * 1 2 3 29 29 H 1.09003 * 109.46853 * 59.99689 * 1 2 3 30 30 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46799 * 60.00280 * 3 2 1 32 32 H 1.08997 * 109.47164 * 300.00199 * 3 2 1 33 33 H 1.08001 * 120.00336 * 359.69854 * 7 6 4 34 34 H 1.07998 * 119.99542 * 180.02562 * 8 7 6 35 35 H 1.08001 * 119.99657 * 179.97438 * 9 8 7 36 36 H 1.07994 * 120.00326 * 359.97438 * 15 6 4 37 37 H 1.09001 * 109.47459 * 53.83554 * 17 16 4 38 38 H 1.09004 * 109.47176 * 173.84513 * 17 16 4 39 39 H 1.09007 * 109.46412 * 293.84012 * 17 16 4 40 40 H 1.09006 * 109.47239 * 290.00017 * 18 16 4 41 41 H 1.08998 * 109.47264 * 50.00040 * 18 16 4 42 42 H 1.09001 * 109.46973 * 299.99569 * 19 18 16 43 43 H 1.08998 * 109.47495 * 59.99582 * 19 18 16 44 44 H 0.96998 * 119.99710 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9787 2.1781 0.0675 6 6 3.9743 0.3568 1.1797 7 6 3.8686 -1.0210 1.1353 8 6 4.2716 -1.7803 2.2177 9 6 4.7786 -1.1618 3.3454 10 6 4.8852 0.2154 3.3895 11 6 5.4384 0.8894 4.6186 12 9 4.3936 1.1755 5.5039 13 9 6.3586 0.0398 5.2421 14 9 6.0768 2.0787 4.2508 15 6 4.4828 0.9749 2.3065 16 7 3.9748 0.5366 -1.2436 17 6 3.4452 1.2398 -2.4196 18 6 5.4399 0.4455 -1.3004 19 6 5.8503 -0.4468 -2.4735 20 6 7.3533 -0.5407 -2.5314 21 1 7.9556 -0.0162 -1.8044 22 6 7.9595 -1.2964 -3.5124 23 7 7.2260 -1.9357 -4.3974 24 14 9.8225 -1.4123 -3.5847 25 1 10.3317 -1.9948 -2.3171 26 1 10.2208 -2.2795 -4.7225 27 1 10.3960 -0.0553 -3.7713 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8464 0.8901 32 1 1.6887 1.8464 -0.8899 33 1 3.4670 -1.5038 0.2566 34 1 4.1893 -2.8566 2.1827 35 1 5.0931 -1.7551 4.1913 36 1 4.5661 2.0511 2.3410 37 1 3.7098 2.2957 -2.3614 38 1 3.8724 0.8075 -3.3244 39 1 2.3602 1.1381 -2.4455 40 1 5.8609 1.4417 -1.4370 41 1 5.8137 0.0176 -0.3702 42 1 5.4294 -1.4429 -2.3370 43 1 5.4766 -0.0188 -3.4037 44 1 7.6526 -2.4670 -5.0878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:07 Heat of formation + Delta-G solvation = -164.738524 kcal Electronic energy + Delta-G solvation = -29347.985912 eV Core-core repulsion = 24850.695139 eV Total energy + Delta-G solvation = -4497.290772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.17879 -47.68913 -47.65205 -39.91937 -38.01434 -36.62801 -33.33403 -32.14184 -31.63383 -30.01491 -28.24572 -26.46524 -26.11658 -25.77433 -23.94534 -22.58067 -22.17585 -20.59920 -19.73143 -18.51876 -18.36408 -17.98942 -16.67567 -16.42642 -16.07043 -15.92347 -15.26805 -15.19425 -14.69988 -14.52387 -14.49076 -14.38953 -14.11013 -14.08828 -13.95336 -13.80942 -13.74165 -13.45740 -12.80731 -12.69847 -12.50011 -12.47317 -12.16547 -12.10548 -11.76997 -11.47052 -11.16774 -11.12722 -11.04749 -10.90252 -10.63108 -10.53547 -9.86597 -9.61359 -9.36840 -9.13575 -9.01450 -8.72790 -8.31328 -7.77873 -5.98516 -4.00596 1.11054 1.32477 2.65902 3.34517 3.38850 3.41582 3.57089 3.72125 3.82724 4.01566 4.30170 4.42562 4.52293 4.67222 4.88103 5.05377 5.10027 5.26351 5.31360 5.36782 5.37469 5.41089 5.44646 5.52141 5.58297 5.64556 5.71914 5.87148 5.91283 5.93384 6.18132 6.24383 6.40732 6.48891 6.54208 6.69531 6.92297 6.97501 7.17916 7.44623 7.53046 7.78445 7.90089 8.08430 8.44606 9.06234 9.63022 11.12686 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.004185 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.738876 B = 6689.074527 C = 8817.264103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.071 3.929 4 C 0.122 3.878 5 H 0.059 0.941 6 C -0.070 4.070 7 C -0.025 4.025 8 C -0.128 4.128 9 C -0.074 4.074 10 C -0.194 4.194 11 C 0.510 3.490 12 F -0.181 7.181 13 F -0.179 7.179 14 F -0.179 7.179 15 C -0.072 4.072 16 N -0.525 5.525 17 C 0.023 3.977 18 C 0.060 3.940 19 C 0.031 3.969 20 C -0.521 4.521 21 H 0.052 0.948 22 C 0.060 3.940 23 N -0.893 5.893 24 Si 0.890 3.110 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.278 1.278 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.016 0.984 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.017 0.983 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 5.799 14.872 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.006 4.006 4 C 0.014 3.986 5 H 0.076 0.924 6 C -0.070 4.070 7 C -0.044 4.044 8 C -0.146 4.146 9 C -0.092 4.092 10 C -0.196 4.196 11 C 0.456 3.544 12 F -0.163 7.163 13 F -0.160 7.160 14 F -0.160 7.160 15 C -0.091 4.091 16 N -0.249 5.249 17 C -0.124 4.124 18 C -0.066 4.066 19 C -0.006 4.006 20 C -0.560 4.560 21 H 0.070 0.930 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.718 3.282 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.035 0.965 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.554 5.063 14.738 20.011 hybrid contribution 1.347 1.151 0.147 1.778 sum -11.207 6.214 14.884 19.640 Atomic orbital electron populations 1.22706 0.81994 1.02555 0.99335 1.88036 1.18493 1.26654 1.95164 1.22598 0.92529 0.85566 0.99921 1.20630 0.93071 0.95102 0.89837 0.92365 1.19557 0.98864 0.94659 0.93938 1.21417 0.92109 0.93061 0.97771 1.21221 0.99788 1.00552 0.93052 1.20867 0.96964 0.92372 0.98975 1.19728 1.09969 0.95381 0.94490 1.18360 0.75617 0.76567 0.83876 1.93203 1.58049 1.93796 1.71234 1.93178 1.67753 1.70724 1.84392 1.93182 1.82681 1.48661 1.91507 1.20716 0.96538 0.99772 0.92047 1.62122 1.12658 1.50498 0.99624 1.22450 0.99765 0.95446 0.94790 1.22410 0.83238 0.98967 1.02030 1.19070 0.95318 0.94811 0.91387 1.21142 0.91932 1.29709 1.13232 0.92968 1.24960 0.97983 0.95531 0.95647 1.69961 1.35103 1.31619 1.16549 0.86692 0.85986 0.77971 0.77552 1.20226 1.21281 1.20329 0.94714 0.94424 0.89767 0.93394 0.92567 0.83450 0.84975 0.85297 0.85434 0.96504 0.89824 0.92199 0.96312 0.91880 0.95696 0.96486 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.37 -4.71 8.97 -35.23 -0.32 -5.02 16 3 C 0.07 0.84 5.13 37.16 0.19 1.03 16 4 C 0.12 1.72 2.10 -68.86 -0.14 1.57 16 5 H 0.06 0.78 7.99 -51.93 -0.41 0.36 16 6 C -0.07 -1.00 3.51 -104.62 -0.37 -1.36 16 7 C -0.03 -0.37 7.77 -39.58 -0.31 -0.68 16 8 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 9 C -0.07 -0.92 9.40 -39.59 -0.37 -1.29 16 10 C -0.19 -2.55 5.45 -104.62 -0.57 -3.12 16 11 C 0.51 6.42 3.36 36.01 0.12 6.55 16 12 F -0.18 -2.24 17.30 2.25 0.04 -2.20 16 13 F -0.18 -2.29 16.46 2.25 0.04 -2.25 16 14 F -0.18 -2.34 16.46 2.25 0.04 -2.30 16 15 C -0.07 -0.96 9.02 -39.58 -0.36 -1.32 16 16 N -0.52 -8.94 3.90 -236.28 -0.92 -9.86 16 17 C 0.02 0.37 8.75 60.07 0.53 0.89 16 18 C 0.06 1.23 4.64 -3.82 -0.02 1.22 16 19 C 0.03 0.80 4.92 -27.88 -0.14 0.66 16 20 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 21 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 24 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.62 6.24 -51.93 -0.32 0.29 16 33 H 0.15 2.37 7.40 -52.49 -0.39 1.98 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.35 7.60 -52.49 -0.40 0.95 16 36 H 0.13 1.50 7.57 -52.49 -0.40 1.10 16 37 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 38 H 0.08 1.50 6.08 -51.93 -0.32 1.19 16 39 H 0.06 0.82 6.51 -51.92 -0.34 0.48 16 40 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 41 H 0.06 1.33 6.52 -51.93 -0.34 0.99 16 42 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.02 0.45 6.36 -51.93 -0.33 0.12 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -30.30 370.27 -7.13 -37.43 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.17 Total: -2.31 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.13 Total: -9.86 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.19 Total: -35.75 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.32 Total: -5.02 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.30 -7.13 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.307 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds