Wall clock time and date at job start Tue Mar 31 2020 05:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47117 * 2 1 4 4 C 1.46497 * 119.99819 * 270.00094 * 3 2 1 5 5 C 1.50705 * 109.47370 * 269.99653 * 4 3 2 6 6 H 1.07998 * 119.99426 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00248 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99862 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47254 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47327 * 120.00162 * 9 7 5 12 12 H 1.48501 * 109.46897 * 240.00191 * 9 7 5 13 13 C 1.34773 * 120.00065 * 89.99825 * 3 2 1 14 14 O 1.21598 * 120.00022 * 180.02562 * 13 3 2 15 15 N 1.34771 * 120.00160 * 359.97438 * 13 3 2 16 16 C 1.40057 * 120.00184 * 184.59712 * 15 13 3 17 17 C 1.38885 * 120.01504 * 144.92273 * 16 15 13 18 18 C 1.38171 * 120.07831 * 179.70316 * 17 16 15 19 19 C 1.38346 * 120.11245 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.98553 * 180.02562 * 19 18 17 21 21 C 1.39029 * 120.02537 * 359.97438 * 19 18 17 22 22 N 1.40291 * 120.03705 * 180.02562 * 21 19 18 23 23 C 1.36543 * 125.66467 * 129.68849 * 22 21 19 24 24 C 1.34866 * 108.19980 * 179.82866 * 23 22 21 25 25 C 1.40929 * 107.46214 * 0.43087 * 24 23 22 26 26 C 1.34864 * 107.46665 * 359.72978 * 25 24 23 27 27 C 1.38692 * 119.92528 * 0.02562 * 21 19 18 28 28 H 1.09003 * 109.47408 * 299.99916 * 1 2 3 29 29 H 1.08995 * 109.47609 * 60.00318 * 1 2 3 30 30 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47408 * 240.00084 * 2 1 3 32 32 H 1.09006 * 109.47172 * 119.99838 * 2 1 3 33 33 H 1.09007 * 109.47569 * 29.99799 * 4 3 2 34 34 H 1.08999 * 109.47307 * 149.99717 * 4 3 2 35 35 H 0.97002 * 119.99761 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99821 * 4.60411 * 15 13 3 37 37 H 1.07999 * 119.95957 * 359.72840 * 17 16 15 38 38 H 1.08006 * 119.94206 * 180.02562 * 18 17 16 39 39 H 1.08000 * 125.90004 * 359.97438 * 23 22 21 40 40 H 1.07996 * 126.26879 * 180.15894 * 24 23 22 41 41 H 1.07998 * 126.27073 * 179.71342 * 25 24 23 42 42 H 1.08000 * 125.90367 * 179.97438 * 26 25 24 43 43 H 1.07990 * 120.05347 * 180.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1491 2.3897 -2.8781 8 7 3.3490 3.1256 -3.6182 9 14 5.9130 2.0956 -3.4176 10 1 6.6008 1.2407 -2.4169 11 1 5.9201 1.4164 -4.7381 12 1 6.6208 3.3966 -3.5263 13 6 2.2429 2.0166 1.1672 14 8 2.6478 3.1632 1.1672 15 7 2.0178 1.3815 2.3343 16 6 2.1584 2.0710 3.5453 17 6 1.3159 1.7824 4.6110 18 6 1.4574 2.4575 5.8082 19 6 2.4382 3.4230 5.9488 20 9 2.5746 4.0812 7.1207 21 6 3.2840 3.7155 4.8849 22 7 4.2790 4.6943 5.0274 23 6 5.5985 4.5399 4.7118 24 6 6.2348 5.6976 4.9836 25 6 5.2772 6.5967 5.4943 26 6 4.0898 5.9575 5.5102 27 6 3.1431 3.0387 3.6826 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6876 -2.0285 34 1 2.0954 3.1410 -1.1385 35 1 3.6751 3.5161 -4.4441 36 1 1.7584 0.4468 2.3357 37 1 0.5494 1.0291 4.5039 38 1 0.8013 2.2310 6.6357 39 1 6.0535 3.6461 4.3114 40 1 7.2864 5.8975 4.8406 41 1 5.4607 7.6117 5.8145 42 1 3.1515 6.3727 5.8472 43 1 3.7993 3.2639 2.8550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078586638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:44 Heat of formation + Delta-G solvation = 3.807467 kcal Electronic energy + Delta-G solvation = -27984.441017 eV Core-core repulsion = 23945.148134 eV Total energy + Delta-G solvation = -4039.292883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.02942 -42.49107 -41.69053 -39.67414 -37.11971 -36.02810 -34.81590 -33.96027 -31.65018 -30.99892 -29.84874 -29.82657 -28.62182 -25.31779 -24.60434 -24.37167 -23.47181 -21.50366 -21.34530 -20.83529 -19.79715 -19.02192 -18.59434 -18.55230 -17.68773 -17.50743 -16.78214 -16.72324 -16.40121 -15.76925 -15.36524 -15.28638 -15.19915 -14.97416 -14.67740 -14.61580 -14.48933 -14.25930 -13.88587 -13.66991 -13.54882 -13.31029 -13.26128 -13.08748 -13.06933 -12.73234 -12.59235 -12.52969 -12.21646 -11.96573 -11.72711 -11.46361 -11.03481 -10.65610 -10.56673 -9.69303 -9.45185 -9.24302 -9.06349 -8.23251 -6.37700 -0.27104 -0.00835 1.25092 1.34829 1.37881 1.47936 1.57465 1.82402 2.01892 2.02927 2.35820 2.50618 2.93438 3.02790 3.07252 3.61404 3.86392 3.96319 4.00827 4.05836 4.19639 4.33605 4.37590 4.49514 4.51587 4.56208 4.70817 4.82945 4.89275 4.95543 4.97644 5.01126 5.09922 5.20209 5.22629 5.25514 5.29986 5.38415 5.54889 5.72894 5.76380 5.92557 6.02000 6.04786 6.14788 6.40069 6.71503 6.99952 7.29362 7.56920 8.83459 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.003748 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.181090 B = 7468.016059 C = 9528.782137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.609 5.609 4 C 0.279 3.721 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.285 1.285 13 C 0.693 3.307 14 O -0.621 6.621 15 N -0.670 5.670 16 C 0.172 3.828 17 C -0.097 4.097 18 C -0.097 4.097 19 C 0.065 3.935 20 F -0.136 7.136 21 C 0.089 3.911 22 N -0.411 5.411 23 C -0.030 4.030 24 C -0.203 4.203 25 C -0.202 4.202 26 C -0.022 4.022 27 C -0.119 4.119 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.029 0.971 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.426 0.574 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -7.427 20.220 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.343 5.343 4 C 0.157 3.843 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.211 1.211 13 C 0.395 3.605 14 O -0.501 6.501 15 N -0.322 5.322 16 C 0.075 3.925 17 C -0.118 4.118 18 C -0.117 4.117 19 C 0.043 3.957 20 F -0.115 7.115 21 C -0.003 4.003 22 N -0.084 5.084 23 C -0.157 4.157 24 C -0.227 4.227 25 C -0.226 4.226 26 C -0.149 4.149 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.267 0.733 37 H 0.205 0.795 38 H 0.207 0.793 39 H 0.184 0.816 40 H 0.175 0.825 41 H 0.179 0.821 42 H 0.190 0.810 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.861 -6.769 19.921 21.840 hybrid contribution 1.120 0.247 -0.894 1.454 sum -4.742 -6.522 19.027 20.665 Atomic orbital electron populations 1.22174 0.94216 1.03736 1.01867 1.21763 0.95544 0.81079 1.04015 1.47484 1.66978 1.15268 1.04574 1.18649 0.95260 0.91311 0.79072 1.21739 0.97957 1.31897 1.06375 0.92931 1.25794 1.02100 0.94515 0.96496 1.70047 1.37597 1.34214 1.14838 0.85421 0.79324 0.77906 0.78472 1.19216 1.19282 1.21073 1.16135 0.78819 0.84270 0.81280 1.90897 1.53405 1.19398 1.86370 1.42565 1.72818 1.14950 1.01860 1.17560 0.94097 0.94529 0.86336 1.21244 0.98141 1.02069 0.90321 1.21245 0.96792 0.93652 0.99972 1.17730 1.00115 0.97266 0.80543 1.91492 1.95444 1.79788 1.44763 1.17739 0.93543 0.94950 0.94085 1.41547 1.06574 1.10367 1.49917 1.22271 0.82613 1.02137 1.08634 1.21277 1.00728 0.93377 1.07283 1.21274 0.92108 1.01228 1.07986 1.22302 1.01370 0.84344 1.06887 1.21011 0.99337 0.98843 0.94968 0.92102 0.94249 0.88225 0.90315 0.88548 0.95322 0.98524 0.92432 0.73275 0.79463 0.79345 0.81621 0.82474 0.82077 0.80961 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.10 2.64 5.93 86.38 0.51 3.16 16 3 N -0.61 -24.52 2.46 -844.18 -2.07 -26.59 16 4 C 0.28 14.68 5.16 85.64 0.44 15.12 16 5 C -0.54 -30.73 9.39 25.60 0.24 -30.49 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 C 0.69 28.07 8.12 179.06 1.45 29.52 16 14 O -0.62 -32.13 13.37 -4.02 -0.05 -32.18 16 15 N -0.67 -18.28 5.22 -317.17 -1.66 -19.93 16 16 C 0.17 4.50 6.29 38.10 0.24 4.74 16 17 C -0.10 -1.55 9.96 22.41 0.22 -1.33 16 18 C -0.10 -1.54 10.01 22.28 0.22 -1.31 16 19 C 0.06 1.55 7.20 22.49 0.16 1.72 16 20 F -0.14 -3.37 16.25 44.97 0.73 -2.63 16 21 C 0.09 2.69 5.98 38.08 0.23 2.92 16 22 N -0.41 -13.18 2.82 -346.54 -0.98 -14.16 16 23 C -0.03 -0.93 11.13 83.18 0.93 -0.01 16 24 C -0.20 -5.80 10.86 22.15 0.24 -5.56 16 25 C -0.20 -5.56 10.86 22.15 0.24 -5.32 16 26 C -0.02 -0.66 10.37 83.18 0.86 0.21 16 27 C -0.12 -3.97 8.32 22.50 0.19 -3.79 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 32 H 0.10 1.82 6.30 -2.38 -0.02 1.81 16 33 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 34 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 35 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.43 7.76 6.52 -92.71 -0.60 7.16 16 37 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.17 4.78 8.06 -2.91 -0.02 4.75 16 40 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.12 5.04 6.23 -2.92 -0.02 5.02 16 Total: -1.00 -79.98 371.03 6.10 -73.88 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.43 Total: 22.24 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.38 Total: 7.94 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -4.42 Total: -116.16 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.73 Total: -2.63 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -79.98 6.10 -73.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078586638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.689 kcal (2) G-P(sol) polarization free energy of solvation -79.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds