Wall clock time and date at job start Tue Mar 31 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 13 3 17 17 C 1.38270 * 119.94279 * 269.72582 * 16 15 13 18 18 C 1.38141 * 120.05541 * 179.72666 * 17 16 15 19 19 C 1.38732 * 119.94181 * 0.56721 * 18 17 16 20 20 O 1.35897 * 120.05770 * 179.68339 * 19 18 17 21 21 C 1.42905 * 116.99869 * 0.02562 * 20 19 18 22 22 F 1.39892 * 109.47097 * 59.99724 * 21 20 19 23 23 F 1.39905 * 109.47101 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.46949 * 299.99879 * 21 20 19 25 25 C 1.38738 * 119.89002 * 359.70543 * 19 18 17 26 26 C 1.38141 * 119.94391 * 0.02562 * 25 19 18 27 27 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 28 28 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 1.07999 * 119.97019 * 359.97438 * 17 16 15 38 38 H 1.07998 * 120.03323 * 180.24999 * 18 17 16 39 39 H 1.07996 * 120.02821 * 179.97438 * 25 19 18 40 40 H 1.07993 * 119.97516 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 6 2.3191 2.2291 3.6178 17 6 3.5969 2.2483 4.1456 18 6 3.9006 3.0977 5.1919 19 6 2.9191 3.9233 5.7208 20 8 3.2136 4.7551 6.7543 21 6 4.5548 4.7281 7.2469 22 9 5.4362 5.0791 6.2189 23 9 4.6824 5.6377 8.3022 24 9 4.8584 3.4406 7.7023 25 6 1.6362 3.8980 5.1931 26 6 1.3391 3.0509 4.1431 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.6747 3.5148 -4.4447 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 4.3593 1.6016 3.7369 38 1 4.8998 3.1153 5.6013 39 1 0.8703 4.5395 5.6033 40 1 0.3408 3.0311 3.7317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072255156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:29 Heat of formation + Delta-G solvation = -207.799482 kcal Electronic energy + Delta-G solvation = -28194.523158 eV Core-core repulsion = 23559.532028 eV Total energy + Delta-G solvation = -4634.991130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.63830 -48.37424 -48.21898 -40.42782 -39.21348 -37.69075 -35.27608 -32.94867 -32.13719 -31.18190 -30.10481 -28.24728 -26.70357 -25.62786 -23.15374 -23.03525 -22.87207 -21.63077 -19.81283 -19.34244 -19.20225 -18.37211 -16.87340 -16.60404 -16.29304 -16.01195 -15.60556 -15.39216 -15.17355 -14.98548 -14.68711 -14.61349 -14.48408 -14.39914 -14.32923 -14.20436 -13.85731 -13.48030 -13.39957 -13.36736 -13.08397 -12.55216 -12.14741 -11.94842 -11.77665 -11.64416 -11.49367 -11.17185 -11.06511 -10.91884 -10.72947 -10.52182 -10.13773 -9.64396 -9.11126 -9.01878 -8.44694 -8.39553 -7.67634 -6.05156 -4.09854 1.13200 1.24888 1.31355 2.65586 3.29008 3.35566 3.37743 3.43320 3.47185 3.58289 3.81021 4.03054 4.44303 4.56123 4.64326 4.76897 4.98044 5.14347 5.23520 5.26985 5.29623 5.34442 5.51476 5.61015 5.63792 5.75841 5.89881 5.94943 6.02626 6.13293 6.21149 6.32339 6.46002 6.54331 6.85075 7.06248 7.43930 7.53876 7.91353 8.22798 8.41088 8.89411 9.08723 9.55372 11.02916 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.002938 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.868101 B = 9527.915876 C =10847.424511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.533 6.533 15 C -0.106 4.106 16 C -0.067 4.067 17 C -0.064 4.064 18 C -0.186 4.186 19 C 0.093 3.907 20 O -0.312 6.312 21 C 0.603 3.397 22 F -0.163 7.163 23 F -0.135 7.135 24 F -0.167 7.167 25 C -0.121 4.121 26 C -0.071 4.071 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -3.921 20.720 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.410 6.410 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.082 4.082 18 C -0.204 4.204 19 C 0.051 3.949 20 O -0.232 6.232 21 C 0.512 3.488 22 F -0.145 7.145 23 F -0.117 7.117 24 F -0.149 7.149 25 C -0.139 4.139 26 C -0.089 4.089 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.741 -3.070 20.622 21.182 hybrid contribution 1.380 -0.161 -0.372 1.439 sum -2.361 -3.231 20.250 20.641 Atomic orbital electron populations 1.22226 0.96821 1.01416 1.02316 1.21424 0.93493 0.84256 1.02702 1.48265 1.63829 1.13236 1.07693 1.19257 0.96217 0.93629 0.78127 1.21432 0.96952 1.31883 1.06214 0.92513 1.24933 0.97828 0.94918 0.96436 1.69930 1.35686 1.33468 1.14286 0.86510 0.84720 0.77678 0.78591 1.20649 1.21086 1.19917 1.20145 0.78927 0.87032 0.84746 1.90704 1.45246 1.17966 1.87082 1.20806 1.03858 0.98276 0.91612 1.19472 0.93688 0.97740 0.95883 1.20816 0.96045 0.97356 0.94001 1.21410 0.98703 0.99544 1.00788 1.18654 0.95516 0.92302 0.88434 1.86383 1.25544 1.61568 1.49722 1.19359 0.78839 0.74589 0.75978 1.93325 1.69891 1.91902 1.59398 1.93294 1.95059 1.67136 1.56169 1.93292 1.93046 1.39232 1.89334 1.20310 0.93480 1.01788 0.98330 1.20840 0.99738 0.94011 0.94270 0.93060 0.92052 0.92173 0.89975 0.91690 0.95067 0.93940 0.92726 0.88384 0.88358 0.85047 0.85139 0.84576 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.57 5.93 -4.05 -0.02 1.55 16 3 N -0.60 -12.06 2.46 -175.06 -0.43 -12.49 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 9.96 7.67 -10.98 -0.08 9.88 16 14 O -0.53 -13.12 15.61 5.56 0.09 -13.03 16 15 C -0.11 -1.42 4.38 -29.03 -0.13 -1.55 16 16 C -0.07 -0.93 4.37 -104.60 -0.46 -1.39 16 17 C -0.06 -0.88 9.69 -39.60 -0.38 -1.26 16 18 C -0.19 -2.46 8.26 -39.43 -0.33 -2.79 16 19 C 0.09 1.21 6.48 -39.21 -0.25 0.96 16 20 O -0.31 -3.81 10.37 -19.42 -0.20 -4.01 16 21 C 0.60 6.59 3.42 101.05 0.35 6.94 16 22 F -0.16 -1.93 15.56 2.25 0.04 -1.90 16 23 F -0.14 -1.36 17.53 2.25 0.04 -1.32 16 24 F -0.17 -1.75 15.56 2.25 0.04 -1.71 16 25 C -0.12 -1.47 9.99 -39.43 -0.39 -1.86 16 26 C -0.07 -0.89 9.69 -39.61 -0.38 -1.27 16 27 H 0.05 0.58 7.22 -51.93 -0.38 0.21 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 1.05 7.13 -51.93 -0.37 0.68 16 36 H 0.10 1.13 7.34 -51.93 -0.38 0.75 16 37 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 1.57 5.10 -52.49 -0.27 1.30 16 39 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -33.12 354.76 -6.14 -39.26 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.61 Total: -1.50 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.16 Total: 0.35 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.31 Total: -38.26 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.11 Total: -17.04 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.11 Total: -4.93 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.12 -6.14 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072255156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.535 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds