Wall clock time and date at job start Tue Mar 31 2020 04:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00101 * 2 1 4 4 C 1.53005 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47204 * 184.99978 * 4 3 2 6 6 C 1.53005 * 109.46642 * 304.99802 * 4 3 2 7 7 N 1.46499 * 109.47001 * 184.99963 * 6 4 3 8 8 C 1.34432 * 126.81896 * 124.70778 * 7 6 4 9 9 N 1.30836 * 108.07305 * 179.89820 * 8 7 6 10 10 C 1.33245 * 109.83064 * 0.37743 * 9 8 7 11 11 N 1.30715 * 108.94241 * 359.76898 * 10 9 8 12 12 O 1.45197 * 109.47081 * 64.99677 * 4 3 2 13 13 C 1.34704 * 117.00028 * 90.00428 * 12 4 3 14 14 O 1.21462 * 120.00124 * 359.97438 * 13 12 4 15 15 C 1.47766 * 119.99836 * 179.97438 * 13 12 4 16 16 C 1.39967 * 120.03467 * 359.72966 * 15 13 12 17 17 C 1.38312 * 120.35684 * 179.76499 * 16 15 13 18 18 C 1.37762 * 120.41647 * 0.50686 * 17 16 15 19 19 C 1.40751 * 120.04936 * 359.74364 * 18 17 16 20 20 C 1.41443 * 120.17628 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99943 * 24.44166 * 20 19 18 22 22 C 1.39931 * 120.00085 * 204.43934 * 20 19 18 23 23 N 1.30827 * 120.00460 * 17.88859 * 22 20 19 24 24 Si 1.86807 * 119.99840 * 197.89257 * 22 20 19 25 25 H 1.48498 * 109.47217 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46989 * 120.00195 * 24 22 20 27 27 H 1.48503 * 109.46661 * 239.99803 * 24 22 20 28 28 C 1.39052 * 120.02903 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47062 * 300.00459 * 1 2 3 30 30 H 1.08998 * 109.47274 * 60.00076 * 1 2 3 31 31 H 1.09003 * 109.47706 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47307 * 59.99859 * 3 2 1 33 33 H 1.09008 * 109.46751 * 299.99591 * 3 2 1 34 34 H 1.09004 * 109.46987 * 305.00199 * 6 4 3 35 35 H 1.09004 * 109.47081 * 65.00104 * 6 4 3 36 36 H 1.07993 * 125.96569 * 0.04250 * 8 7 6 37 37 H 1.07996 * 125.52747 * 179.72733 * 10 9 8 38 38 H 1.08000 * 119.82001 * 359.97438 * 16 15 13 39 39 H 1.07998 * 119.79533 * 180.25573 * 17 16 15 40 40 H 1.07998 * 119.97453 * 179.76992 * 18 17 16 41 41 H 0.96993 * 120.00392 * 179.97438 * 23 22 20 42 42 H 1.07999 * 120.20588 * 359.96067 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 6 3.9789 0.3193 1.1807 7 7 5.4421 0.3012 1.2507 8 6 6.2024 0.6371 2.3073 9 7 7.4571 0.4846 1.9694 10 6 7.5375 0.0627 0.7080 11 7 6.3294 -0.0644 0.2253 12 8 3.9718 0.5698 -1.2416 13 6 4.2413 1.3953 -2.2713 14 8 4.1149 2.5958 -2.1365 15 6 4.6907 0.8404 -3.5650 16 6 4.8421 -0.5425 -3.7194 17 6 5.2577 -1.0695 -4.9288 18 6 5.5375 -0.2394 -5.9920 19 6 5.3962 1.1543 -5.8543 20 6 5.6823 2.0090 -6.9443 21 1 5.6224 1.6335 -7.9552 22 6 6.0428 3.3412 -6.7130 23 7 6.4548 3.7110 -5.5277 24 14 5.9355 4.5915 -8.0968 25 1 5.4448 3.9247 -9.3295 26 1 4.9963 5.6758 -7.7124 27 1 7.2807 5.1680 -8.3483 28 6 4.9686 1.6919 -4.6286 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.5760 0.7327 2.1053 35 1 3.6091 -0.6971 1.0457 36 1 5.8406 0.9718 3.2682 37 1 8.4524 -0.1405 0.1714 38 1 4.6299 -1.2018 -2.8908 39 1 5.3675 -2.1382 -5.0391 40 1 5.8651 -0.6583 -6.9320 41 1 6.7051 4.6344 -5.3675 42 1 4.8565 2.7598 -4.5132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089409777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:55 Heat of formation + Delta-G solvation = -34.087539 kcal Electronic energy + Delta-G solvation = -28227.965078 eV Core-core repulsion = 24174.656155 eV Total energy + Delta-G solvation = -4053.308924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.96939 -41.57084 -39.48741 -38.81619 -37.43856 -35.67675 -35.35842 -32.51427 -32.14204 -31.68784 -31.34616 -28.06025 -27.31965 -26.70897 -25.40463 -23.43435 -22.87771 -22.83208 -22.08813 -21.43320 -19.73252 -18.65343 -18.39935 -17.76584 -17.40680 -17.10387 -16.79912 -16.62311 -16.51402 -16.30064 -15.78106 -15.56799 -15.24212 -15.10321 -14.98697 -14.48360 -14.27766 -14.05147 -13.78449 -13.49431 -13.24048 -13.06082 -12.99471 -12.82896 -12.73564 -12.59686 -12.24392 -12.19117 -12.05918 -11.67951 -11.56059 -11.28959 -11.11481 -10.95972 -10.78600 -10.74891 -10.57290 -9.62563 -9.45906 -8.70196 -6.41490 0.13251 0.74783 0.94845 1.35805 1.40541 1.43663 1.52546 1.66193 1.81259 2.03414 2.17609 2.66755 2.71668 3.23400 3.53252 3.60795 3.67708 3.70819 3.83036 4.04651 4.10919 4.27390 4.38921 4.44332 4.48149 4.51536 4.57381 4.60151 4.62287 4.84667 4.88070 5.03478 5.11544 5.25033 5.26795 5.31535 5.43690 5.47470 5.81054 5.88697 5.97295 5.99092 6.07468 6.20874 6.51308 6.81327 6.85865 6.88204 7.15148 8.27549 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.003644 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.561251 B = 7682.414814 C = 8535.783782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.054 3.946 4 C 0.069 3.931 5 H 0.085 0.915 6 C 0.143 3.857 7 N -0.388 5.388 8 C 0.260 3.740 9 N -0.576 5.576 10 C 0.180 3.820 11 N -0.337 5.337 12 O -0.321 6.321 13 C 0.521 3.479 14 O -0.553 6.553 15 C -0.127 4.127 16 C -0.173 4.173 17 C -0.100 4.100 18 C -0.203 4.203 19 C 0.067 3.933 20 C -0.494 4.494 21 H 0.088 0.912 22 C 0.030 3.970 23 N -0.828 5.828 24 Si 0.984 3.016 25 H -0.250 1.250 26 H -0.270 1.270 27 H -0.264 1.264 28 C -0.124 4.124 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.037 0.963 34 H 0.179 0.821 35 H 0.108 0.892 36 H 0.272 0.728 37 H 0.224 0.776 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.116 0.884 41 H 0.287 0.713 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 -4.849 16.542 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.023 4.023 4 C 0.013 3.987 5 H 0.103 0.897 6 C 0.022 3.978 7 N -0.179 5.179 8 C -0.036 4.036 9 N -0.304 5.304 10 C -0.123 4.123 11 N -0.165 5.165 12 O -0.237 6.237 13 C 0.369 3.631 14 O -0.447 6.447 15 C -0.128 4.128 16 C -0.192 4.192 17 C -0.118 4.118 18 C -0.223 4.223 19 C 0.065 3.935 20 C -0.524 4.524 21 H 0.106 0.894 22 C -0.184 4.184 23 N -0.454 5.454 24 Si 0.804 3.196 25 H -0.173 1.173 26 H -0.194 1.194 27 H -0.189 1.189 28 C -0.144 4.144 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.055 0.945 34 H 0.196 0.804 35 H 0.126 0.874 36 H 0.288 0.712 37 H 0.240 0.760 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.961 -4.686 16.229 19.121 hybrid contribution -0.080 1.267 -0.627 1.416 sum -9.042 -3.419 15.602 18.354 Atomic orbital electron populations 1.22963 0.79136 1.04094 1.00889 1.87901 1.21657 1.26658 1.95594 1.22883 0.90392 0.86146 1.02895 1.23333 0.94423 0.98227 0.82731 0.89720 1.22224 0.72961 1.03635 0.98969 1.50701 1.08339 1.49394 1.09496 1.27096 0.85853 0.94812 0.95802 1.70509 1.20764 1.24557 1.14600 1.26403 0.97003 0.97966 0.90944 1.78331 1.01204 1.23996 1.12925 1.86761 1.77053 1.39296 1.20563 1.21607 0.72203 0.84258 0.85010 1.90702 1.52312 1.17677 1.83968 1.19081 1.07837 0.95411 0.90451 1.20843 1.07596 0.92369 0.98410 1.20927 0.98871 0.99589 0.92437 1.21485 1.08004 0.93182 0.99582 1.17888 0.90049 0.92992 0.92608 1.19887 1.42503 0.95461 0.94500 0.89395 1.26880 0.91186 1.01202 0.99169 1.69893 1.30574 1.19914 1.25023 0.85129 0.79013 0.77132 0.78291 1.17255 1.19445 1.18900 1.21439 1.00921 0.98673 0.93332 0.91402 0.94832 0.88197 0.86741 0.94464 0.80422 0.87360 0.71239 0.75982 0.85989 0.84456 0.86608 0.90252 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.70 9.89 -145.57 -1.44 -10.14 16 3 C 0.05 1.17 5.80 71.98 0.42 1.59 16 4 C 0.07 1.86 2.57 30.60 0.08 1.94 16 5 H 0.08 2.57 7.16 -2.39 -0.02 2.55 16 6 C 0.14 2.59 5.97 86.38 0.52 3.11 16 7 N -0.39 -9.50 3.69 -352.05 -1.30 -10.80 16 8 C 0.26 5.08 12.63 180.36 2.28 7.36 16 9 N -0.58 -15.71 11.19 -204.00 -2.28 -18.00 16 10 C 0.18 5.53 13.03 180.76 2.36 7.88 16 11 N -0.34 -11.48 11.75 -61.24 -0.72 -12.20 16 12 O -0.32 -12.33 8.18 -53.47 -0.44 -12.77 16 13 C 0.52 24.70 7.87 70.34 0.55 25.25 16 14 O -0.55 -28.46 15.59 19.96 0.31 -28.15 16 15 C -0.13 -6.50 5.87 -20.14 -0.12 -6.62 16 16 C -0.17 -7.89 9.62 22.71 0.22 -7.67 16 17 C -0.10 -4.34 10.01 22.17 0.22 -4.12 16 18 C -0.20 -9.79 9.78 22.77 0.22 -9.56 16 19 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 20 C -0.49 -26.98 9.05 23.47 0.21 -26.77 16 21 H 0.09 4.50 7.91 -2.91 -0.02 4.48 16 22 C 0.03 1.59 5.14 85.25 0.44 2.02 16 23 N -0.83 -46.44 10.96 21.82 0.24 -46.20 16 24 Si 0.98 39.46 29.60 68.60 2.03 41.49 16 25 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 27 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 28 C -0.12 -7.06 8.24 23.02 0.19 -6.87 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.18 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.11 2.09 7.73 -2.39 -0.02 2.07 16 36 H 0.27 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.22 5.86 8.06 -2.91 -0.02 5.84 16 38 H 0.12 5.10 7.59 -2.91 -0.02 5.08 16 39 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 41 H 0.29 14.75 8.30 -92.71 -0.77 13.98 16 42 H 0.10 6.47 5.74 -2.91 -0.02 6.46 16 Total: -1.00 -80.68 369.77 6.16 -74.52 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 1.04 Total: 29.51 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 8.71 Total: -7.25 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -4.06 Total: -87.20 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -1.57 Total: -51.06 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -80.68 6.16 -74.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089409777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.430 kcal (2) G-P(sol) polarization free energy of solvation -80.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds