Wall clock time and date at job start Tue Mar 31 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47310 * 2 1 4 4 C 1.52995 * 109.47384 * 239.99684 * 2 1 3 5 5 C 1.52998 * 117.50320 * 132.13009 * 4 2 1 6 6 C 1.53004 * 117.49805 * 63.47018 * 4 2 1 7 7 N 1.46504 * 109.47049 * 119.99289 * 2 1 3 8 8 C 1.46491 * 120.00320 * 243.41513 * 7 2 1 9 9 C 1.50702 * 109.47494 * 264.37607 * 8 7 2 10 10 H 1.08002 * 119.99729 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00146 * 180.02562 * 9 8 7 12 12 N 1.31507 * 119.99959 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99930 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47283 * 59.99866 * 13 11 9 15 15 H 1.48499 * 109.47061 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46746 * 299.99800 * 13 11 9 17 17 C 1.34782 * 119.99443 * 63.69636 * 7 2 1 18 18 O 1.21275 * 120.00107 * 355.98230 * 17 7 2 19 19 C 1.50697 * 119.99600 * 175.98813 * 17 7 2 20 20 H 1.09004 * 109.26347 * 310.08515 * 19 17 7 21 21 C 1.54131 * 109.27543 * 69.59756 * 19 17 7 22 22 S 1.83304 * 101.08748 * 92.12623 * 21 19 17 23 23 C 1.77436 * 96.59485 * 24.88658 * 22 21 19 24 24 C 1.38824 * 130.57113 * 164.58726 * 23 22 21 25 25 C 1.37554 * 120.28219 * 180.20094 * 24 23 22 26 26 C 1.38326 * 119.24520 * 0.02562 * 25 24 23 27 27 C 1.37701 * 120.54034 * 359.86626 * 26 25 24 28 28 C 1.38702 * 108.24126 * 344.54979 * 23 22 21 29 29 H 1.08995 * 109.47223 * 302.67077 * 1 2 3 30 30 H 1.09005 * 109.46925 * 62.66913 * 1 2 3 31 31 H 1.09000 * 109.47035 * 182.67117 * 1 2 3 32 32 H 1.09004 * 115.55365 * 277.80210 * 4 2 1 33 33 H 1.09003 * 117.49450 * 0.02562 * 5 4 2 34 34 H 1.08998 * 117.50135 * 145.01716 * 5 4 2 35 35 H 1.08998 * 117.49641 * 214.98206 * 6 4 2 36 36 H 1.08994 * 117.49993 * 0.02562 * 6 4 2 37 37 H 1.09004 * 109.47406 * 24.37930 * 8 7 2 38 38 H 1.09004 * 109.47312 * 144.37334 * 8 7 2 39 39 H 0.96998 * 120.00288 * 179.97438 * 12 11 9 40 40 H 1.08996 * 111.10142 * 210.08055 * 21 19 17 41 41 H 1.09001 * 111.09795 * 334.13550 * 21 19 17 42 42 H 1.07998 * 119.92029 * 0.18044 * 24 23 22 43 43 H 1.07996 * 120.40325 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.73068 * 179.88960 * 26 25 24 45 45 H 1.08002 * 119.47002 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.1338 -0.0310 -2.0664 6 6 1.7040 -0.1038 -2.6081 7 7 2.0183 -0.6905 1.1963 8 6 2.7977 0.0414 2.1977 9 6 4.2680 -0.1608 1.9361 10 1 4.5897 -0.7737 1.1070 11 6 5.2025 0.4357 2.7558 12 7 4.8109 1.1815 3.7656 13 14 7.0250 0.1855 2.4311 14 1 7.3606 0.6923 1.0762 15 1 7.8151 0.9264 3.4470 16 1 7.3481 -1.2617 2.5123 17 6 1.7552 -2.0006 1.3727 18 8 1.0534 -2.5904 0.5788 19 6 2.3331 -2.7323 2.5566 20 1 3.4033 -2.5340 2.6145 21 6 1.6525 -2.2318 3.8458 22 16 0.2751 -3.4306 4.0055 23 6 1.0407 -4.7439 3.0904 24 6 0.7240 -6.0932 3.0111 25 6 1.4751 -6.9370 2.2263 26 6 2.5482 -6.4256 1.5190 27 6 2.8623 -5.0871 1.5949 28 6 2.1100 -4.2143 2.3832 29 1 -0.3633 0.5547 0.8650 30 1 -0.3633 0.4719 -0.9130 31 1 -0.3633 -1.0265 0.0479 32 1 2.0709 -1.8090 -1.1844 33 1 3.4904 0.9368 -1.7139 34 1 3.8841 -0.6645 -2.5395 35 1 1.5142 -0.7853 -3.4374 36 1 1.1200 0.8164 -2.6122 37 1 2.5607 1.1037 2.1373 38 1 2.5512 -0.3298 3.1925 39 1 5.4683 1.6009 4.3425 40 1 2.3296 -2.2965 4.6975 41 1 1.2770 -1.2160 3.7223 42 1 -0.1153 -6.4831 3.5677 43 1 1.2307 -7.9871 2.1635 44 1 3.1444 -7.0814 0.9018 45 1 3.7042 -4.7063 1.0357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095398539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:33 Heat of formation + Delta-G solvation = 12.390711 kcal Electronic energy + Delta-G solvation = -27157.495272 eV Core-core repulsion = 23652.495011 eV Total energy + Delta-G solvation = -3505.000261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.61018 -40.00707 -38.30044 -36.56332 -35.41873 -34.52214 -31.89819 -31.76710 -30.30976 -28.83470 -26.31824 -25.26573 -24.57617 -23.77785 -23.13088 -22.69127 -21.52772 -19.78605 -18.75319 -18.62170 -17.63863 -17.51469 -16.62318 -16.44049 -16.30822 -16.12913 -15.74341 -15.51567 -15.33682 -14.66359 -14.46891 -14.38035 -14.11195 -13.88935 -13.81225 -13.54705 -13.43866 -13.30216 -13.18734 -13.05699 -12.72366 -12.60635 -12.43241 -12.32389 -12.12197 -11.99047 -11.85494 -11.66358 -11.26811 -11.22720 -10.84818 -10.67473 -10.59709 -10.41749 -9.77464 -9.40819 -8.44091 -8.19283 -6.32078 0.18650 0.36612 0.55153 1.17205 1.40728 1.42945 1.48912 1.73050 2.20449 2.41297 2.74808 3.01093 3.10842 3.34619 3.50000 3.61419 3.85910 3.92661 4.03774 4.15695 4.17021 4.22001 4.31983 4.38847 4.45982 4.48591 4.55782 4.58540 4.60986 4.74171 4.79138 4.81807 4.96604 4.98192 5.00520 5.06650 5.21284 5.26452 5.30084 5.30750 5.36125 5.41659 5.52767 5.68949 5.94030 5.96934 6.07634 6.56764 6.83477 7.31998 7.43114 8.85514 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.009221 B = 0.005522 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.775098 B = 5069.810075 C = 6216.055206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.178 3.822 3 H 0.080 0.920 4 C -0.169 4.169 5 C -0.180 4.180 6 C -0.151 4.151 7 N -0.590 5.590 8 C 0.240 3.760 9 C -0.537 4.537 10 H 0.051 0.949 11 C 0.029 3.971 12 N -0.915 5.915 13 Si 0.945 3.055 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.533 3.467 18 O -0.563 6.563 19 C -0.075 4.075 20 H 0.115 0.885 21 C -0.062 4.062 22 S -0.166 6.166 23 C -0.086 4.086 24 C -0.099 4.099 25 C -0.095 4.095 26 C -0.118 4.118 27 C -0.102 4.102 28 C -0.093 4.093 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.021 0.979 38 H 0.043 0.957 39 H 0.267 0.733 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.169 0.831 44 H 0.155 0.845 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -9.486 -4.368 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.075 3.925 3 H 0.099 0.901 4 C -0.188 4.188 5 C -0.217 4.217 6 C -0.188 4.188 7 N -0.320 5.320 8 C 0.119 3.881 9 C -0.576 4.576 10 H 0.069 0.931 11 C -0.172 4.172 12 N -0.554 5.554 13 Si 0.771 3.229 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.197 1.197 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.097 4.097 20 H 0.133 0.867 21 C -0.210 4.210 22 S 0.076 5.924 23 C -0.198 4.198 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.138 4.138 27 C -0.122 4.122 28 C -0.099 4.099 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.187 0.813 44 H 0.173 0.827 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.929 -9.403 -3.964 12.334 hybrid contribution 2.529 0.419 -0.434 2.600 sum -4.400 -8.984 -4.398 10.928 Atomic orbital electron populations 1.22054 0.94258 1.02503 1.02211 1.20573 0.94256 0.94845 0.82854 0.90138 1.22434 1.04836 0.99090 0.92482 1.22988 0.92413 1.02191 1.04097 1.22976 0.97561 1.02974 0.95317 1.48199 1.52475 1.08907 1.22420 1.19401 0.89682 0.91667 0.87321 1.21548 0.91730 1.31048 1.13259 0.93074 1.25506 1.02419 0.94584 0.94700 1.69973 1.35689 1.32501 1.17283 0.85807 0.80762 0.78439 0.77922 1.19977 1.20871 1.19739 1.19980 0.79940 0.81901 0.86068 1.90560 1.39316 1.67670 1.46829 1.20660 1.03756 0.91476 0.93795 0.86717 1.24375 0.97013 1.00330 0.99241 1.85721 1.27131 1.10964 1.68608 1.22158 0.98303 0.97508 1.01840 1.20618 1.01289 0.89579 1.00745 1.21385 0.94153 1.00995 0.94953 1.21294 0.98387 0.94098 1.00028 1.21010 0.99290 0.94204 0.97669 1.20361 0.97406 0.92832 0.99299 0.93039 0.89904 0.92651 0.89444 0.89166 0.89114 0.87846 0.87380 0.96090 0.93941 0.92368 0.86623 0.86590 0.83836 0.81319 0.82699 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.11 71.98 0.66 -4.30 16 2 C 0.18 6.47 2.86 44.99 0.13 6.60 16 3 H 0.08 2.94 7.53 -2.39 -0.02 2.92 16 4 C -0.17 -5.84 4.83 -10.79 -0.05 -5.89 16 5 C -0.18 -5.53 10.18 30.62 0.31 -5.22 16 6 C -0.15 -3.99 9.75 30.62 0.30 -3.69 16 7 N -0.59 -24.18 2.42 -802.16 -1.94 -26.12 16 8 C 0.24 10.93 4.69 85.64 0.40 11.34 16 9 C -0.54 -26.58 8.29 25.60 0.21 -26.36 16 10 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 11 C 0.03 1.45 5.46 84.66 0.46 1.91 16 12 N -0.92 -48.34 13.29 21.45 0.28 -48.06 16 13 Si 0.94 40.63 29.54 68.60 2.03 42.65 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 C 0.53 22.01 6.08 87.66 0.53 22.54 16 18 O -0.56 -24.82 12.48 -3.01 -0.04 -24.86 16 19 C -0.07 -2.88 2.20 -11.85 -0.03 -2.91 16 20 H 0.12 4.79 6.94 -2.39 -0.02 4.77 16 21 C -0.06 -2.20 5.85 72.36 0.42 -1.78 16 22 S -0.17 -5.64 23.06 -56.49 -1.30 -6.94 16 23 C -0.09 -2.87 6.48 22.52 0.15 -2.72 16 24 C -0.10 -2.63 10.03 22.25 0.22 -2.41 16 25 C -0.10 -2.09 10.07 22.13 0.22 -1.87 16 26 C -0.12 -2.88 10.00 22.16 0.22 -2.65 16 27 C -0.10 -3.24 9.97 22.47 0.22 -3.01 16 28 C -0.09 -3.35 4.48 -19.37 -0.09 -3.44 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 2.21 7.44 -2.38 -0.02 2.19 16 31 H 0.05 2.05 6.24 -2.39 -0.01 2.03 16 32 H 0.09 3.51 6.31 -2.38 -0.02 3.50 16 33 H 0.09 2.85 8.07 -2.39 -0.02 2.83 16 34 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.11 2.48 7.82 -2.39 -0.02 2.46 16 37 H 0.02 1.02 7.83 -2.39 -0.02 1.00 16 38 H 0.04 1.96 4.49 -2.38 -0.01 1.94 16 39 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 40 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 41 H 0.12 4.29 5.99 -2.39 -0.01 4.28 16 42 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 45 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -59.14 371.99 4.32 -54.82 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.99 Total: 32.36 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.30 Total: -23.86 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.65 Total: -74.18 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.04 Total: -24.86 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.30 Total: -6.94 kcal Total: -59.14 4.32 -54.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.206 kcal (2) G-P(sol) polarization free energy of solvation -59.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds