Wall clock time and date at job start Tue Mar 31 2020 04:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47310 * 2 1 4 4 C 1.52995 * 109.47384 * 239.99684 * 2 1 3 5 5 C 1.52998 * 117.50320 * 132.13009 * 4 2 1 6 6 C 1.53004 * 117.49805 * 63.47018 * 4 2 1 7 7 N 1.46504 * 109.47049 * 119.99289 * 2 1 3 8 8 C 1.46491 * 120.00320 * 243.41513 * 7 2 1 9 9 C 1.50702 * 109.47494 * 264.37607 * 8 7 2 10 10 H 1.08002 * 119.99729 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00146 * 180.02562 * 9 8 7 12 12 N 1.31507 * 119.99959 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99930 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47283 * 59.99866 * 13 11 9 15 15 H 1.48499 * 109.47061 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46746 * 299.99800 * 13 11 9 17 17 C 1.34782 * 119.99443 * 63.69636 * 7 2 1 18 18 O 1.21275 * 120.00107 * 355.98230 * 17 7 2 19 19 C 1.50697 * 119.99600 * 175.98813 * 17 7 2 20 20 H 1.09004 * 109.26347 * 310.08515 * 19 17 7 21 21 C 1.54131 * 109.27543 * 69.59756 * 19 17 7 22 22 S 1.83304 * 101.08748 * 92.12623 * 21 19 17 23 23 C 1.77436 * 96.59485 * 24.88658 * 22 21 19 24 24 C 1.38824 * 130.57113 * 164.58726 * 23 22 21 25 25 C 1.37554 * 120.28219 * 180.20094 * 24 23 22 26 26 C 1.38326 * 119.24520 * 0.02562 * 25 24 23 27 27 C 1.37701 * 120.54034 * 359.86626 * 26 25 24 28 28 C 1.38702 * 108.24126 * 344.54979 * 23 22 21 29 29 H 1.08995 * 109.47223 * 302.67077 * 1 2 3 30 30 H 1.09005 * 109.46925 * 62.66913 * 1 2 3 31 31 H 1.09000 * 109.47035 * 182.67117 * 1 2 3 32 32 H 1.09004 * 115.55365 * 277.80210 * 4 2 1 33 33 H 1.09003 * 117.49450 * 0.02562 * 5 4 2 34 34 H 1.08998 * 117.50135 * 145.01716 * 5 4 2 35 35 H 1.08998 * 117.49641 * 214.98206 * 6 4 2 36 36 H 1.08994 * 117.49993 * 0.02562 * 6 4 2 37 37 H 1.09004 * 109.47406 * 24.37930 * 8 7 2 38 38 H 1.09004 * 109.47312 * 144.37334 * 8 7 2 39 39 H 0.96998 * 120.00288 * 179.97438 * 12 11 9 40 40 H 1.08996 * 111.10142 * 210.08055 * 21 19 17 41 41 H 1.09001 * 111.09795 * 334.13550 * 21 19 17 42 42 H 1.07998 * 119.92029 * 0.18044 * 24 23 22 43 43 H 1.07996 * 120.40325 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.73068 * 179.88960 * 26 25 24 45 45 H 1.08002 * 119.47002 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.1338 -0.0310 -2.0664 6 6 1.7040 -0.1038 -2.6081 7 7 2.0183 -0.6905 1.1963 8 6 2.7977 0.0414 2.1977 9 6 4.2680 -0.1608 1.9361 10 1 4.5897 -0.7737 1.1070 11 6 5.2025 0.4357 2.7558 12 7 4.8109 1.1815 3.7656 13 14 7.0250 0.1855 2.4311 14 1 7.3606 0.6923 1.0762 15 1 7.8151 0.9264 3.4470 16 1 7.3481 -1.2617 2.5123 17 6 1.7552 -2.0006 1.3727 18 8 1.0534 -2.5904 0.5788 19 6 2.3331 -2.7323 2.5566 20 1 3.4033 -2.5340 2.6145 21 6 1.6525 -2.2318 3.8458 22 16 0.2751 -3.4306 4.0055 23 6 1.0407 -4.7439 3.0904 24 6 0.7240 -6.0932 3.0111 25 6 1.4751 -6.9370 2.2263 26 6 2.5482 -6.4256 1.5190 27 6 2.8623 -5.0871 1.5949 28 6 2.1100 -4.2143 2.3832 29 1 -0.3633 0.5547 0.8650 30 1 -0.3633 0.4719 -0.9130 31 1 -0.3633 -1.0265 0.0479 32 1 2.0709 -1.8090 -1.1844 33 1 3.4904 0.9368 -1.7139 34 1 3.8841 -0.6645 -2.5395 35 1 1.5142 -0.7853 -3.4374 36 1 1.1200 0.8164 -2.6122 37 1 2.5607 1.1037 2.1373 38 1 2.5512 -0.3298 3.1925 39 1 5.4683 1.6009 4.3425 40 1 2.3296 -2.2965 4.6975 41 1 1.2770 -1.2160 3.7223 42 1 -0.1153 -6.4831 3.5677 43 1 1.2307 -7.9871 2.1635 44 1 3.1444 -7.0814 0.9018 45 1 3.7042 -4.7063 1.0357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095398539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:34 Heat of formation + Delta-G solvation = 22.825245 kcal Electronic energy + Delta-G solvation = -27157.042797 eV Core-core repulsion = 23652.495011 eV Total energy + Delta-G solvation = -3504.547786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14131 -38.75679 -36.95924 -34.90062 -34.09223 -32.68279 -30.68393 -30.41943 -29.00482 -27.04002 -24.87902 -23.80082 -22.94982 -22.61030 -21.90330 -21.37027 -20.15936 -18.31396 -17.44609 -16.80587 -16.11336 -15.99181 -15.28891 -15.20034 -14.84237 -14.52026 -14.38656 -14.19476 -13.98843 -13.25010 -13.19167 -12.80357 -12.69130 -12.60185 -12.25035 -12.14444 -12.04859 -11.86779 -11.73027 -11.37190 -11.29505 -11.17076 -10.99309 -10.88657 -10.75789 -10.46404 -10.26667 -9.97511 -9.90823 -9.80776 -9.51795 -9.43681 -8.96578 -8.64297 -8.54049 -7.75804 -7.14673 -6.26735 -4.34197 1.37078 1.52630 1.84872 2.49608 3.17936 3.23827 3.24277 3.31336 3.65490 3.95975 4.23763 4.31765 4.66950 4.89923 4.95593 5.05897 5.08066 5.17291 5.24308 5.32147 5.42455 5.48748 5.63720 5.64929 5.75787 5.81109 5.82123 5.92301 5.92968 5.99728 6.09638 6.10271 6.18485 6.22878 6.41297 6.44805 6.45724 6.53870 6.61964 6.65913 6.72022 6.80459 7.04576 7.06632 7.51647 7.68760 7.96525 8.25840 8.71747 8.96049 9.34022 10.79490 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.009221 B = 0.005522 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.775098 B = 5069.810075 C = 6216.055206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.176 4.176 6 C -0.181 4.181 7 N -0.588 5.588 8 C 0.228 3.772 9 C -0.538 4.538 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.533 3.467 18 O -0.548 6.548 19 C -0.079 4.079 20 H 0.135 0.865 21 C -0.064 4.064 22 S -0.164 6.164 23 C -0.065 4.065 24 C -0.094 4.094 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.081 4.081 28 C -0.066 4.066 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.267 0.733 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 -7.807 -3.258 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 H 0.102 0.898 4 C -0.167 4.167 5 C -0.213 4.213 6 C -0.219 4.219 7 N -0.319 5.319 8 C 0.108 3.892 9 C -0.576 4.576 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.527 5.527 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.320 3.680 18 O -0.428 6.428 19 C -0.101 4.101 20 H 0.153 0.847 21 C -0.211 4.211 22 S 0.078 5.922 23 C -0.177 4.177 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.144 4.144 27 C -0.101 4.101 28 C -0.071 4.071 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.697 -7.720 -2.837 10.606 hybrid contribution 2.482 -0.014 -0.727 2.587 sum -4.214 -7.734 -3.564 9.501 Atomic orbital electron populations 1.22159 0.95565 1.03654 1.00808 1.20400 0.93223 0.95142 0.83155 0.89836 1.22617 1.02345 1.00564 0.91150 1.22960 0.91485 1.02654 1.04206 1.22867 0.99105 1.02662 0.97254 1.48210 1.52731 1.08775 1.22141 1.19693 0.90338 0.92541 0.86665 1.21439 0.90573 1.31732 1.13898 0.91988 1.24918 0.99169 0.94678 0.94803 1.69892 1.34708 1.31579 1.16516 0.86629 0.84642 0.78520 0.78186 1.20083 1.21123 1.20060 1.19765 0.80284 0.82050 0.85891 1.90586 1.38537 1.67451 1.46195 1.20740 1.05192 0.90269 0.93912 0.84708 1.24484 0.96594 1.00583 0.99488 1.85865 1.27313 1.10677 1.68299 1.21940 0.98075 0.96479 1.01227 1.20192 1.00526 0.90506 1.00539 1.20877 0.95632 0.99255 0.97012 1.20872 0.98167 0.94996 1.00405 1.20802 0.99082 0.92860 0.97347 1.20342 0.95915 0.93370 0.97503 0.93099 0.92552 0.90528 0.86822 0.88690 0.89544 0.89443 0.89207 0.94451 0.93860 0.92372 0.87274 0.85653 0.85993 0.85576 0.85948 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.11 37.16 0.34 -2.35 16 2 C 0.18 3.31 2.86 -67.93 -0.19 3.12 16 3 H 0.08 1.50 7.53 -51.93 -0.39 1.11 16 4 C -0.15 -2.55 4.83 -90.62 -0.44 -2.99 16 5 C -0.18 -2.76 10.18 -26.69 -0.27 -3.04 16 6 C -0.18 -2.57 9.75 -26.69 -0.26 -2.83 16 7 N -0.59 -11.62 2.42 -167.48 -0.40 -12.03 16 8 C 0.23 4.98 4.69 -5.20 -0.02 4.96 16 9 C -0.54 -12.95 8.29 -34.44 -0.29 -13.23 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 13 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 C 0.53 10.60 6.08 -10.98 -0.07 10.53 16 18 O -0.55 -11.74 12.48 5.56 0.07 -11.67 16 19 C -0.08 -1.46 2.20 -92.25 -0.20 -1.67 16 20 H 0.14 2.65 6.94 -51.93 -0.36 2.29 16 21 C -0.06 -1.09 5.85 37.75 0.22 -0.87 16 22 S -0.16 -2.75 23.06 -107.50 -2.48 -5.23 16 23 C -0.06 -1.10 6.48 -39.19 -0.25 -1.35 16 24 C -0.09 -1.36 10.03 -39.61 -0.40 -1.75 16 25 C -0.11 -1.37 10.07 -39.80 -0.40 -1.77 16 26 C -0.12 -1.67 10.00 -39.75 -0.40 -2.07 16 27 C -0.08 -1.30 9.97 -39.27 -0.39 -1.69 16 28 C -0.07 -1.16 4.48 -103.85 -0.46 -1.62 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.80 7.44 -51.93 -0.39 0.41 16 31 H 0.08 1.41 6.24 -51.93 -0.32 1.09 16 32 H 0.11 2.23 6.31 -51.93 -0.33 1.90 16 33 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.16 7.82 -51.93 -0.41 0.76 16 37 H 0.04 0.87 7.83 -51.93 -0.41 0.47 16 38 H 0.04 0.95 4.49 -51.93 -0.23 0.72 16 39 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.13 2.20 5.99 -51.93 -0.31 1.89 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -27.06 371.99 -11.57 -38.63 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.49 Total: 9.42 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -3.59 Total: -17.03 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.33 Total: -34.39 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.48 Total: -5.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.06 -11.57 -38.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.458 kcal (2) G-P(sol) polarization free energy of solvation -27.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds