Wall clock time and date at job start Tue Mar 31 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52997 * 109.46979 * 119.99988 * 2 1 3 5 5 C 1.53005 * 117.50001 * 8.61635 * 4 2 1 6 6 C 1.53003 * 60.00126 * 252.51189 * 5 4 2 7 7 N 1.46502 * 109.47020 * 239.99681 * 2 1 3 8 8 C 1.46496 * 120.00058 * 299.99928 * 7 2 1 9 9 C 1.50706 * 109.47106 * 89.99968 * 8 7 2 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47216 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 119.99848 * 13 11 9 16 16 H 1.48501 * 109.47057 * 239.99829 * 13 11 9 17 17 C 1.34779 * 119.99726 * 120.00110 * 7 2 1 18 18 O 1.21283 * 119.99426 * 179.97438 * 17 7 2 19 19 C 1.50698 * 119.99936 * 0.02562 * 17 7 2 20 20 H 1.08992 * 109.26099 * 300.69696 * 19 17 7 21 21 C 1.54134 * 109.27273 * 60.20839 * 19 17 7 22 22 S 1.83302 * 101.08996 * 92.13188 * 21 19 17 23 23 C 1.77426 * 96.59685 * 24.87937 * 22 21 19 24 24 C 1.38819 * 130.57368 * 164.55425 * 23 22 21 25 25 C 1.38029 * 120.16715 * 180.22016 * 24 23 22 26 26 C 1.38323 * 119.28907 * 0.02562 * 25 24 23 27 27 C 1.37700 * 120.54223 * 359.87451 * 26 25 24 28 28 C 1.38714 * 108.24550 * 344.55202 * 23 22 21 29 29 H 1.08996 * 109.47423 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47377 * 300.00643 * 1 2 3 31 31 H 1.09003 * 109.47098 * 60.00042 * 1 2 3 32 32 H 1.08995 * 115.55218 * 154.33300 * 4 2 1 33 33 H 1.08999 * 117.49425 * 0.02562 * 5 4 2 34 34 H 1.08998 * 117.49428 * 145.02291 * 5 4 2 35 35 H 1.09002 * 117.49916 * 252.50719 * 6 5 4 36 36 H 1.09004 * 117.49638 * 107.49079 * 6 5 4 37 37 H 1.09001 * 109.47001 * 330.00259 * 8 7 2 38 38 H 1.09000 * 109.47574 * 210.00475 * 8 7 2 39 39 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 40 40 H 1.08994 * 111.09707 * 210.08928 * 21 19 17 41 41 H 1.08998 * 111.09505 * 334.13663 * 21 19 17 42 42 H 1.08002 * 119.91765 * 0.19798 * 24 23 22 43 43 H 1.07993 * 120.35654 * 180.02562 * 25 24 23 44 44 H 1.07995 * 119.72893 * 179.89126 * 26 25 24 45 45 H 1.07995 * 119.47506 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.0103 -1.4540 2.1118 6 6 1.6357 -0.1494 2.6096 7 7 2.0183 -0.6907 -1.1962 8 6 1.6644 -2.0932 -1.4279 9 6 0.3829 -2.1641 -2.2178 10 1 -0.1176 -1.2552 -2.5175 11 6 -0.1506 -3.3891 -2.5578 12 7 0.4586 -4.4959 -2.1923 13 14 -1.7387 -3.4768 -3.5375 14 1 -2.2215 -2.1016 -3.8218 15 1 -1.4925 -4.1899 -4.8166 16 1 -2.7649 -4.2087 -2.7523 17 6 2.7932 -0.0357 -2.0833 18 8 3.1978 -0.6077 -3.0733 19 6 3.1577 1.4069 -1.8446 20 1 2.2469 2.0024 -1.7825 21 6 3.9328 1.5228 -0.5173 22 16 5.6625 1.3705 -1.1047 23 6 5.3670 1.9407 -2.7587 24 6 6.2527 2.3719 -3.7368 25 6 5.7812 2.7792 -4.9685 26 6 4.4204 2.7528 -5.2147 27 6 3.5420 2.3232 -4.2451 28 6 4.0003 1.9041 -2.9931 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.0323 -1.1640 1.1643 33 1 -0.0303 -1.4225 1.7889 34 1 1.3252 -2.3793 2.5942 35 1 2.3619 -0.2164 3.4197 36 1 1.0064 0.7406 2.6146 37 1 1.5294 -2.5968 -0.4707 38 1 2.4628 -2.5820 -1.9862 39 1 0.0834 -5.3577 -2.4318 40 1 3.7621 2.4909 -0.0466 41 1 3.6747 0.7088 0.1601 42 1 7.3132 2.3891 -3.5335 43 1 6.4675 3.1148 -5.7319 44 1 4.0436 3.0716 -6.1753 45 1 2.4830 2.3094 -4.4560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095398538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:31 Heat of formation + Delta-G solvation = 31.421874 kcal Electronic energy + Delta-G solvation = -26973.598932 eV Core-core repulsion = 23469.423924 eV Total energy + Delta-G solvation = -3504.175008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.26507 -38.84422 -37.50630 -34.50590 -34.44952 -32.51884 -30.79472 -29.67463 -29.51774 -27.28770 -25.26185 -23.99788 -23.08423 -22.70413 -22.09502 -21.21127 -19.88369 -18.28865 -17.54004 -16.82374 -16.57581 -15.95791 -15.50381 -15.39823 -15.06218 -14.67783 -14.44457 -14.34567 -13.81784 -13.48727 -13.36702 -12.97447 -12.82475 -12.57615 -12.41541 -12.18356 -12.05166 -11.72831 -11.54495 -11.43127 -11.23244 -11.12166 -10.99587 -10.89330 -10.66498 -10.57363 -10.25862 -10.14109 -10.05323 -9.73940 -9.61157 -9.47864 -9.05383 -8.66985 -8.42569 -7.70408 -7.32847 -6.03802 -4.07033 1.22284 1.39664 1.60211 2.27028 3.25912 3.27974 3.36558 3.39025 3.56869 3.83163 4.09607 4.40706 4.44268 4.58557 4.78821 4.89880 4.97033 5.03948 5.07285 5.18084 5.26861 5.31332 5.34242 5.38838 5.45111 5.51635 5.56569 5.60603 5.73837 5.80748 5.83686 5.99332 6.11515 6.13902 6.29509 6.30569 6.39336 6.40199 6.45619 6.53632 6.87972 6.92533 7.10776 7.46325 7.53659 7.92706 8.24725 8.37210 8.89134 9.04560 9.56857 11.04402 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.004866 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.671813 B = 5752.969245 C = 7461.413842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.161 3.839 3 H 0.081 0.919 4 C -0.164 4.164 5 C -0.169 4.169 6 C -0.182 4.182 7 N -0.587 5.587 8 C 0.249 3.751 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.516 3.484 18 O -0.519 6.519 19 C -0.082 4.082 20 H 0.113 0.887 21 C -0.086 4.086 22 S -0.145 6.145 23 C -0.069 4.069 24 C -0.093 4.093 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.076 4.076 28 C -0.071 4.071 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 15.939 5.336 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.099 0.901 4 C -0.183 4.183 5 C -0.205 4.205 6 C -0.219 4.219 7 N -0.319 5.319 8 C 0.130 3.870 9 C -0.557 4.557 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.301 3.699 18 O -0.394 6.394 19 C -0.105 4.105 20 H 0.131 0.869 21 C -0.234 4.234 22 S 0.097 5.903 23 C -0.181 4.181 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.142 4.142 27 C -0.096 4.096 28 C -0.077 4.077 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.003 14.961 5.529 17.420 hybrid contribution -2.058 0.114 -1.215 2.393 sum 4.945 15.075 4.314 16.441 Atomic orbital electron populations 1.22273 0.94498 1.04612 1.00475 1.20674 0.95063 0.94787 0.83904 0.90095 1.22668 1.00219 1.04373 0.91004 1.23087 0.99462 0.95242 1.02747 1.22967 1.04042 0.98155 0.96744 1.48253 1.48415 1.14823 1.20393 1.19254 0.96231 0.74267 0.97215 1.21441 1.07442 0.92320 1.34487 0.92437 1.24906 0.97547 0.95605 0.95997 1.69946 1.39358 0.97476 1.46475 0.86529 0.83345 0.78019 0.80043 1.19886 1.20977 1.21043 1.19755 0.79582 0.86621 0.83953 1.90709 1.53334 1.67792 1.27601 1.20831 1.00010 0.97919 0.91724 0.86925 1.24667 0.92621 1.07466 0.98650 1.85979 1.14275 1.83035 1.07049 1.21923 0.95649 1.02795 0.97740 1.20331 0.98658 1.00108 0.92531 1.21034 0.95619 0.99693 0.96074 1.20911 0.93370 1.00906 0.98973 1.20827 1.00168 0.97068 0.91507 1.20208 0.92347 0.99682 0.95460 0.89368 0.93045 0.92582 0.87762 0.87637 0.89146 0.89168 0.88914 0.94375 0.94192 0.92870 0.87566 0.85286 0.85749 0.85338 0.85680 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 7.07 37.16 0.26 -2.22 16 2 C 0.16 2.46 2.01 -67.93 -0.14 2.33 16 3 H 0.08 1.03 4.50 -51.93 -0.23 0.79 16 4 C -0.16 -2.31 3.93 -90.61 -0.36 -2.67 16 5 C -0.17 -2.30 9.49 -26.73 -0.25 -2.55 16 6 C -0.18 -2.00 9.90 -26.73 -0.26 -2.27 16 7 N -0.59 -11.84 2.35 -167.47 -0.39 -12.23 16 8 C 0.25 6.27 4.60 -5.19 -0.02 6.25 16 9 C -0.52 -14.04 7.83 -34.44 -0.27 -14.31 16 10 H 0.06 1.56 7.63 -52.49 -0.40 1.16 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 13 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 C 0.52 10.63 6.97 -10.99 -0.08 10.55 16 18 O -0.52 -13.23 15.60 5.55 0.09 -13.15 16 19 C -0.08 -1.28 2.13 -92.25 -0.20 -1.48 16 20 H 0.11 1.49 7.75 -51.93 -0.40 1.09 16 21 C -0.09 -1.12 5.62 37.75 0.21 -0.91 16 22 S -0.15 -2.17 23.06 -107.50 -2.48 -4.65 16 23 C -0.07 -1.07 6.48 -39.19 -0.25 -1.33 16 24 C -0.09 -1.25 10.05 -39.44 -0.40 -1.65 16 25 C -0.10 -1.25 10.08 -39.63 -0.40 -1.65 16 26 C -0.12 -1.54 10.00 -39.75 -0.40 -1.94 16 27 C -0.08 -1.13 9.98 -39.21 -0.39 -1.52 16 28 C -0.07 -1.15 4.45 -103.79 -0.46 -1.61 16 29 H 0.09 1.63 5.76 -51.93 -0.30 1.33 16 30 H 0.05 0.63 7.07 -51.93 -0.37 0.26 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.59 7.96 -51.93 -0.41 1.17 16 33 H 0.11 1.50 5.85 -51.93 -0.30 1.19 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.90 7.61 -51.93 -0.40 0.51 16 37 H 0.04 0.97 7.21 -51.93 -0.37 0.60 16 38 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.13 1.70 4.76 -51.93 -0.25 1.45 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -32.85 367.81 -11.37 -44.21 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.34 Total: 4.51 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.50 Total: -15.36 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.34 Total: -37.63 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.48 Total: -4.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.85 -11.37 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.635 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds