Wall clock time and date at job start Tue Mar 31 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46954 * 2 1 4 4 C 1.53000 * 109.47154 * 120.00197 * 2 1 3 5 5 C 1.52996 * 117.49786 * 8.74653 * 4 2 1 6 6 C 1.53004 * 117.49919 * 300.08690 * 4 2 1 7 7 N 1.46505 * 109.47277 * 240.00360 * 2 1 3 8 8 C 1.46498 * 119.99577 * 299.99632 * 7 2 1 9 9 C 1.50699 * 109.47417 * 269.99958 * 8 7 2 10 10 H 1.08001 * 120.00039 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99953 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00472 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99800 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47349 * 89.99748 * 13 11 9 15 15 H 1.48505 * 109.47147 * 210.00025 * 13 11 9 16 16 H 1.48504 * 109.46992 * 329.99616 * 13 11 9 17 17 C 1.34777 * 119.99949 * 120.00193 * 7 2 1 18 18 O 1.21276 * 119.99613 * 180.02562 * 17 7 2 19 19 C 1.50698 * 120.00044 * 359.97438 * 17 7 2 20 20 H 1.08999 * 109.20091 * 58.03726 * 19 17 7 21 21 C 1.54139 * 109.27997 * 298.55163 * 19 17 7 22 22 S 1.83297 * 101.08149 * 267.99145 * 21 19 17 23 23 C 1.77432 * 96.60894 * 335.15424 * 22 21 19 24 24 C 1.38821 * 130.57292 * 195.41059 * 23 22 21 25 25 C 1.38035 * 120.16276 * 179.69217 * 24 23 22 26 26 C 1.38316 * 119.28973 * 0.13342 * 25 24 23 27 27 C 1.37703 * 120.54378 * 359.62267 * 26 25 24 28 28 C 1.38893 * 108.28220 * 15.24347 * 23 22 21 29 29 H 1.08998 * 109.46747 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47168 * 299.99641 * 1 2 3 31 31 H 1.09003 * 109.47197 * 59.99889 * 1 2 3 32 32 H 1.08997 * 115.54937 * 154.42113 * 4 2 1 33 33 H 1.09003 * 117.50131 * 0.02562 * 5 4 2 34 34 H 1.09007 * 117.49666 * 145.02144 * 5 4 2 35 35 H 1.08993 * 117.50145 * 214.98059 * 6 4 2 36 36 H 1.08999 * 117.49556 * 0.02562 * 6 4 2 37 37 H 1.08996 * 109.47454 * 30.00376 * 8 7 2 38 38 H 1.09003 * 109.46507 * 150.00261 * 8 7 2 39 39 H 0.96994 * 120.00490 * 179.97438 * 12 11 9 40 40 H 1.08996 * 111.09748 * 150.03964 * 21 19 17 41 41 H 1.08994 * 111.09709 * 25.94989 * 21 19 17 42 42 H 1.08002 * 119.92300 * 359.67198 * 24 23 22 43 43 H 1.08002 * 120.35170 * 179.84934 * 25 24 23 44 44 H 1.08001 * 119.72931 * 179.87130 * 26 25 24 45 45 H 1.08008 * 119.47148 * 180.31214 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.0108 -1.4566 2.1100 6 6 1.6340 -0.1508 2.6096 7 7 2.0184 -0.6905 -1.1962 8 6 1.6645 -2.0931 -1.4280 9 6 2.7032 -2.9842 -0.7972 10 1 3.5428 -2.5493 -0.2753 11 6 2.5817 -4.3547 -0.8862 12 7 1.5591 -4.8844 -1.5212 13 14 3.8689 -5.4592 -0.1036 14 1 3.4752 -5.7641 1.2954 15 1 3.9718 -6.7236 -0.8756 16 1 5.1833 -4.7680 -0.1084 17 6 2.7933 -0.0355 -2.0833 18 8 3.1971 -0.6070 -3.0738 19 6 3.1569 1.4074 -1.8450 20 1 3.6705 1.4943 -0.8876 21 6 1.8714 2.2574 -1.8119 22 16 1.7390 2.7645 -3.5683 23 6 3.4640 2.6132 -3.9552 24 6 4.1935 3.0966 -5.0328 25 6 5.5496 2.8536 -5.1173 26 6 6.1696 2.1229 -4.1198 27 6 5.4469 1.6477 -3.0483 28 6 4.0739 1.8784 -2.9466 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 3.0330 -1.1628 1.1647 33 1 -0.0295 -1.4269 1.7861 34 1 1.3269 -2.3818 2.5921 35 1 2.3597 -0.2173 3.4201 36 1 1.0033 0.7381 2.6146 37 1 0.6905 -2.3002 -0.9847 38 1 1.6239 -2.2851 -2.5003 39 1 1.4738 -5.8485 -1.5841 40 1 1.9906 3.1237 -1.1613 41 1 1.0124 1.6580 -1.5106 42 1 3.6987 3.6638 -5.8073 43 1 6.1197 3.2262 -5.9556 44 1 7.2300 1.9269 -4.1798 45 1 5.9495 1.0834 -2.2767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095398536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:23 Heat of formation + Delta-G solvation = 15.177529 kcal Electronic energy + Delta-G solvation = -27004.062330 eV Core-core repulsion = 23499.182915 eV Total energy + Delta-G solvation = -3504.879416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64211 -39.97306 -38.78674 -36.05852 -35.76386 -34.50794 -31.82948 -31.26549 -30.58042 -29.12670 -26.21277 -25.80214 -24.61995 -23.80139 -23.05878 -22.49525 -21.07971 -19.66352 -18.72433 -18.57899 -18.25313 -17.35757 -16.71204 -16.67104 -16.50707 -15.99564 -15.72128 -15.64281 -15.19093 -15.06035 -14.47504 -14.40447 -14.00655 -13.90393 -13.84367 -13.58872 -13.33260 -13.24659 -13.01982 -12.83027 -12.61429 -12.58150 -12.45649 -12.37191 -12.17656 -12.03835 -11.93071 -11.49464 -11.23677 -11.12851 -10.73644 -10.68720 -10.59534 -10.58156 -9.78926 -9.44446 -8.43902 -8.18747 -6.28996 0.15477 0.34595 0.52306 1.17867 1.32598 1.35451 1.44390 1.72409 2.17205 2.39650 2.72273 3.07771 3.12823 3.26874 3.38808 3.64452 3.82808 3.89010 4.00585 4.13510 4.13950 4.23126 4.28073 4.30786 4.38924 4.44368 4.45977 4.55252 4.61628 4.76724 4.84505 4.94556 4.99306 5.00728 5.08704 5.18620 5.25695 5.26955 5.35501 5.39133 5.41189 5.51358 5.51537 5.61552 5.87307 5.94321 6.12122 6.72255 6.79676 7.30559 7.46102 8.89037 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.004613 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.382947 B = 6068.702448 C = 7259.821751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.157 3.843 3 H 0.118 0.882 4 C -0.167 4.167 5 C -0.185 4.185 6 C -0.145 4.145 7 N -0.589 5.589 8 C 0.271 3.729 9 C -0.514 4.514 10 H 0.051 0.949 11 C 0.009 3.991 12 N -0.930 5.930 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.509 3.491 18 O -0.581 6.581 19 C -0.071 4.071 20 H 0.139 0.861 21 C -0.076 4.076 22 S -0.175 6.175 23 C -0.087 4.087 24 C -0.104 4.104 25 C -0.097 4.097 26 C -0.123 4.123 27 C -0.097 4.097 28 C -0.099 4.099 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.028 0.972 38 H -0.013 1.013 39 H 0.263 0.737 40 H 0.152 0.848 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.166 0.834 44 H 0.153 0.847 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 20.091 4.455 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 H 0.136 0.864 4 C -0.187 4.187 5 C -0.222 4.222 6 C -0.183 4.183 7 N -0.319 5.319 8 C 0.150 3.850 9 C -0.553 4.553 10 H 0.070 0.930 11 C -0.189 4.189 12 N -0.571 5.571 13 Si 0.780 3.220 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.296 3.704 18 O -0.460 6.460 19 C -0.093 4.093 20 H 0.157 0.843 21 C -0.224 4.224 22 S 0.067 5.933 23 C -0.200 4.200 24 C -0.127 4.127 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.117 4.117 28 C -0.104 4.104 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.072 0.928 40 H 0.170 0.830 41 H 0.146 0.854 42 H 0.160 0.840 43 H 0.183 0.817 44 H 0.171 0.829 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.650 19.952 3.270 20.285 hybrid contribution 1.556 -2.117 0.653 2.708 sum 3.206 17.834 3.924 18.540 Atomic orbital electron populations 1.22333 0.94037 1.02541 1.03394 1.21042 0.94992 0.96092 0.82477 0.86419 1.22460 0.99670 1.04771 0.91755 1.22984 0.98881 0.96169 1.04168 1.23110 1.03061 0.97113 0.94974 1.48223 1.49038 1.12707 1.21956 1.18600 0.95342 0.76719 0.94306 1.21554 1.08650 0.91321 1.33786 0.93032 1.25702 0.97614 0.99520 0.96070 1.70043 1.31330 1.11942 1.43768 0.85609 0.79408 0.78148 0.78835 1.19064 1.21090 1.19952 1.20711 0.78459 0.88475 0.82751 1.90664 1.54594 1.70140 1.30635 1.20776 0.95884 0.91566 1.01077 0.84312 1.24809 0.99049 1.03661 0.94832 1.85976 1.06517 1.86111 1.14710 1.22212 0.95668 1.02822 0.99274 1.20738 0.94555 1.00799 0.96605 1.21493 0.93532 0.97359 0.99233 1.21308 1.01420 0.98054 0.93527 1.21042 0.92282 0.98730 0.99671 1.20374 0.95035 0.98918 0.96095 0.93345 0.87840 0.92101 0.90211 0.88084 0.91115 0.88192 0.85998 0.95457 0.99515 0.92774 0.83007 0.85427 0.84001 0.81678 0.82946 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 7.42 71.98 0.53 -3.70 16 2 C 0.16 4.57 2.01 44.99 0.09 4.66 16 3 H 0.12 2.56 4.54 -2.39 -0.01 2.55 16 4 C -0.17 -5.08 4.81 -10.79 -0.05 -5.14 16 5 C -0.19 -5.39 9.57 30.62 0.29 -5.10 16 6 C -0.15 -3.05 9.90 30.62 0.30 -2.75 16 7 N -0.59 -24.26 2.35 -802.14 -1.88 -26.14 16 8 C 0.27 14.44 4.77 85.63 0.41 14.85 16 9 C -0.51 -29.03 8.35 25.60 0.21 -28.82 16 10 H 0.05 2.90 6.74 -2.91 -0.02 2.88 16 11 C 0.01 0.53 5.46 84.65 0.46 0.99 16 12 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 13 Si 0.95 45.37 29.54 68.60 2.03 47.39 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 17 C 0.51 21.39 6.95 87.66 0.61 22.00 16 18 O -0.58 -31.17 15.60 -3.02 -0.05 -31.22 16 19 C -0.07 -2.12 2.12 -11.85 -0.03 -2.14 16 20 H 0.14 3.36 7.68 -2.39 -0.02 3.34 16 21 C -0.08 -1.76 5.65 72.37 0.41 -1.36 16 22 S -0.17 -5.05 23.05 -56.49 -1.30 -6.35 16 23 C -0.09 -2.67 6.48 22.57 0.15 -2.52 16 24 C -0.10 -2.64 10.05 22.36 0.22 -2.41 16 25 C -0.10 -2.08 10.08 22.24 0.22 -1.86 16 26 C -0.12 -2.91 10.00 22.16 0.22 -2.69 16 27 C -0.10 -2.85 9.97 22.47 0.22 -2.63 16 28 C -0.10 -3.11 4.46 -19.33 -0.09 -3.20 16 29 H 0.05 1.54 5.49 -2.39 -0.01 1.52 16 30 H 0.10 1.82 7.07 -2.39 -0.02 1.80 16 31 H 0.06 1.49 6.82 -2.39 -0.02 1.47 16 32 H 0.08 2.98 6.85 -2.39 -0.02 2.96 16 33 H 0.10 2.83 5.85 -2.39 -0.01 2.81 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.12 1.80 7.60 -2.39 -0.02 1.78 16 37 H 0.03 1.49 6.43 -2.39 -0.02 1.47 16 38 H -0.01 -0.84 7.42 -2.39 -0.02 -0.86 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.13 2.95 4.33 -2.39 -0.01 2.94 16 42 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 45 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -78.25 364.99 4.29 -73.96 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.01 Total: 20.52 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 4.20 Total: -21.81 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -1.60 Total: -82.49 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.05 Total: -31.22 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -1.30 Total: -6.35 kcal Total: -78.25 4.29 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.139 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds