Wall clock time and date at job start Tue Mar 31 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47117 * 2 1 4 4 C 1.46497 * 119.99819 * 270.00094 * 3 2 1 5 5 C 1.50705 * 109.47370 * 269.99653 * 4 3 2 6 6 H 1.07998 * 119.99426 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00248 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99862 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47254 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47327 * 120.00162 * 9 7 5 12 12 H 1.48501 * 109.46897 * 240.00191 * 9 7 5 13 13 C 1.34773 * 120.00065 * 89.99825 * 3 2 1 14 14 O 1.21598 * 120.00022 * 180.02562 * 13 3 2 15 15 N 1.34771 * 120.00160 * 359.97438 * 13 3 2 16 16 C 1.40057 * 120.00184 * 184.59712 * 15 13 3 17 17 C 1.38885 * 120.01504 * 144.92273 * 16 15 13 18 18 C 1.38171 * 120.07831 * 179.70316 * 17 16 15 19 19 C 1.38346 * 120.11245 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.98553 * 180.02562 * 19 18 17 21 21 C 1.39029 * 120.02537 * 359.97438 * 19 18 17 22 22 N 1.40291 * 120.03705 * 180.02562 * 21 19 18 23 23 C 1.36543 * 125.66467 * 129.68849 * 22 21 19 24 24 C 1.34866 * 108.19980 * 179.82866 * 23 22 21 25 25 C 1.40929 * 107.46214 * 0.43087 * 24 23 22 26 26 C 1.34864 * 107.46665 * 359.72978 * 25 24 23 27 27 C 1.38692 * 119.92528 * 0.02562 * 21 19 18 28 28 H 1.09003 * 109.47408 * 299.99916 * 1 2 3 29 29 H 1.08995 * 109.47609 * 60.00318 * 1 2 3 30 30 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47408 * 240.00084 * 2 1 3 32 32 H 1.09006 * 109.47172 * 119.99838 * 2 1 3 33 33 H 1.09007 * 109.47569 * 29.99799 * 4 3 2 34 34 H 1.08999 * 109.47307 * 149.99717 * 4 3 2 35 35 H 0.97002 * 119.99761 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99821 * 4.60411 * 15 13 3 37 37 H 1.07999 * 119.95957 * 359.72840 * 17 16 15 38 38 H 1.08006 * 119.94206 * 180.02562 * 18 17 16 39 39 H 1.08000 * 125.90004 * 359.97438 * 23 22 21 40 40 H 1.07996 * 126.26879 * 180.15894 * 24 23 22 41 41 H 1.07998 * 126.27073 * 179.71342 * 25 24 23 42 42 H 1.08000 * 125.90367 * 179.97438 * 26 25 24 43 43 H 1.07990 * 120.05347 * 180.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1491 2.3897 -2.8781 8 7 3.3490 3.1256 -3.6182 9 14 5.9130 2.0956 -3.4176 10 1 6.6008 1.2407 -2.4169 11 1 5.9201 1.4164 -4.7381 12 1 6.6208 3.3966 -3.5263 13 6 2.2429 2.0166 1.1672 14 8 2.6478 3.1632 1.1672 15 7 2.0178 1.3815 2.3343 16 6 2.1584 2.0710 3.5453 17 6 1.3159 1.7824 4.6110 18 6 1.4574 2.4575 5.8082 19 6 2.4382 3.4230 5.9488 20 9 2.5746 4.0812 7.1207 21 6 3.2840 3.7155 4.8849 22 7 4.2790 4.6943 5.0274 23 6 5.5985 4.5399 4.7118 24 6 6.2348 5.6976 4.9836 25 6 5.2772 6.5967 5.4943 26 6 4.0898 5.9575 5.5102 27 6 3.1431 3.0387 3.6826 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6876 -2.0285 34 1 2.0954 3.1410 -1.1385 35 1 3.6751 3.5161 -4.4441 36 1 1.7584 0.4468 2.3357 37 1 0.5494 1.0291 4.5039 38 1 0.8013 2.2310 6.6357 39 1 6.0535 3.6461 4.3114 40 1 7.2864 5.8975 4.8406 41 1 5.4607 7.6117 5.8145 42 1 3.1515 6.3727 5.8472 43 1 3.7993 3.2639 2.8550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078586638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:45 Heat of formation + Delta-G solvation = 22.395088 kcal Electronic energy + Delta-G solvation = -27983.634997 eV Core-core repulsion = 23945.148134 eV Total energy + Delta-G solvation = -4038.486864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.01625 -41.39589 -40.34969 -38.48780 -35.60327 -34.67639 -33.04166 -32.68854 -30.29565 -29.80886 -28.76898 -28.65208 -26.88506 -23.74741 -23.37004 -23.18072 -22.20765 -20.34581 -20.22852 -19.50879 -18.63010 -17.72134 -17.47186 -16.62936 -16.45022 -16.27278 -15.71825 -15.20272 -14.71700 -14.31483 -14.25768 -14.12354 -13.88271 -13.85082 -13.58422 -13.39836 -13.33326 -12.88042 -12.64549 -12.40121 -12.23376 -12.14795 -12.00615 -11.84617 -11.58458 -11.29155 -11.00991 -10.88020 -10.62584 -10.26452 -10.16337 -9.74661 -9.63422 -9.35416 -8.49375 -8.45165 -8.12862 -8.12058 -7.74887 -6.09921 -4.14986 0.73799 1.00285 2.35018 2.76550 2.99459 3.11707 3.26538 3.27006 3.34999 3.38228 3.76941 4.02951 4.21202 4.42336 4.51513 4.81976 4.94547 5.06044 5.11753 5.24638 5.27111 5.30997 5.44406 5.47680 5.53775 5.60982 5.71383 5.82311 5.83781 5.94906 6.08789 6.14868 6.26461 6.31793 6.34201 6.35942 6.64973 6.84449 7.00854 7.23102 7.23942 7.38578 7.48787 7.53221 7.86877 8.15592 8.41068 8.84713 9.06420 9.50665 10.98078 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.003748 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.181090 B = 7468.016059 C = 9528.782137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.603 5.603 4 C 0.260 3.740 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.697 3.303 14 O -0.565 6.565 15 N -0.694 5.694 16 C 0.191 3.809 17 C -0.127 4.127 18 C -0.117 4.117 19 C 0.068 3.932 20 F -0.134 7.134 21 C 0.109 3.891 22 N -0.400 5.400 23 C -0.004 4.004 24 C -0.195 4.195 25 C -0.196 4.196 26 C -0.005 4.005 27 C -0.096 4.096 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.406 0.594 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -5.065 18.023 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.399 3.601 14 O -0.441 6.441 15 N -0.344 5.344 16 C 0.093 3.907 17 C -0.148 4.148 18 C -0.137 4.137 19 C 0.047 3.953 20 F -0.113 7.113 21 C 0.017 3.983 22 N -0.073 5.073 23 C -0.131 4.131 24 C -0.220 4.220 25 C -0.220 4.220 26 C -0.132 4.132 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.243 0.757 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.180 0.820 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.177 0.823 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.658 -4.329 17.675 18.784 hybrid contribution 0.797 -0.494 -0.296 0.983 sum -3.861 -4.822 17.379 18.444 Atomic orbital electron populations 1.22249 0.96515 1.01569 1.02628 1.21402 0.93690 0.84186 1.02552 1.47645 1.66585 1.13327 1.06152 1.19274 0.96378 0.93520 0.76745 1.21461 0.96897 1.32080 1.06314 0.92424 1.24919 0.97868 0.94840 0.96352 1.69935 1.35621 1.33317 1.14340 0.86447 0.84577 0.78121 0.78303 1.19841 1.20943 1.20808 1.15962 0.79290 0.84803 0.80091 1.90921 1.51182 1.16683 1.85339 1.43028 1.73713 1.14318 1.03361 1.17309 0.93361 0.94287 0.85729 1.20822 0.99173 1.02524 0.92288 1.20745 0.98065 0.95933 0.98971 1.17482 0.99878 0.96707 0.81262 1.91497 1.95377 1.79548 1.44846 1.17579 0.92676 0.94518 0.93560 1.41342 1.06315 1.09828 1.49822 1.21973 0.82123 1.01294 1.07735 1.20921 0.99640 0.93629 1.07766 1.20902 0.92464 1.00247 1.08420 1.21901 1.00377 0.84339 1.06542 1.21314 0.98261 0.96660 0.95551 0.93066 0.91728 0.91988 0.89324 0.92446 0.94667 0.93682 0.92692 0.75651 0.84195 0.83693 0.81962 0.84320 0.84404 0.82276 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.11 1.51 5.93 -4.04 -0.02 1.48 16 3 N -0.60 -11.87 2.46 -180.80 -0.44 -12.31 16 4 C 0.26 6.49 5.16 -5.19 -0.03 6.47 16 5 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.70 13.74 8.12 -86.93 -0.71 13.04 16 14 O -0.57 -13.69 13.37 5.28 0.07 -13.62 16 15 N -0.69 -9.93 5.22 -14.22 -0.07 -10.00 16 16 C 0.19 2.63 6.29 -83.67 -0.53 2.10 16 17 C -0.13 -1.29 9.96 -39.37 -0.39 -1.68 16 18 C -0.12 -1.18 10.01 -39.57 -0.40 -1.58 16 19 C 0.07 0.88 7.20 -39.25 -0.28 0.60 16 20 F -0.13 -1.77 16.25 2.25 0.04 -1.74 16 21 C 0.11 1.62 5.98 -83.52 -0.50 1.12 16 22 N -0.40 -6.16 2.82 -60.89 -0.17 -6.33 16 23 C 0.00 -0.06 11.13 -16.65 -0.19 -0.25 16 24 C -0.20 -2.73 10.86 -39.76 -0.43 -3.16 16 25 C -0.20 -2.69 10.86 -39.76 -0.43 -3.12 16 26 C 0.00 -0.07 10.37 -16.65 -0.17 -0.24 16 27 C -0.10 -1.53 8.32 -39.23 -0.33 -1.86 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.64 6.30 -51.93 -0.33 0.31 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.41 4.38 6.52 -40.82 -0.27 4.11 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 40 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.16 3.13 6.23 -52.49 -0.33 2.81 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -33.42 371.03 -9.21 -42.63 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.49 Total: 6.45 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -4.44 Total: -1.88 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.05 Total: -53.93 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.07 Total: -13.62 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.42 -9.21 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078586638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.025 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds