Wall clock time and date at job start Tue Mar 31 2020 04:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00101 * 2 1 4 4 C 1.53005 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47204 * 184.99978 * 4 3 2 6 6 C 1.53005 * 109.46642 * 304.99802 * 4 3 2 7 7 N 1.46499 * 109.47001 * 184.99963 * 6 4 3 8 8 C 1.34432 * 126.81896 * 124.70778 * 7 6 4 9 9 N 1.30836 * 108.07305 * 179.89820 * 8 7 6 10 10 C 1.33245 * 109.83064 * 0.37743 * 9 8 7 11 11 N 1.30715 * 108.94241 * 359.76898 * 10 9 8 12 12 O 1.45197 * 109.47081 * 64.99677 * 4 3 2 13 13 C 1.34704 * 117.00028 * 90.00428 * 12 4 3 14 14 O 1.21462 * 120.00124 * 359.97438 * 13 12 4 15 15 C 1.47766 * 119.99836 * 179.97438 * 13 12 4 16 16 C 1.39967 * 120.03467 * 359.72966 * 15 13 12 17 17 C 1.38312 * 120.35684 * 179.76499 * 16 15 13 18 18 C 1.37762 * 120.41647 * 0.50686 * 17 16 15 19 19 C 1.40751 * 120.04936 * 359.74364 * 18 17 16 20 20 C 1.41443 * 120.17628 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99943 * 24.44166 * 20 19 18 22 22 C 1.39931 * 120.00085 * 204.43934 * 20 19 18 23 23 N 1.30827 * 120.00460 * 17.88859 * 22 20 19 24 24 Si 1.86807 * 119.99840 * 197.89257 * 22 20 19 25 25 H 1.48498 * 109.47217 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46989 * 120.00195 * 24 22 20 27 27 H 1.48503 * 109.46661 * 239.99803 * 24 22 20 28 28 C 1.39052 * 120.02903 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47062 * 300.00459 * 1 2 3 30 30 H 1.08998 * 109.47274 * 60.00076 * 1 2 3 31 31 H 1.09003 * 109.47706 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47307 * 59.99859 * 3 2 1 33 33 H 1.09008 * 109.46751 * 299.99591 * 3 2 1 34 34 H 1.09004 * 109.46987 * 305.00199 * 6 4 3 35 35 H 1.09004 * 109.47081 * 65.00104 * 6 4 3 36 36 H 1.07993 * 125.96569 * 0.04250 * 8 7 6 37 37 H 1.07996 * 125.52747 * 179.72733 * 10 9 8 38 38 H 1.08000 * 119.82001 * 359.97438 * 16 15 13 39 39 H 1.07998 * 119.79533 * 180.25573 * 17 16 15 40 40 H 1.07998 * 119.97453 * 179.76992 * 18 17 16 41 41 H 0.96993 * 120.00392 * 179.97438 * 23 22 20 42 42 H 1.07999 * 120.20588 * 359.96067 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 6 3.9789 0.3193 1.1807 7 7 5.4421 0.3012 1.2507 8 6 6.2024 0.6371 2.3073 9 7 7.4571 0.4846 1.9694 10 6 7.5375 0.0627 0.7080 11 7 6.3294 -0.0644 0.2253 12 8 3.9718 0.5698 -1.2416 13 6 4.2413 1.3953 -2.2713 14 8 4.1149 2.5958 -2.1365 15 6 4.6907 0.8404 -3.5650 16 6 4.8421 -0.5425 -3.7194 17 6 5.2577 -1.0695 -4.9288 18 6 5.5375 -0.2394 -5.9920 19 6 5.3962 1.1543 -5.8543 20 6 5.6823 2.0090 -6.9443 21 1 5.6224 1.6335 -7.9552 22 6 6.0428 3.3412 -6.7130 23 7 6.4548 3.7110 -5.5277 24 14 5.9355 4.5915 -8.0968 25 1 5.4448 3.9247 -9.3295 26 1 4.9963 5.6758 -7.7124 27 1 7.2807 5.1680 -8.3483 28 6 4.9686 1.6919 -4.6286 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.5760 0.7327 2.1053 35 1 3.6091 -0.6971 1.0457 36 1 5.8406 0.9718 3.2682 37 1 8.4524 -0.1405 0.1714 38 1 4.6299 -1.2018 -2.8908 39 1 5.3675 -2.1382 -5.0391 40 1 5.8651 -0.6583 -6.9320 41 1 6.7051 4.6344 -5.3675 42 1 4.8565 2.7598 -4.5132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089409777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:56 Heat of formation + Delta-G solvation = -14.935536 kcal Electronic energy + Delta-G solvation = -28227.134585 eV Core-core repulsion = 24174.656155 eV Total energy + Delta-G solvation = -4052.478430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96018 -39.99783 -38.17832 -37.26436 -35.97421 -34.29282 -33.70361 -31.23855 -31.01084 -30.07779 -29.45736 -27.24773 -25.89174 -25.36704 -23.77423 -22.24066 -21.87795 -21.04083 -20.83138 -19.79758 -17.95492 -17.60395 -16.95100 -16.42963 -15.99356 -15.90918 -15.73281 -15.26928 -14.93846 -14.76456 -14.56525 -14.40994 -14.10268 -13.68183 -13.33055 -13.10242 -12.87802 -12.59007 -12.50016 -12.34313 -11.92831 -11.70740 -11.65640 -11.31388 -11.18551 -11.08283 -10.73906 -10.49006 -10.36083 -10.17282 -9.94029 -9.90530 -9.69582 -9.68247 -9.58377 -9.44841 -9.22371 -7.70546 -7.51496 -6.80459 -4.41004 1.71855 2.00876 2.30540 2.79694 3.06231 3.07310 3.07518 3.12079 3.14967 3.51050 3.65554 3.91500 4.17476 4.32032 4.56863 4.60213 4.70825 4.93030 4.94771 4.98712 5.14235 5.20328 5.29625 5.40310 5.46361 5.52311 5.57740 5.82359 6.17412 6.30332 6.48837 6.53807 6.64314 6.81360 6.85064 6.96417 6.97505 7.01718 7.19593 7.34665 7.73010 7.79641 7.93948 8.13294 8.16669 8.47032 8.56912 8.79873 8.82038 10.14918 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.003644 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.561251 B = 7682.414814 C = 8535.783782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.048 3.952 4 C 0.081 3.919 5 H 0.100 0.900 6 C 0.139 3.861 7 N -0.381 5.381 8 C 0.242 3.758 9 N -0.548 5.548 10 C 0.189 3.811 11 N -0.281 5.281 12 O -0.320 6.320 13 C 0.517 3.483 14 O -0.527 6.527 15 C -0.112 4.112 16 C -0.181 4.181 17 C -0.106 4.106 18 C -0.200 4.200 19 C 0.095 3.905 20 C -0.462 4.462 21 H 0.082 0.918 22 C 0.074 3.926 23 N -0.788 5.788 24 Si 0.909 3.091 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.274 1.274 28 C -0.091 4.091 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.216 0.784 37 H 0.216 0.784 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.283 0.717 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.940 -4.011 14.714 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.030 4.030 4 C 0.024 3.976 5 H 0.118 0.882 6 C 0.016 3.984 7 N -0.173 5.173 8 C -0.055 4.055 9 N -0.275 5.275 10 C -0.114 4.114 11 N -0.107 5.107 12 O -0.236 6.236 13 C 0.365 3.635 14 O -0.417 6.417 15 C -0.114 4.114 16 C -0.201 4.201 17 C -0.124 4.124 18 C -0.219 4.219 19 C 0.092 3.908 20 C -0.491 4.491 21 H 0.100 0.900 22 C -0.145 4.145 23 N -0.413 5.413 24 Si 0.733 3.267 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.110 4.110 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.232 0.768 37 H 0.232 0.768 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.735 -3.806 14.384 16.769 hybrid contribution -0.377 1.140 -0.258 1.228 sum -8.112 -2.666 14.125 16.505 Atomic orbital electron populations 1.22766 0.80857 1.02945 1.00004 1.87940 1.19797 1.26723 1.95419 1.22948 0.92199 0.85862 1.02004 1.22829 0.92586 0.98278 0.83940 0.88194 1.21881 0.74204 1.04035 0.98235 1.50585 1.07677 1.49282 1.09734 1.26020 0.86973 0.97675 0.94853 1.70501 1.18815 1.23294 1.14939 1.26115 0.96850 0.98219 0.90250 1.78447 1.00056 1.21856 1.10327 1.86826 1.77586 1.39636 1.19573 1.21925 0.72550 0.84526 0.84520 1.90735 1.51090 1.16562 1.83319 1.18786 1.08237 0.94578 0.89763 1.20581 1.08936 0.93053 0.97542 1.20512 1.00705 0.97652 0.93577 1.21187 1.08618 0.93952 0.98185 1.17523 0.89433 0.91438 0.92379 1.19580 1.41056 0.94199 0.94263 0.89981 1.25947 0.92335 0.99526 0.96672 1.69795 1.29438 1.19324 1.22719 0.86251 0.78753 0.80128 0.81577 1.18304 1.19642 1.19905 1.21636 0.97912 0.99680 0.91771 0.94169 0.93853 0.89399 0.91518 0.91532 0.86575 0.87150 0.76817 0.76816 0.87728 0.88601 0.88414 0.90580 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.55 9.89 -38.80 -0.38 -4.94 16 3 C 0.05 0.56 5.80 37.16 0.22 0.77 16 4 C 0.08 1.14 2.57 -26.73 -0.07 1.07 16 5 H 0.10 1.53 7.16 -51.93 -0.37 1.16 16 6 C 0.14 1.47 5.97 -4.04 -0.02 1.45 16 7 N -0.38 -5.05 3.69 -62.63 -0.23 -5.28 16 8 C 0.24 2.72 12.63 -90.65 -1.14 1.58 16 9 N -0.55 -7.81 11.19 -15.83 -0.18 -7.99 16 10 C 0.19 2.88 13.03 -91.81 -1.20 1.68 16 11 N -0.28 -4.78 11.75 29.29 0.34 -4.43 16 12 O -0.32 -6.08 8.18 -43.28 -0.35 -6.44 16 13 C 0.52 11.78 7.87 34.63 0.27 12.05 16 14 O -0.53 -12.82 15.59 -19.24 -0.30 -13.12 16 15 C -0.11 -2.78 5.87 -105.05 -0.62 -3.39 16 16 C -0.18 -4.15 9.62 -38.91 -0.37 -4.53 16 17 C -0.11 -2.36 10.01 -39.73 -0.40 -2.76 16 18 C -0.20 -4.81 9.78 -38.81 -0.38 -5.19 16 19 C 0.09 2.52 5.57 -106.87 -0.60 1.93 16 20 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 21 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 22 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 23 N -0.79 -21.01 10.96 55.55 0.61 -20.40 16 24 Si 0.91 18.81 29.60 -169.99 -5.03 13.77 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 C -0.09 -2.44 8.24 -38.42 -0.32 -2.76 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.12 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.11 1.22 7.73 -51.93 -0.40 0.82 16 36 H 0.22 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.22 2.70 8.06 -52.49 -0.42 2.27 16 38 H 0.10 2.24 7.59 -52.49 -0.40 1.84 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 42 H 0.13 3.85 5.74 -52.49 -0.30 3.55 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -34.06 369.77 -9.14 -43.21 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.25 Total: 7.51 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.94 Total: -7.47 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.54 Total: -38.10 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -1.04 Total: -24.49 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.06 -9.14 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089409777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.271 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds