Wall clock time and date at job start Tue Mar 31 2020 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00382 * 2 1 4 4 C 1.52998 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47019 * 174.99877 * 4 3 2 6 6 C 1.52994 * 109.47357 * 54.99355 * 4 3 2 7 7 N 1.46501 * 109.47277 * 175.00194 * 6 4 3 8 8 C 1.34427 * 126.82051 * 125.00184 * 7 6 4 9 9 N 1.30836 * 108.07377 * 179.97438 * 8 7 6 10 10 C 1.33243 * 109.83072 * 0.02562 * 9 8 7 11 11 N 1.30712 * 108.94580 * 359.74973 * 10 9 8 12 12 O 1.45206 * 109.46511 * 294.99613 * 4 3 2 13 13 C 1.34704 * 117.00154 * 269.99710 * 12 4 3 14 14 O 1.21470 * 119.99681 * 0.02562 * 13 12 4 15 15 C 1.47762 * 120.00327 * 180.02562 * 13 12 4 16 16 C 1.39973 * 120.02681 * 359.72664 * 15 13 12 17 17 C 1.38325 * 120.34921 * 179.76533 * 16 15 13 18 18 C 1.37756 * 120.41799 * 0.51226 * 17 16 15 19 19 C 1.40754 * 120.04953 * 359.74507 * 18 17 16 20 20 C 1.41440 * 120.17287 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00129 * 334.91727 * 20 19 18 22 22 C 1.39944 * 120.00253 * 154.92554 * 20 19 18 23 23 N 1.30827 * 119.99594 * 342.58401 * 22 20 19 24 24 Si 1.86795 * 120.00275 * 162.58466 * 22 20 19 25 25 H 1.48503 * 109.47311 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46947 * 119.99621 * 24 22 20 27 27 H 1.48496 * 109.47137 * 240.00076 * 24 22 20 28 28 C 1.39054 * 120.03355 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47502 * 60.00206 * 1 2 3 31 31 H 1.08999 * 109.47007 * 300.00671 * 1 2 3 32 32 H 1.09003 * 109.46397 * 300.00042 * 3 2 1 33 33 H 1.09000 * 109.46863 * 59.99510 * 3 2 1 34 34 H 1.09006 * 109.47388 * 295.00392 * 6 4 3 35 35 H 1.09003 * 109.47494 * 55.00309 * 6 4 3 36 36 H 1.08000 * 125.96552 * 359.97438 * 8 7 6 37 37 H 1.07996 * 125.52559 * 179.97438 * 10 9 8 38 38 H 1.07995 * 119.82577 * 359.97438 * 16 15 13 39 39 H 1.07993 * 119.78774 * 180.25730 * 17 16 15 40 40 H 1.07996 * 119.97522 * 179.76374 * 18 17 16 41 41 H 0.96996 * 119.99985 * 180.02562 * 23 22 20 42 42 H 1.07995 * 120.20383 * 359.95144 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9784 2.1765 -0.0902 6 6 3.9781 0.3197 -1.1825 7 7 5.4413 0.3016 -1.2535 8 6 6.2341 -0.7839 -1.2631 9 7 7.4761 -0.3789 -1.3353 10 6 7.5159 0.9525 -1.3728 11 7 6.2940 1.4149 -1.3302 12 8 3.9727 0.5695 1.2399 13 6 4.2429 1.3947 2.2697 14 8 4.1164 2.5953 2.1352 15 6 4.6933 0.8395 3.5629 16 6 4.8338 -0.5442 3.7202 17 6 5.2596 -1.0708 4.9264 18 6 5.5401 -0.2410 5.9895 19 6 5.3996 1.1528 5.8520 20 6 5.6875 2.0073 6.9417 21 1 5.6184 1.6347 7.9531 22 6 6.0615 3.3357 6.7095 23 7 6.4748 3.7010 5.5232 24 14 5.9708 4.5871 8.0933 25 1 5.4748 3.9259 9.3270 26 1 7.3227 5.1492 8.3417 27 1 5.0423 5.6812 7.7111 28 6 4.9720 1.6908 4.6265 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 3.6083 -0.6968 -1.0474 35 1 3.5746 0.7332 -2.1067 36 1 5.9036 -1.8111 -1.2190 37 1 8.4121 1.5520 -1.4326 38 1 4.6118 -1.2040 2.8946 39 1 5.3688 -2.1396 5.0365 40 1 5.8684 -0.6600 6.9292 41 1 6.7345 4.6216 5.3623 42 1 4.8612 2.7588 4.5110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089409779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:59 Heat of formation + Delta-G solvation = -17.951789 kcal Electronic energy + Delta-G solvation = -28170.944949 eV Core-core repulsion = 24118.335724 eV Total energy + Delta-G solvation = -4052.609225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.96967 -40.07152 -38.20499 -37.32404 -36.03616 -34.31844 -33.75177 -31.22834 -31.08034 -30.13888 -29.52459 -27.25757 -25.89329 -25.42501 -23.83451 -22.29555 -21.93953 -21.09778 -20.83937 -19.82250 -18.03759 -17.58250 -16.94229 -16.43096 -16.08854 -15.94227 -15.69106 -15.38419 -15.01967 -14.77323 -14.62940 -14.50799 -14.09135 -13.62980 -13.44375 -13.17013 -12.91148 -12.65063 -12.52872 -12.38992 -12.05065 -11.77050 -11.71268 -11.23795 -11.15094 -11.08534 -10.79538 -10.54213 -10.49725 -10.25118 -9.94989 -9.93097 -9.75670 -9.71615 -9.67314 -9.46756 -9.27255 -7.77564 -7.57946 -6.84625 -4.46229 1.69500 1.93119 2.29237 2.74931 2.98389 3.05289 3.06874 3.09296 3.11394 3.47441 3.60238 3.88613 4.21753 4.38886 4.54205 4.64684 4.70632 4.94805 4.96585 5.00156 5.14303 5.18432 5.23958 5.39063 5.46855 5.51386 5.52637 5.78119 6.10081 6.27237 6.37020 6.49331 6.58084 6.80569 6.81352 6.90091 6.91506 6.94610 7.14415 7.27962 7.64985 7.72051 7.87944 8.07319 8.14317 8.41609 8.47879 8.74393 8.76470 10.10840 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003640 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.269896 B = 7691.115725 C = 8504.223525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.048 3.952 4 C 0.080 3.920 5 H 0.111 0.889 6 C 0.141 3.859 7 N -0.378 5.378 8 C 0.263 3.737 9 N -0.549 5.549 10 C 0.200 3.800 11 N -0.319 5.319 12 O -0.339 6.339 13 C 0.513 3.487 14 O -0.516 6.516 15 C -0.115 4.115 16 C -0.191 4.191 17 C -0.103 4.103 18 C -0.200 4.200 19 C 0.096 3.904 20 C -0.460 4.460 21 H 0.083 0.917 22 C 0.073 3.927 23 N -0.787 5.787 24 Si 0.910 3.090 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.271 1.271 28 C -0.088 4.088 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.218 0.782 37 H 0.215 0.785 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.284 0.716 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 -5.708 -13.281 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.030 4.030 4 C 0.023 3.977 5 H 0.129 0.871 6 C 0.019 3.981 7 N -0.168 5.168 8 C -0.034 4.034 9 N -0.276 5.276 10 C -0.103 4.103 11 N -0.147 5.147 12 O -0.256 6.256 13 C 0.361 3.639 14 O -0.406 6.406 15 C -0.116 4.116 16 C -0.211 4.211 17 C -0.122 4.122 18 C -0.220 4.220 19 C 0.093 3.907 20 C -0.489 4.489 21 H 0.101 0.899 22 C -0.146 4.146 23 N -0.411 5.411 24 Si 0.734 3.266 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.108 4.108 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.234 0.766 37 H 0.232 0.768 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.630 -4.749 -13.505 16.222 hybrid contribution -0.387 0.837 0.536 1.066 sum -8.017 -3.913 -12.970 15.741 Atomic orbital electron populations 1.22761 0.80801 1.02929 1.00056 1.87903 1.19875 1.26889 1.95450 1.22948 0.92138 0.85783 1.02088 1.22936 0.92621 0.99224 0.82936 0.87097 1.21872 0.74175 1.04234 0.97824 1.50448 1.07699 1.04675 1.54022 1.26032 0.86090 0.95235 0.96011 1.70535 1.19963 1.12081 1.24998 1.25962 0.95883 0.90308 0.98112 1.78028 1.01884 1.09006 1.25739 1.86726 1.78061 1.40538 1.20296 1.21945 0.72922 0.84661 0.84410 1.90756 1.50383 1.16356 1.83058 1.18810 1.08398 0.94592 0.89817 1.20541 1.09795 0.92935 0.97796 1.20509 1.00390 0.97704 0.93556 1.21195 1.08651 0.93959 0.98209 1.17538 0.89287 0.91468 0.92367 1.19603 1.40606 0.94460 0.94269 0.89882 1.25970 0.92336 0.99521 0.96753 1.69788 1.29054 1.19620 1.22666 0.86222 0.78800 0.80074 0.81467 1.18277 1.19844 1.19588 1.21644 0.97721 0.99723 0.91698 0.89384 0.94139 0.93853 0.91388 0.91526 0.86099 0.87671 0.76599 0.76842 0.88004 0.88500 0.88291 0.90456 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.46 9.89 -38.80 -0.38 -4.84 16 3 C 0.05 0.58 5.80 37.16 0.22 0.79 16 4 C 0.08 1.14 2.49 -26.74 -0.07 1.08 16 5 H 0.11 1.84 7.12 -51.93 -0.37 1.47 16 6 C 0.14 1.54 5.94 -4.04 -0.02 1.51 16 7 N -0.38 -5.10 3.64 -62.63 -0.23 -5.33 16 8 C 0.26 3.31 12.63 -90.65 -1.14 2.17 16 9 N -0.55 -8.17 11.19 -15.83 -0.18 -8.34 16 10 C 0.20 2.94 13.03 -91.81 -1.20 1.75 16 11 N -0.32 -5.06 12.54 29.29 0.37 -4.70 16 12 O -0.34 -6.29 9.04 -43.28 -0.39 -6.68 16 13 C 0.51 11.61 7.87 34.62 0.27 11.88 16 14 O -0.52 -12.59 15.59 -19.24 -0.30 -12.90 16 15 C -0.11 -2.81 5.87 -105.05 -0.62 -3.42 16 16 C -0.19 -4.27 9.62 -38.90 -0.37 -4.64 16 17 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 18 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 19 C 0.10 2.53 5.57 -106.87 -0.59 1.94 16 20 C -0.46 -12.03 9.05 -37.72 -0.34 -12.37 16 21 H 0.08 2.06 7.90 -52.48 -0.41 1.64 16 22 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 23 N -0.79 -20.86 10.97 55.55 0.61 -20.25 16 24 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 C -0.09 -2.37 8.23 -38.43 -0.32 -2.68 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.12 1.09 7.67 -51.93 -0.40 0.69 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.22 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.22 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.10 2.06 7.59 -52.49 -0.40 1.66 16 39 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 41 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 42 H 0.13 3.84 5.77 -52.49 -0.30 3.54 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -33.25 371.25 -9.13 -42.38 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.25 Total: 8.11 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -3.94 Total: -6.68 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.57 Total: -38.62 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.08 Total: -24.42 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.25 -9.13 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089409779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.428 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds